Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:10:47 (23002): wrapper (7.7.26015): starting
16:10:47 (23002): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 16:10:47] Arguments: --nthreads 8
[2025-10-12 16:10:47] Threads: 8
[2025-10-12 16:10:47] Checking for CVMFS
[2025-10-12 16:10:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:10:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:10:47] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:10:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:10:47] 2.11.2.0 2876 206308 78776 151635 2 57 12303661 20275201 1 130560 3 73483383 99.977 10707066 9865 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 16:10:47] CVMFS is ok
[2025-10-12 16:10:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 16:10:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 16:10:47] Further information can be found at the LHC@home message board.
[2025-10-12 16:10:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:10:47] Checking for apptainer binary...
[2025-10-12 16:10:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 16:10:47] Running /usr/bin/apptainer --version
[2025-10-12 16:10:47] apptainer version 1.3.2-1.el7
[2025-10-12 16:10:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:10:49] c-204-5.aglt2.org
[2025-10-12 16:10:49] apptainer works
[2025-10-12 16:10:49] Set ATHENA_PROC_NUMBER=8
[2025-10-12 16:10:49] Set ATHENA_CORE_NUMBER=8
[2025-10-12 16:10:49] Starting ATLAS job with PandaID=6840428693
[2025-10-12 16:10:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:29:57 (18078): wrapper (7.7.26015): starting
16:29:57 (18078): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 16:29:57] Arguments: --nthreads 8
[2025-10-12 16:29:57] Threads: 8
[2025-10-12 16:29:57] This job has been restarted, cleaning up previous attempt
[2025-10-12 16:29:57] Checking for CVMFS
[2025-10-12 16:29:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:29:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:29:57] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:29:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:29:58] 2.11.2.0 2876 206327 78756 151636 3 49 12323744 20275201 1 130560 3 73543760 99.977 10708361 9866 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 16:29:58] CVMFS is ok
[2025-10-12 16:29:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 16:29:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 16:29:58] Further information can be found at the LHC@home message board.
[2025-10-12 16:29:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:29:58] Checking for apptainer binary...
[2025-10-12 16:29:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 16:29:58] Running /usr/bin/apptainer --version
[2025-10-12 16:29:58] apptainer version 1.3.2-1.el7
[2025-10-12 16:29:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:30:00] c-204-5.aglt2.org
[2025-10-12 16:30:00] apptainer works
[2025-10-12 16:30:00] Set ATHENA_PROC_NUMBER=8
[2025-10-12 16:30:00] Set ATHENA_CORE_NUMBER=8
[2025-10-12 16:30:00] Starting ATLAS job with PandaID=6840428693
[2025-10-12 16:30:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 18:40:34]  *** The last 200 lines of the pilot log: ***
[2025-10-12 18:40:34] 2025-10-12 22:39:35,627 | INFO     | monitor loop #570: job 0:6840428693 is in state 'finished'
[2025-10-12 18:40:34] 2025-10-12 22:39:35,627 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:40:34] 2025-10-12 22:39:36,182 | INFO     | time since job start (7760s) is within the limit (172800.0s)
[2025-10-12 18:40:34] 2025-10-12 22:39:37,878 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 18:40:34] 2025-10-12 22:39:37,882 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1695.875
[2025-10-12 18:40:34] 2025-10-12 22:39:37,884 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840428693/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 18:40:34] 2025-10-12 22:39:37,885 | INFO     | extracted standard info from prmon json
[2025-10-12 18:40:34] 2025-10-12 22:39:37,885 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 18:40:34] 2025-10-12 22:39:37,885 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 18:40:34] 2025-10-12 22:39:37,886 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 18:40:34] 2025-10-12 22:39:37,886 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 18:40:34] 2025-10-12 22:39:37,890 | INFO     | fitting pss+swap vs Time
[2025-10-12 18:40:34] 2025-10-12 22:39:37,890 | INFO     | sum of square deviations: 635130048.0
[2025-10-12 18:40:34] 2025-10-12 22:39:37,891 | INFO     | sum of deviations: -6264147888.999998
[2025-10-12 18:40:34] 2025-10-12 22:39:37,891 | INFO     | mean x: 1760304890.0
[2025-10-12 18:40:34] 2025-10-12 22:39:37,892 | INFO     | mean y: 2548101.503937008
[2025-10-12 18:40:34] 2025-10-12 22:39:37,892 | INFO     | -- intersect: 17364047837.523155
[2025-10-12 18:40:34] 2025-10-12 22:39:37,892 | INFO     | intersect: 17364047837.523155
[2025-10-12 18:40:34] 2025-10-12 22:39:37,892 | INFO     | chi2: 1.6114707370281443
[2025-10-12 18:40:34] 2025-10-12 22:39:37,893 | INFO     | sum of square deviations: 563026370.5
[2025-10-12 18:40:34] 2025-10-12 22:39:37,893 | INFO     | sum of deviations: -5503387090.499989
[2025-10-12 18:40:34] 2025-10-12 22:39:37,893 | INFO     | mean x: 1760304737.5
[2025-10-12 18:40:34] 2025-10-12 22:39:37,893 | INFO     | mean y: 2549711.3524590163
[2025-10-12 18:40:34] 2025-10-12 22:39:37,894 | INFO     | -- intersect: 17208916722.368813
[2025-10-12 18:40:34] 2025-10-12 22:39:37,894 | INFO     | intersect: 17208916722.368813
[2025-10-12 18:40:34] 2025-10-12 22:39:37,894 | INFO     | chi2: 1.6117113326965031
[2025-10-12 18:40:34] 2025-10-12 22:39:37,894 | INFO     | current chi2=1.6117113326965031 (change=-0.014930191584029761 %)
[2025-10-12 18:40:34] 2025-10-12 22:39:37,894 | INFO     | right removable region: 121
[2025-10-12 18:40:34] 2025-10-12 22:39:37,894 | INFO     | sum of square deviations: 563026370.5
[2025-10-12 18:40:34] 2025-10-12 22:39:37,895 | INFO     | sum of deviations: -25563694743.000015
[2025-10-12 18:40:34] 2025-10-12 22:39:37,895 | INFO     | mean x: 1760305042.5
[2025-10-12 18:40:34] 2025-10-12 22:39:37,895 | INFO     | mean y: 2588191.7868852457
[2025-10-12 18:40:34] 2025-10-12 22:39:37,895 | INFO     | -- intersect: 79927620337.38808
[2025-10-12 18:40:34] 2025-10-12 22:39:37,896 | INFO     | intersect: 79927620337.38808
[2025-10-12 18:40:34] 2025-10-12 22:39:37,896 | INFO     | chi2: 0.11693837346636515
[2025-10-12 18:40:34] 2025-10-12 22:39:37,896 | INFO     | current chi2=0.11693837346636515 (change=92.74337592490065 %)
[2025-10-12 18:40:34] 2025-10-12 22:39:37,896 | INFO     | sum of square deviations: 496597218.0
[2025-10-12 18:40:34] 2025-10-12 22:39:37,897 | INFO     | sum of deviations: -23285166440.0
[2025-10-12 18:40:34] 2025-10-12 22:39:37,897 | INFO     | mean x: 1760305195.0
[2025-10-12 18:40:34] 2025-10-12 22:39:37,897 | INFO     | mean y: 2582927.658119658
[2025-10-12 18:40:34] 2025-10-12 22:39:37,897 | INFO     | -- intersect: 82542311232.72418
[2025-10-12 18:40:34] 2025-10-12 22:39:37,897 | INFO     | intersect: 82542311232.72418
[2025-10-12 18:40:34] 2025-10-12 22:39:37,898 | INFO     | chi2: 0.1149604113851486
[2025-10-12 18:40:34] 2025-10-12 22:39:37,898 | INFO     | current chi2=0.1149604113851486 (change=1.691456809757548 %)
[2025-10-12 18:40:34] 2025-10-12 22:39:37,898 | INFO     | left removable region: 20
[2025-10-12 18:40:34] 2025-10-12 22:39:37,898 | INFO     | sum of square deviations: 319447850.0
[2025-10-12 18:40:34] 2025-10-12 22:39:37,898 | INFO     | sum of deviations: -15368790912.0
[2025-10-12 18:40:34] 2025-10-12 22:39:37,899 | INFO     | mean x: 1760305317.0
[2025-10-12 18:40:34] 2025-10-12 22:39:37,899 | INFO     | mean y: 2568379.089108911
[2025-10-12 18:40:34] 2025-10-12 22:39:37,899 | INFO     | -- intersect: 84691710466.77222
[2025-10-12 18:40:34] 2025-10-12 22:39:37,899 | INFO     | intersect: 84691710466.77222
[2025-10-12 18:40:34] 2025-10-12 22:39:37,899 | INFO     | chi2: 0.10482294559721365
[2025-10-12 18:40:34] 2025-10-12 22:39:37,899 | INFO     | -- intersect: 84691710466.77222
[2025-10-12 18:40:34] 2025-10-12 22:39:37,899 | INFO     | current memory leak: -48.11 B/s (using 101 data points, chi2=0.10)
[2025-10-12 18:40:34] 2025-10-12 22:39:37,900 | INFO     | could have reported an average CPU frequency of 1987 MHz (8 samples)
[2025-10-12 18:40:34] 2025-10-12 22:39:37,900 | INFO     | ..............................
[2025-10-12 18:40:34] 2025-10-12 22:39:37,900 | INFO     | . Timing measurements:
[2025-10-12 18:40:34] 2025-10-12 22:39:37,900 | INFO     | . get job = 0 s
[2025-10-12 18:40:34] 2025-10-12 22:39:37,900 | INFO     | . initial setup = 1 s
[2025-10-12 18:40:34] 2025-10-12 22:39:37,900 | INFO     | . payload setup = 8 s
[2025-10-12 18:40:34] 2025-10-12 22:39:37,901 | INFO     | . stage-in = 0 s
[2025-10-12 18:40:34] 2025-10-12 22:39:37,901 | INFO     | . payload execution = 7723 s
[2025-10-12 18:40:34] 2025-10-12 22:39:37,901 | INFO     | . stage-out = 0 s
[2025-10-12 18:40:34] 2025-10-12 22:39:37,901 | INFO     | . log creation = 0 s
[2025-10-12 18:40:34] 2025-10-12 22:39:37,901 | INFO     | ..............................
[2025-10-12 18:40:34] 2025-10-12 22:39:37,993 | INFO     | 
[2025-10-12 18:40:34] 2025-10-12 22:39:37,994 | INFO     | job summary report
[2025-10-12 18:40:34] 2025-10-12 22:39:37,994 | INFO     | --------------------------------------------------
[2025-10-12 18:40:34] 2025-10-12 22:39:37,994 | INFO     | PanDA job id: 6840428693
[2025-10-12 18:40:34] 2025-10-12 22:39:37,994 | INFO     | task id: 46676269
[2025-10-12 18:40:34] 2025-10-12 22:39:37,994 | INFO     | errors: (none)
[2025-10-12 18:40:34] 2025-10-12 22:39:37,994 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 18:40:34] 2025-10-12 22:39:37,995 | INFO     | pilot state: finished 
[2025-10-12 18:40:34] 2025-10-12 22:39:37,995 | INFO     | transexitcode: 0
[2025-10-12 18:40:34] 2025-10-12 22:39:37,995 | INFO     | exeerrorcode: 0
[2025-10-12 18:40:34] 2025-10-12 22:39:37,995 | INFO     | exeerrordiag: 
[2025-10-12 18:40:34] 2025-10-12 22:39:37,995 | INFO     | exitcode: 0
[2025-10-12 18:40:34] 2025-10-12 22:39:37,995 | INFO     | exitmsg: OK
[2025-10-12 18:40:34] 2025-10-12 22:39:37,996 | INFO     | cpuconsumptiontime: 57310 s
[2025-10-12 18:40:34] 2025-10-12 22:39:37,996 | INFO     | nevents: 400
[2025-10-12 18:40:34] 2025-10-12 22:39:37,996 | INFO     | neventsw: 0
[2025-10-12 18:40:34] 2025-10-12 22:39:37,996 | INFO     | pid: 28444
[2025-10-12 18:40:34] 2025-10-12 22:39:37,996 | INFO     | pgrp: 28444
[2025-10-12 18:40:34] 2025-10-12 22:39:37,996 | INFO     | corecount: 8
[2025-10-12 18:40:34] 2025-10-12 22:39:37,997 | INFO     | event service: False
[2025-10-12 18:40:34] 2025-10-12 22:39:37,997 | INFO     | sizes: {0: 2348629, 1: 2348884, 7: 2349146, 12: 2349174, 7735: 2376775, 7737: 2385773, 7739: 2385957, 7745: 2386151}
[2025-10-12 18:40:34] 2025-10-12 22:39:37,997 | INFO     | --------------------------------------------------
[2025-10-12 18:40:34] 2025-10-12 22:39:37,997 | INFO     | 
[2025-10-12 18:40:34] 2025-10-12 22:39:37,997 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 18:40:34] 2025-10-12 22:39:38,025 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 18:40:34] 2025-10-12 22:39:38,026 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 18:40:34] 2025-10-12 22:39:38,026 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 18:40:34] 2025-10-12 22:39:38,026 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 18:40:34] 2025-10-12 22:39:38,027 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 18:40:34] 2025-10-12 22:39:38,027 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 18:40:34] 2025-10-12 22:39:38,027 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 18:40:34] 2025-10-12 22:39:38,027 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 18:40:34] 2025-10-12 22:39:38,027 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 18:40:34] 2025-10-12 22:39:38,027 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 18:40:34] 2025-10-12 22:39:38,028 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 18:40:34] 2025-10-12 22:39:38,028 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 18:40:34] 2025-10-12 22:39:38,028 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 18:40:34] 2025-10-12 22:39:38,028 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 18:40:34] 2025-10-12 22:39:38,028 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 18:40:34] 2025-10-12 22:39:38,029 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 18:40:34] 2025-10-12 22:39:38,029 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 18:40:34] 2025-10-12 22:39:38,029 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 18:40:34] 2025-10-12 22:39:38,029 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 18:40:34] 2025-10-12 22:39:38,029 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 18:40:34] 2025-10-12 22:39:38,030 | INFO     | job 6840428693 has completed (purged errors)
[2025-10-12 18:40:34] 2025-10-12 22:39:38,030 | INFO     | overall cleanup function is called
[2025-10-12 18:40:34] 2025-10-12 22:39:39,038 | INFO     | --- collectZombieJob: --- 10, [28444]
[2025-10-12 18:40:34] 2025-10-12 22:39:39,038 | INFO     | zombie collector waiting for pid 28444
[2025-10-12 18:40:34] 2025-10-12 22:39:39,050 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 18:40:34] 2025-10-12 22:39:39,050 | INFO     | collected zombie processes
[2025-10-12 18:40:34] 2025-10-12 22:39:39,051 | INFO     | will attempt to kill all subprocesses of pid=28444
[2025-10-12 18:40:34] 2025-10-12 22:39:39,141 | INFO     | process IDs to be killed: [28444] (in reverse order)
[2025-10-12 18:40:34] 2025-10-12 22:39:39,269 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 18:40:34] 2025-10-12 22:39:39,269 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 18:40:34] 2025-10-12 22:39:39,273 | INFO     | did not find any defunct processes belonging to 28444
[2025-10-12 18:40:34] 2025-10-12 22:39:39,277 | INFO     | did not find any defunct processes belonging to 28444
[2025-10-12 18:40:34] 2025-10-12 22:39:39,277 | INFO     | ready for new job
[2025-10-12 18:40:34] 2025-10-12 22:39:39,277 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 18:40:34] 2025-10-12 22:39:39,279 | INFO     | ***************************************
[2025-10-12 18:40:34] 2025-10-12 22:39:39,279 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 18:40:34] 2025-10-12 22:39:39,280 | INFO     | ***************************************
[2025-10-12 18:40:34] 2025-10-12 22:39:39,280 | INFO     | 
[2025-10-12 18:40:34] 2025-10-12 22:39:39,280 | INFO     | architecture information:
[2025-10-12 18:40:34] 2025-10-12 22:39:39,281 | INFO     | executing command: cat /etc/os-release
[2025-10-12 18:40:34] 2025-10-12 22:39:39,300 | INFO     | cat /etc/os-release:
[2025-10-12 18:40:34] NAME="CentOS Linux"
[2025-10-12 18:40:34] VERSION="7 (Core)"
[2025-10-12 18:40:34] ID="centos"
[2025-10-12 18:40:34] ID_LIKE="rhel fedora"
[2025-10-12 18:40:34] VERSION_ID="7"
[2025-10-12 18:40:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 18:40:34] ANSI_COLOR="0;31"
[2025-10-12 18:40:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 18:40:34] HOME_URL="https://www.centos.org/"
[2025-10-12 18:40:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 18:40:34] 
[2025-10-12 18:40:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 18:40:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 18:40:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 18:40:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 18:40:34] 
[2025-10-12 18:40:34] 2025-10-12 22:39:39,300 | INFO     | ***************************************
[2025-10-12 18:40:34] 2025-10-12 22:39:39,803 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 18:40:34] 2025-10-12 22:39:39,823 | INFO     | sufficient remaining disk space (18671992832 B)
[2025-10-12 18:40:34] 2025-10-12 22:39:39,823 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 18:40:34] 2025-10-12 22:39:39,824 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 18:40:34] 2025-10-12 22:39:39,824 | INFO     | update_server=False
[2025-10-12 18:40:34] 2025-10-12 22:39:39,824 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 18:40:34] 2025-10-12 22:39:39,824 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:40:34] 2025-10-12 22:39:39,825 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:40:34] 2025-10-12 22:39:39,825 | INFO     | aborting loop
[2025-10-12 18:40:34] 2025-10-12 22:39:40,045 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 18:40:34] 2025-10-12 22:39:40,701 | INFO     | all payload control threads have been joined
[2025-10-12 18:40:34] 2025-10-12 22:39:40,706 | INFO     | all data control threads have been joined
[2025-10-12 18:40:34] 2025-10-12 22:39:40,828 | INFO     | [job] job monitor thread has finished
[2025-10-12 18:40:34] 2025-10-12 22:39:40,830 | INFO     | [job] retrieve thread has finished
[2025-10-12 18:40:34] 2025-10-12 22:39:40,830 | INFO     | [job] queue monitor thread has finished
[2025-10-12 18:40:34] 2025-10-12 22:39:40,856 | INFO     | [data] copytool_in thread has finished
[2025-10-12 18:40:34] 2025-10-12 22:39:40,869 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 18:40:34] 2025-10-12 22:39:41,003 | INFO     | all job control threads have been joined
[2025-10-12 18:40:34] 2025-10-12 22:39:41,261 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 18:40:34] 2025-10-12 22:39:41,469 | INFO     | [payload] failed_post thread has finished
[2025-10-12 18:40:34] 2025-10-12 22:39:41,706 | INFO     | [payload] control thread has finished
[2025-10-12 18:40:34] 2025-10-12 22:39:41,709 | INFO     | [data] control thread has finished
[2025-10-12 18:40:34] 2025-10-12 22:39:41,718 | INFO     | [job] validate thread has finished
[2025-10-12 18:40:34] 2025-10-12 22:39:42,008 | INFO     | [job] control thread has finished
[2025-10-12 18:40:34] 2025-10-12 22:39:42,050 | INFO     | [data] copytool_out thread has finished
[2025-10-12 18:40:34] 2025-10-12 22:39:42,159 | INFO     | [payload] validate_post thread has finished
[2025-10-12 18:40:34] 2025-10-12 22:39:42,306 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 18:40:34] 2025-10-12 22:39:42,736 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 18:40:34] 2025-10-12 22:39:46,742 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 18:40:34] 2025-10-12 22:39:50,815 | INFO     | job.realtimelogging is not enabled
[2025-10-12 18:40:34] 2025-10-12 22:39:51,821 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 18:40:34] 2025-10-12 22:40:09,396 | INFO     | PID=21981 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 18:40:34] 2025-10-12 22:40:09,397 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 18:40:34] 2025-10-12 22:40:09,397 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 18:40:34] 2025-10-12 22:40:09,397 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 18:40:34] 2025-10-12 22:40:28,183 | INFO     | [monitor] cgroup control has ended
[2025-10-12 18:40:34] 2025-10-12 22:40:29,502 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139929281398592)>', '<ExcThread(monitor, started 139928524535552)>']
[2025-10-12 18:40:34] 2025-10-12 22:40:30,496 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 18:40:34] 2025-10-12 22:40:30,496 | INFO     | [monitor] control thread has ended
[2025-10-12 18:40:34] 2025-10-12 22:40:34,528 | INFO     | all workflow threads have been joined
[2025-10-12 18:40:34] 2025-10-12 22:40:34,528 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 18:40:34] 2025-10-12 22:40:34,529 | INFO     | traces error code: 0
[2025-10-12 18:40:34] 2025-10-12 22:40:34,529 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 18:40:34] 2025-10-12 22:40:34,641 [wrapper] ==== pilot stdout END ====
[2025-10-12 18:40:34] 2025-10-12 22:40:34,645 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 18:40:34] 2025-10-12 22:40:34,651 [wrapper] pilotpid: 21981
[2025-10-12 18:40:34] 2025-10-12 22:40:34,656 [wrapper] Pilot exit status: 0
[2025-10-12 18:40:34] 2025-10-12 22:40:34,674 [wrapper] pandaids: 6840428693 6840428693
[2025-10-12 18:40:34] 2025-10-12 22:40:34,722 [wrapper] cleanup supervisor_pilot 15171 21982
[2025-10-12 18:40:34] 2025-10-12 22:40:34,727 [wrapper] Test setup, not cleaning
[2025-10-12 18:40:34] 2025-10-12 22:40:34,731 [wrapper] apfmon messages muted
[2025-10-12 18:40:34] 2025-10-12 22:40:34,736 [wrapper] ==== wrapper stdout END ====
[2025-10-12 18:40:34] 2025-10-12 22:40:34,741 [wrapper] ==== wrapper stderr END ====
[2025-10-12 18:40:34]  *** Error codes and diagnostics ***
[2025-10-12 18:40:34]     "exeErrorCode": 0,
[2025-10-12 18:40:34]     "exeErrorDiag": "",
[2025-10-12 18:40:34]     "pilotErrorCode": 0,
[2025-10-12 18:40:34]     "pilotErrorDiag": "",
[2025-10-12 18:40:34]  *** Listing of results directory ***
[2025-10-12 18:40:34] total 548624
[2025-10-12 18:40:34] drwx------ 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-12 18:40:34] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 12:49 pilot3.tar.gz
[2025-10-12 18:40:34] -rwx------ 1 boincer umatlas     36292 Oct 12 13:04 runpilot2-wrapper.sh
[2025-10-12 18:40:34] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 13:04 queuedata.json
[2025-10-12 18:40:34] -rw-r--r-- 1 boincer umatlas       100 Oct 12 16:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 18:40:34] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 16:10 run_atlas
[2025-10-12 18:40:34] -rw-r--r-- 1 boincer umatlas       105 Oct 12 16:10 job.xml
[2025-10-12 18:40:34] -rw-r--r-- 3 boincer umatlas 178759475 Oct 12 16:10 EVNT.46676267._004796.pool.root.1
[2025-10-12 18:40:34] -rw-r--r-- 3 boincer umatlas 178759475 Oct 12 16:10 ATLAS.root_0
[2025-10-12 18:40:34] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 16:10 start_atlas.sh
[2025-10-12 18:40:34] drwxrwx--x 2 boincer umatlas      4096 Oct 12 16:10 shared
[2025-10-12 18:40:34] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 16:10 input.tar.gz
[2025-10-12 18:40:34] -rw-r--r-- 1 boincer umatlas         0 Oct 12 16:10 boinc_lockfile
[2025-10-12 18:40:34] -rw------- 1 boincer umatlas   1560580 Oct 12 16:11 agis_ddmendpoints.agis.ALL.json
[2025-10-12 18:40:34] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 16:30 pandaJob.out
[2025-10-12 18:40:34] -rw------- 1 boincer umatlas    975536 Oct 12 16:30 agis_schedconf.cvmfs.json
[2025-10-12 18:40:34] -rw-r--r-- 1 boincer umatlas      5909 Oct 12 18:37 init_data.xml
[2025-10-12 18:40:34] -rw------- 1 boincer umatlas 197431318 Oct 12 18:38 HITS.46676269._084295.pool.root.1
[2025-10-12 18:40:34] -rw-r--r-- 1 boincer umatlas       529 Oct 12 18:39 boinc_task_state.xml
[2025-10-12 18:40:34] -rw------- 1 boincer umatlas      1047 Oct 12 18:39 memory_monitor_summary.json
[2025-10-12 18:40:34] -rw------- 1 boincer umatlas    377537 Oct 12 18:39 log.46676269._084295.job.log.tgz.1
[2025-10-12 18:40:34] -rw------- 1 boincer umatlas      7845 Oct 12 18:39 heartbeat.json
[2025-10-12 18:40:34] -rw------- 1 boincer umatlas        96 Oct 12 18:40 pilot_heartbeat.json
[2025-10-12 18:40:34] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 18:40 boinc_mmap_file
[2025-10-12 18:40:34] -rw-r--r-- 1 boincer umatlas        27 Oct 12 18:40 wrapper_checkpoint.txt
[2025-10-12 18:40:34] -rw------- 1 boincer umatlas      4818 Oct 12 18:40 pilotlog.txt
[2025-10-12 18:40:34] -rw------- 1 boincer umatlas   1088700 Oct 12 18:40 log.46676269._084295.job.log.1
[2025-10-12 18:40:34] -rw------- 1 boincer umatlas       357 Oct 12 18:40 output.list
[2025-10-12 18:40:34] -rw-r--r-- 1 boincer umatlas       620 Oct 12 18:40 runtime_log
[2025-10-12 18:40:34] -rw------- 1 boincer umatlas   1484800 Oct 12 18:40 result.tar.gz
[2025-10-12 18:40:34] -rw-r--r-- 1 boincer umatlas      8783 Oct 12 18:40 runtime_log.err
[2025-10-12 18:40:34] -rw------- 1 boincer umatlas       784 Oct 12 18:40 2t4LDmFgES8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmulkNDmxMkA4m.diag
[2025-10-12 18:40:34] -rw-r--r-- 1 boincer umatlas     23232 Oct 12 18:40 stderr.txt
[2025-10-12 18:40:34] HITS file was successfully produced:
[2025-10-12 18:40:34] -rw------- 1 boincer umatlas 197431318 Oct 12 18:38 shared/HITS.pool.root.1
[2025-10-12 18:40:34]  *** Contents of shared directory: ***
[2025-10-12 18:40:34] total 369412
[2025-10-12 18:40:34] -rw-r--r-- 3 boincer umatlas 178759475 Oct 12 16:10 ATLAS.root_0
[2025-10-12 18:40:34] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 16:10 start_atlas.sh
[2025-10-12 18:40:34] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 16:10 input.tar.gz
[2025-10-12 18:40:34] -rw------- 1 boincer umatlas 197431318 Oct 12 18:38 HITS.pool.root.1
[2025-10-12 18:40:34] -rw------- 1 boincer umatlas   1484800 Oct 12 18:40 result.tar.gz
18:40:36 (18078): run_atlas exited; CPU time 57249.451210
18:40:36 (18078): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN