Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:25:47 (233301): wrapper (7.7.26015): starting
18:25:47 (233301): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 18:25:47] Arguments: --nthreads 8
[2025-10-12 18:25:47] Threads: 8
[2025-10-12 18:25:47] Checking for CVMFS
[2025-10-12 18:25:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 18:25:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 18:25:49] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 18:25:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 18:25:50] 2.13.2.0 2408171 129843 271020 151640 3 501 28893335 32935936 19454 16776704 0 190568095 99.605 207391784 30488 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 18:25:50] CVMFS is ok
[2025-10-12 18:25:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 18:25:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 18:25:50] Further information can be found at the LHC@home message board.
[2025-10-12 18:25:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 18:25:50] Checking for apptainer binary...
[2025-10-12 18:25:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 18:25:51] Running /usr/bin/apptainer --version
[2025-10-12 18:25:51] apptainer version 1.4.3-1.el9
[2025-10-12 18:25:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 18:25:52] c6-5-7-3.aglt2.org
[2025-10-12 18:25:52] apptainer works
[2025-10-12 18:25:52] Set ATHENA_PROC_NUMBER=8
[2025-10-12 18:25:52] Set ATHENA_CORE_NUMBER=8
[2025-10-12 18:25:52] Starting ATLAS job with PandaID=6840390117
[2025-10-12 18:25:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:14:43]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:14:43] 2025-10-13 01:13:37,737 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2891.9306428571426
[2025-10-12 21:14:43] 2025-10-13 01:13:37,750 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6840390117/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 21:14:43] 2025-10-13 01:13:37,752 | INFO     | extracted standard info from prmon json
[2025-10-12 21:14:43] 2025-10-13 01:13:37,752 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 21:14:43] 2025-10-13 01:13:37,752 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 21:14:43] 2025-10-13 01:13:37,753 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 21:14:43] 2025-10-13 01:13:37,753 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 21:14:43] 2025-10-13 01:13:37,758 | INFO     | fitting pss+swap vs Time
[2025-10-12 21:14:43] 2025-10-13 01:13:37,758 | INFO     | sum of square deviations: 1270047170.7437482
[2025-10-12 21:14:43] 2025-10-13 01:13:37,759 | INFO     | sum of deviations: -28404945372.212482
[2025-10-12 21:14:43] 2025-10-13 01:13:37,759 | INFO     | mean x: 1760313061.68125
[2025-10-12 21:14:43] 2025-10-13 01:13:37,760 | INFO     | mean y: 2197972.6625
[2025-10-12 21:14:43] 2025-10-13 01:13:37,760 | INFO     | -- intersect: 39372071396.943855
[2025-10-12 21:14:43] 2025-10-13 01:13:37,760 | INFO     | intersect: 39372071396.943855
[2025-10-12 21:14:43] 2025-10-13 01:13:37,760 | INFO     | chi2: 3.857646318544819
[2025-10-12 21:14:43] 2025-10-13 01:13:37,761 | INFO     | sum of square deviations: 1154638767.6387038
[2025-10-12 21:14:43] 2025-10-13 01:13:37,762 | INFO     | sum of deviations: -16440012739.967749
[2025-10-12 21:14:43] 2025-10-13 01:13:37,762 | INFO     | mean x: 1760312909.167742
[2025-10-12 21:14:43] 2025-10-13 01:13:37,762 | INFO     | mean y: 2213486.806451613
[2025-10-12 21:14:43] 2025-10-13 01:13:37,762 | INFO     | -- intersect: 25065954168.431305
[2025-10-12 21:14:43] 2025-10-13 01:13:37,762 | INFO     | intersect: 25065954168.431305
[2025-10-12 21:14:43] 2025-10-13 01:13:37,763 | INFO     | chi2: 3.1055712891097915
[2025-10-12 21:14:43] 2025-10-13 01:13:37,763 | INFO     | current chi2=3.1055712891097915 (change=19.495696788468805 %)
[2025-10-12 21:14:43] 2025-10-13 01:13:37,763 | INFO     | right removable region: 154
[2025-10-12 21:14:43] 2025-10-13 01:13:37,763 | INFO     | sum of square deviations: 1154650115.574192
[2025-10-12 21:14:43] 2025-10-13 01:13:37,765 | INFO     | sum of deviations: -59967568912.92259
[2025-10-12 21:14:43] 2025-10-13 01:13:37,765 | INFO     | mean x: 1760313214.1870968
[2025-10-12 21:14:43] 2025-10-13 01:13:37,765 | INFO     | mean y: 2239381.2387096775
[2025-10-12 21:14:43] 2025-10-13 01:13:37,765 | INFO     | -- intersect: 91425348907.01793
[2025-10-12 21:14:43] 2025-10-13 01:13:37,765 | INFO     | intersect: 91425348907.01793
[2025-10-12 21:14:43] 2025-10-13 01:13:37,765 | INFO     | chi2: 1.4719364382180236
[2025-10-12 21:14:43] 2025-10-13 01:13:37,766 | INFO     | current chi2=1.4719364382180236 (change=61.84366536812874 %)
[2025-10-12 21:14:43] 2025-10-13 01:13:37,766 | INFO     | sum of square deviations: 1046471830.2733352
[2025-10-12 21:14:43] 2025-10-13 01:13:37,767 | INFO     | sum of deviations: -67462594101.51997
[2025-10-12 21:14:43] 2025-10-13 01:13:37,767 | INFO     | mean x: 1760313366.6866667
[2025-10-12 21:14:43] 2025-10-13 01:13:37,767 | INFO     | mean y: 2249832.84
[2025-10-12 21:14:43] 2025-10-13 01:13:37,767 | INFO     | -- intersect: 113483857949.55745
[2025-10-12 21:14:43] 2025-10-13 01:13:37,768 | INFO     | intersect: 113483857949.55745
[2025-10-12 21:14:43] 2025-10-13 01:13:37,768 | INFO     | chi2: 1.178726741681283
[2025-10-12 21:14:43] 2025-10-13 01:13:37,768 | INFO     | current chi2=1.178726741681283 (change=19.919997149585495 %)
[2025-10-12 21:14:43] 2025-10-13 01:13:37,768 | INFO     | left removable region: 20
[2025-10-12 21:14:43] 2025-10-13 01:13:37,768 | INFO     | sum of square deviations: 746032185.8880595
[2025-10-12 21:14:43] 2025-10-13 01:13:37,769 | INFO     | sum of deviations: -43507622421.95523
[2025-10-12 21:14:43] 2025-10-13 01:13:37,770 | INFO     | mean x: 1760313488.664179
[2025-10-12 21:14:43] 2025-10-13 01:13:37,770 | INFO     | mean y: 2250631.1343283583
[2025-10-12 21:14:43] 2025-10-13 01:13:37,770 | INFO     | -- intersect: 102661433515.99661
[2025-10-12 21:14:43] 2025-10-13 01:13:37,770 | INFO     | intersect: 102661433515.99661
[2025-10-12 21:14:43] 2025-10-13 01:13:37,770 | INFO     | chi2: 0.3586666030080189
[2025-10-12 21:14:43] 2025-10-13 01:13:37,770 | INFO     | -- intersect: 102661433515.99661
[2025-10-12 21:14:43] 2025-10-13 01:13:37,771 | INFO     | current memory leak: -58.32 B/s (using 134 data points, chi2=0.36)
[2025-10-12 21:14:43] 2025-10-13 01:13:37,771 | INFO     | could have reported an average CPU frequency of 2853 MHz (9 samples)
[2025-10-12 21:14:43] 2025-10-13 01:13:37,772 | INFO     | ..............................
[2025-10-12 21:14:43] 2025-10-13 01:13:37,772 | INFO     | . Timing measurements:
[2025-10-12 21:14:43] 2025-10-13 01:13:37,772 | INFO     | . get job = 1 s
[2025-10-12 21:14:43] 2025-10-13 01:13:37,772 | INFO     | . initial setup = 9 s
[2025-10-12 21:14:43] 2025-10-13 01:13:37,772 | INFO     | . payload setup = 52 s
[2025-10-12 21:14:43] 2025-10-13 01:13:37,772 | INFO     | . stage-in = 1 s
[2025-10-12 21:14:43] 2025-10-13 01:13:37,772 | INFO     | . payload execution = 9786 s
[2025-10-12 21:14:43] 2025-10-13 01:13:37,772 | INFO     | . stage-out = 6 s
[2025-10-12 21:14:43] 2025-10-13 01:13:37,772 | INFO     | . log creation = 1 s
[2025-10-12 21:14:43] 2025-10-13 01:13:37,773 | INFO     | ..............................
[2025-10-12 21:14:43] 2025-10-13 01:13:38,234 | INFO     | time since job start (9980s) is within the limit (172800.0s)
[2025-10-12 21:14:43] 2025-10-13 01:13:38,235 | INFO     | 
[2025-10-12 21:14:43] 2025-10-13 01:13:38,235 | INFO     | job summary report
[2025-10-12 21:14:43] 2025-10-13 01:13:38,235 | INFO     | --------------------------------------------------
[2025-10-12 21:14:43] 2025-10-13 01:13:38,235 | INFO     | PanDA job id: 6840390117
[2025-10-12 21:14:43] 2025-10-13 01:13:38,235 | INFO     | task id: 46676269
[2025-10-12 21:14:43] 2025-10-13 01:13:38,235 | INFO     | errors: (none)
[2025-10-12 21:14:43] 2025-10-13 01:13:38,235 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 21:14:43] 2025-10-13 01:13:38,235 | INFO     | pilot state: finished 
[2025-10-12 21:14:43] 2025-10-13 01:13:38,235 | INFO     | transexitcode: 0
[2025-10-12 21:14:43] 2025-10-13 01:13:38,235 | INFO     | exeerrorcode: 0
[2025-10-12 21:14:43] 2025-10-13 01:13:38,235 | INFO     | exeerrordiag: 
[2025-10-12 21:14:43] 2025-10-13 01:13:38,236 | INFO     | exitcode: 0
[2025-10-12 21:14:43] 2025-10-13 01:13:38,236 | INFO     | exitmsg: OK
[2025-10-12 21:14:43] 2025-10-13 01:13:38,236 | INFO     | cpuconsumptiontime: 38280 s
[2025-10-12 21:14:43] 2025-10-13 01:13:38,236 | INFO     | nevents: 400
[2025-10-12 21:14:43] 2025-10-13 01:13:38,236 | INFO     | neventsw: 0
[2025-10-12 21:14:43] 2025-10-13 01:13:38,236 | INFO     | pid: 258109
[2025-10-12 21:14:43] 2025-10-13 01:13:38,236 | INFO     | pgrp: 258109
[2025-10-12 21:14:43] 2025-10-13 01:13:38,236 | INFO     | corecount: 8
[2025-10-12 21:14:43] 2025-10-13 01:13:38,236 | INFO     | event service: False
[2025-10-12 21:14:43] 2025-10-13 01:13:38,236 | INFO     | sizes: {0: 2348029, 1: 2348714, 2: 2348742, 3: 2348941, 4: 2348941, 15: 2348969, 26: 2349125, 37: 2349153, 46: 2349443, 49: 2349471, 9845: 2377893, 9846: 2378172, 
[2025-10-12 21:14:43] 2025-10-13 01:13:38,236 | INFO     | --------------------------------------------------
[2025-10-12 21:14:43] 2025-10-13 01:13:38,236 | INFO     | 
[2025-10-12 21:14:43] 2025-10-13 01:13:38,236 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 21:14:43] 2025-10-13 01:13:38,266 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 21:14:43] 2025-10-13 01:13:38,266 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 21:14:43] 2025-10-13 01:13:38,266 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 21:14:43] 2025-10-13 01:13:38,266 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 21:14:43] 2025-10-13 01:13:38,266 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 21:14:43] 2025-10-13 01:13:38,266 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 21:14:43] 2025-10-13 01:13:38,266 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 21:14:43] 2025-10-13 01:13:38,267 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 21:14:43] 2025-10-13 01:13:38,267 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 21:14:43] 2025-10-13 01:13:38,267 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 21:14:43] 2025-10-13 01:13:38,267 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 21:14:43] 2025-10-13 01:13:38,267 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 21:14:43] 2025-10-13 01:13:38,267 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 21:14:43] 2025-10-13 01:13:38,267 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 21:14:43] 2025-10-13 01:13:38,267 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 21:14:43] 2025-10-13 01:13:38,267 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 21:14:43] 2025-10-13 01:13:38,267 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 21:14:43] 2025-10-13 01:13:38,267 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 21:14:43] 2025-10-13 01:13:38,267 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 21:14:43] 2025-10-13 01:13:38,267 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 21:14:43] 2025-10-13 01:13:38,268 | INFO     | job 6840390117 has completed (purged errors)
[2025-10-12 21:14:43] 2025-10-13 01:13:38,268 | INFO     | overall cleanup function is called
[2025-10-12 21:14:43] 2025-10-13 01:13:39,300 | INFO     | --- collectZombieJob: --- 10, [258109]
[2025-10-12 21:14:43] 2025-10-13 01:13:39,300 | INFO     | zombie collector waiting for pid 258109
[2025-10-12 21:14:43] 2025-10-13 01:13:39,301 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 21:14:43] 2025-10-13 01:13:39,301 | INFO     | collected zombie processes
[2025-10-12 21:14:43] 2025-10-13 01:13:39,301 | INFO     | will attempt to kill all subprocesses of pid=258109
[2025-10-12 21:14:43] 2025-10-13 01:13:40,213 | INFO     | PID=238886 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 21:14:43] 2025-10-13 01:13:40,213 | INFO     | .. there are 29 such processes running
[2025-10-12 21:14:43] 2025-10-13 01:13:40,220 | INFO     | process IDs to be killed: [258109] (in reverse order)
[2025-10-12 21:14:43] 2025-10-13 01:13:40,342 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 21:14:43] 2025-10-13 01:13:40,343 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:14:43] 2025-10-13 01:13:40,360 | INFO     | did not find any defunct processes belonging to 258109
[2025-10-12 21:14:43] 2025-10-13 01:13:40,375 | INFO     | did not find any defunct processes belonging to 258109
[2025-10-12 21:14:43] 2025-10-13 01:13:40,376 | INFO     | ready for new job
[2025-10-12 21:14:43] 2025-10-13 01:13:40,376 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:14:43] 2025-10-13 01:13:40,378 | INFO     | ***************************************
[2025-10-12 21:14:43] 2025-10-13 01:13:40,378 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:14:43] 2025-10-13 01:13:40,378 | INFO     | ***************************************
[2025-10-12 21:14:43] 2025-10-13 01:13:40,378 | INFO     | 
[2025-10-12 21:14:43] 2025-10-13 01:13:40,393 | INFO     | architecture information:
[2025-10-12 21:14:43] 2025-10-13 01:13:40,394 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:14:43] 2025-10-13 01:13:40,411 | INFO     | cat /etc/os-release:
[2025-10-12 21:14:43] NAME="CentOS Linux"
[2025-10-12 21:14:43] VERSION="7 (Core)"
[2025-10-12 21:14:43] ID="centos"
[2025-10-12 21:14:43] ID_LIKE="rhel fedora"
[2025-10-12 21:14:43] VERSION_ID="7"
[2025-10-12 21:14:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:14:43] ANSI_COLOR="0;31"
[2025-10-12 21:14:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:14:43] HOME_URL="https://www.centos.org/"
[2025-10-12 21:14:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:14:43] 
[2025-10-12 21:14:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:14:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:14:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:14:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:14:43] 
[2025-10-12 21:14:43] 2025-10-13 01:13:40,412 | INFO     | ***************************************
[2025-10-12 21:14:43] 2025-10-13 01:13:40,915 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 21:14:43] 2025-10-13 01:13:41,063 | INFO     | sufficient remaining disk space (75301388288 B)
[2025-10-12 21:14:43] 2025-10-13 01:13:41,064 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:14:43] 2025-10-13 01:13:41,064 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:14:43] 2025-10-13 01:13:41,064 | INFO     | update_server=False
[2025-10-12 21:14:43] 2025-10-13 01:13:41,064 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:14:43] 2025-10-13 01:13:41,066 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:14:43] 2025-10-13 01:13:41,076 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-12 21:14:43] 2025-10-13 01:13:41,077 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:14:43] 2025-10-13 01:13:41,077 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:14:43] 2025-10-13 01:13:41,077 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:14:43] 2025-10-13 01:13:41,357 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 21:14:43] 2025-10-13 01:13:41,357 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 21:14:43] 2025-10-13 01:13:41,358 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:14:43] 2025-10-13 01:13:41,358 | INFO     | will abort loop
[2025-10-12 21:14:43] 2025-10-13 01:13:42,070 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:14:43] 2025-10-13 01:13:42,103 | INFO     | all data control threads have been joined
[2025-10-12 21:14:43] 2025-10-13 01:13:42,231 | INFO     | all payload control threads have been joined
[2025-10-12 21:14:43] 2025-10-13 01:13:42,238 | INFO     | [job] validate thread has finished
[2025-10-12 21:14:43] 2025-10-13 01:13:42,276 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:14:43] 2025-10-13 01:13:42,363 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:14:43] 2025-10-13 01:13:42,598 | INFO     | all job control threads have been joined
[2025-10-12 21:14:43] 2025-10-13 01:13:42,701 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:14:43] 2025-10-13 01:13:42,886 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:14:43] 2025-10-13 01:13:42,887 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:14:43] 2025-10-13 01:13:42,932 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:14:43] 2025-10-13 01:13:43,077 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:14:43] 2025-10-13 01:13:43,111 | INFO     | [data] control thread has finished
[2025-10-12 21:14:43] 2025-10-13 01:13:43,205 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:14:43] 2025-10-13 01:13:43,212 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:14:43] 2025-10-13 01:13:43,237 | INFO     | [payload] control thread has finished
[2025-10-12 21:14:43] 2025-10-13 01:13:43,336 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:14:43] 2025-10-13 01:13:43,604 | INFO     | [job] control thread has finished
[2025-10-12 21:14:43] 2025-10-13 01:13:43,943 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:14:43] 2025-10-13 01:13:44,531 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:14:43] 2025-10-13 01:13:48,540 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:14:43] 2025-10-13 01:14:34,626 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:14:43] 2025-10-13 01:14:35,435 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140424842270528)>', '<ExcThread(monitor, started 140424064780032)>']
[2025-10-12 21:14:43] 2025-10-13 01:14:35,594 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:14:43] 2025-10-13 01:14:35,594 | INFO     | [monitor] control thread has ended
[2025-10-12 21:14:43] 2025-10-13 01:14:40,461 | INFO     | all workflow threads have been joined
[2025-10-12 21:14:43] 2025-10-13 01:14:40,461 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:14:43] 2025-10-13 01:14:40,462 | INFO     | traces error code: 0
[2025-10-12 21:14:43] 2025-10-13 01:14:40,462 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:14:43] 2025-10-13 01:14:41,527 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:14:43] 2025-10-13 01:14:41,563 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:14:43] 2025-10-13 01:14:41,624 [wrapper] pilotpid: 238886
[2025-10-12 21:14:43] 2025-10-13 01:14:41,643 [wrapper] Pilot exit status: 0
[2025-10-12 21:14:43] 2025-10-13 01:14:41,805 [wrapper] pandaids: 6840390117
[2025-10-12 21:14:43] 2025-10-13 01:14:42,252 [wrapper] cleanup supervisor_pilot  988814 238887
[2025-10-12 21:14:43] 2025-10-13 01:14:42,276 [wrapper] Test setup, not cleaning
[2025-10-12 21:14:43] 2025-10-13 01:14:42,301 [wrapper] apfmon messages muted
[2025-10-12 21:14:43] 2025-10-13 01:14:42,334 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:14:43] 2025-10-13 01:14:42,434 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:14:43]  *** Error codes and diagnostics ***
[2025-10-12 21:14:43]     "exeErrorCode": 0,
[2025-10-12 21:14:43]     "exeErrorDiag": "",
[2025-10-12 21:14:43]     "pilotErrorCode": 0,
[2025-10-12 21:14:43]     "pilotErrorDiag": "",
[2025-10-12 21:14:43]  *** Listing of results directory ***
[2025-10-12 21:14:43] total 414076
[2025-10-12 21:14:43] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 12:01 pilot3.tar.gz
[2025-10-12 21:14:43] -rwx------. 1 boincer umatlas     36292 Oct 12 12:16 runpilot2-wrapper.sh
[2025-10-12 21:14:43] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 12:16 queuedata.json
[2025-10-12 21:14:43] -rw-r--r--. 1 boincer umatlas       100 Oct 12 18:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:14:43] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 18:25 run_atlas
[2025-10-12 21:14:43] -rw-r--r--. 1 boincer umatlas       105 Oct 12 18:25 job.xml
[2025-10-12 21:14:43] -rw-r--r--. 2 boincer umatlas 223507449 Oct 12 18:25 EVNT.46676267._004732.pool.root.1
[2025-10-12 21:14:43] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 18:25 shared
[2025-10-12 21:14:43] -rw-r--r--. 2 boincer umatlas    569676 Oct 12 18:25 input.tar.gz
[2025-10-12 21:14:43] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 18:25 start_atlas.sh
[2025-10-12 21:14:43] -rw-r--r--. 1 boincer umatlas         0 Oct 12 18:25 boinc_lockfile
[2025-10-12 21:14:43] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 18:25 pandaJob.out
[2025-10-12 21:14:43] -rw-------. 1 boincer umatlas    975603 Oct 12 18:27 agis_schedconf.cvmfs.json
[2025-10-12 21:14:43] -rw-------. 1 boincer umatlas   1560580 Oct 12 18:27 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:14:43] drwx------. 5 boincer umatlas      4096 Oct 12 18:27 pilot3
[2025-10-12 21:14:43] -rw-------. 1 boincer umatlas 193362192 Oct 12 21:11 HITS.46676269._083243.pool.root.1
[2025-10-12 21:14:43] -rw-r--r--. 1 boincer umatlas       530 Oct 12 21:11 boinc_task_state.xml
[2025-10-12 21:14:43] -rw-r--r--. 1 boincer umatlas      6841 Oct 12 21:12 init_data.xml
[2025-10-12 21:14:43] -rw-------. 1 boincer umatlas      1055 Oct 12 21:12 memory_monitor_summary.json
[2025-10-12 21:14:43] -rw-------. 1 boincer umatlas    389511 Oct 12 21:12 log.46676269._083243.job.log.tgz.1
[2025-10-12 21:14:43] -rw-------. 1 boincer umatlas        95 Oct 12 21:13 pilot_heartbeat.json
[2025-10-12 21:14:43] -rw-------. 1 boincer umatlas      7829 Oct 12 21:13 heartbeat.json
[2025-10-12 21:14:43] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 21:14 boinc_mmap_file
[2025-10-12 21:14:43] -rw-r--r--. 1 boincer umatlas        27 Oct 12 21:14 wrapper_checkpoint.txt
[2025-10-12 21:14:43] -rw-------. 1 boincer umatlas      4738 Oct 12 21:14 pilotlog.txt
[2025-10-12 21:14:43] -rw-------. 1 boincer umatlas   1225726 Oct 12 21:14 log.46676269._083243.job.log.1
[2025-10-12 21:14:43] -rw-------. 1 boincer umatlas       357 Oct 12 21:14 output.list
[2025-10-12 21:14:43] -rw-r--r--. 1 boincer umatlas       620 Oct 12 21:14 runtime_log
[2025-10-12 21:14:43] -rw-------. 1 boincer umatlas   1638400 Oct 12 21:14 result.tar.gz
[2025-10-12 21:14:43] -rw-r--r--. 1 boincer umatlas      8704 Oct 12 21:14 runtime_log.err
[2025-10-12 21:14:43] -rw-------. 1 boincer umatlas       654 Oct 12 21:14 4eEODmVvDS8n9Rq4apOajLDm4fhM0noT9bVof3QYDm0OUMDmA1pIWm.diag
[2025-10-12 21:14:43] -rw-r--r--. 1 boincer umatlas     21252 Oct 12 21:14 stderr.txt
[2025-10-12 21:14:43] HITS file was successfully produced:
[2025-10-12 21:14:43] -rw-------. 1 boincer umatlas 193362192 Oct 12 21:11 shared/HITS.pool.root.1
[2025-10-12 21:14:43]  *** Contents of shared directory: ***
[2025-10-12 21:14:43] total 409288
[2025-10-12 21:14:43] -rw-r--r--. 2 boincer umatlas 223507449 Oct 12 18:25 ATLAS.root_0
[2025-10-12 21:14:43] -rw-r--r--. 2 boincer umatlas    569676 Oct 12 18:25 input.tar.gz
[2025-10-12 21:14:43] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 18:25 start_atlas.sh
[2025-10-12 21:14:43] -rw-------. 1 boincer umatlas 193362192 Oct 12 21:11 HITS.pool.root.1
[2025-10-12 21:14:43] -rw-------. 1 boincer umatlas   1638400 Oct 12 21:14 result.tar.gz
21:14:44 (233301): run_atlas exited; CPU time 38546.648312
21:14:44 (233301): called boinc_finish(0)

</stderr_txt>
]]>

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