Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:41:23 (676342): wrapper (7.7.26015): starting
04:41:23 (676342): wrapper: running run_atlas (--nthreads 6)
[2025-10-13 04:41:23] Arguments: --nthreads 6
[2025-10-13 04:41:23] Threads: 6
[2025-10-13 04:41:23] Checking for CVMFS
[2025-10-13 04:41:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 04:41:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 04:41:23] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 04:41:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 04:41:23] 2.13.2.0 646812 52 54992 151645 3 57 16373641 81920000 0 130560 0 70053 99.996 2660 2015 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://147.213.204.101:3128 1
[2025-10-13 04:41:23] CVMFS is ok
[2025-10-13 04:41:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 04:41:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 04:41:23] Further information can be found at the LHC@home message board.
[2025-10-13 04:41:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 04:41:23] Checking for apptainer binary...
[2025-10-13 04:41:23] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/var/lib/snapd/snap/bin)
[2025-10-13 04:41:23] apptainer is not installed, using version from CVMFS
[2025-10-13 04:41:23] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 04:41:23] monitor-atlas.iep
[2025-10-13 04:41:23] apptainer works
[2025-10-13 04:41:23] Set ATHENA_PROC_NUMBER=6
[2025-10-13 04:41:23] Set ATHENA_CORE_NUMBER=6
[2025-10-13 04:41:23] Starting ATLAS job with PandaID=6840428481
[2025-10-13 04:41:23] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:31:37]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:31:37]  replicas=None
[2025-10-13 05:31:37]  scope=mc23_13p6TeV
[2025-10-13 05:31:37]  status=None
[2025-10-13 05:31:37]  status_code=0
[2025-10-13 05:31:37]  storage_token=
[2025-10-13 05:31:37]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6840428481/log.46676269._084083.job.log.tgz.1
[2025-10-13 05:31:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7b/32/log.46676269._084083.job.log.tgz.1
[2025-10-13 05:31:37]  workdir=None
[2025-10-13 05:31:37] ]
[2025-10-13 05:31:37] 2025-10-13 03:30:59,064 | INFO     | transferring file log.46676269._084083.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6840428481/log.46676269._084083.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-13 05:31:37] 2025-10-13 03:30:59,064 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6840428481/log.46676269._084083.job.log.tgz.1 /var/lib/boinc/slots/1/log.46676269._084083.job
[2025-10-13 05:31:37] 2025-10-13 03:30:59,071 | INFO     | adding to output.list: log.46676269._084083.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7b/32/log.46676269._084083.job.log.tg
[2025-10-13 05:31:37] 2025-10-13 03:30:59,071 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 05:31:37] 2025-10-13 03:30:59,072 | INFO     | summary of transferred files:
[2025-10-13 05:31:37] 2025-10-13 03:30:59,072 | INFO     |  -- lfn=log.46676269._084083.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 05:31:37] 2025-10-13 03:30:59,072 | INFO     | stage-out finished correctly
[2025-10-13 05:31:37] 2025-10-13 03:30:59,638 | INFO     | monitor loop #229: job 0:6840428481 is in state 'finished'
[2025-10-13 05:31:37] 2025-10-13 03:30:59,638 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:31:37] 2025-10-13 03:31:00,226 | INFO     | time since job start (2973s) is within the limit (172800.0s)
[2025-10-13 05:31:37] 2025-10-13 03:31:01,249 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 05:31:37] 2025-10-13 03:31:01,785 | INFO     | job 6840428481 has state=finished
[2025-10-13 05:31:37] 2025-10-13 03:31:01,785 | INFO     | preparing for final server update for job 6840428481 in state='finished'
[2025-10-13 05:31:37] 2025-10-13 03:31:01,785 | INFO     | this job has now completed (state=finished)
[2025-10-13 05:31:37] 2025-10-13 03:31:01,785 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 05:31:37] 2025-10-13 03:31:01,785 | INFO     | log transfer has been attempted: DONE
[2025-10-13 05:31:37] 2025-10-13 03:31:01,785 | INFO     | job 6840428481 has finished - writing final server update
[2025-10-13 05:31:37] 2025-10-13 03:31:01,785 | INFO     | total number of processed events: 400 (read)
[2025-10-13 05:31:37] 2025-10-13 03:31:01,786 | INFO     | executing command: lscpu
[2025-10-13 05:31:37] 2025-10-13 03:31:01,794 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 05:31:37] 2025-10-13 03:31:02,141 | INFO     | monitor loop #230: job 0:6840428481 is in state 'finished'
[2025-10-13 05:31:37] 2025-10-13 03:31:02,141 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:31:37] 2025-10-13 03:31:02,232 | INFO     | time since job start (2975s) is within the limit (172800.0s)
[2025-10-13 05:31:37] 2025-10-13 03:31:04,236 | INFO     | time since job start (2977s) is within the limit (172800.0s)
[2025-10-13 05:31:37] 2025-10-13 03:31:04,643 | INFO     | monitor loop #231: job 0:6840428481 is in state 'finished'
[2025-10-13 05:31:37] 2025-10-13 03:31:04,643 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:31:37] 2025-10-13 03:31:05,163 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 05:31:37] 2025-10-13 03:31:05,164 | INFO     | found 6 cores (6 cores per socket, 1 socket) , CPU MHz: 4300.046333333333
[2025-10-13 05:31:37] 2025-10-13 03:31:05,164 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6840428481/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:31:37] 2025-10-13 03:31:05,165 | INFO     | extracted standard info from prmon json
[2025-10-13 05:31:37] 2025-10-13 03:31:05,165 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 05:31:37] 2025-10-13 03:31:05,165 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 05:31:37] 2025-10-13 03:31:05,165 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 05:31:37] 2025-10-13 03:31:05,165 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 05:31:37] 2025-10-13 03:31:05,165 | INFO     | fitting pss+swap vs Time
[2025-10-13 05:31:37] 2025-10-13 03:31:05,165 | INFO     | sum of square deviations: 22960430.5
[2025-10-13 05:31:37] 2025-10-13 03:31:05,165 | INFO     | sum of deviations: -4487218529.5
[2025-10-13 05:31:37] 2025-10-13 03:31:05,166 | INFO     | mean x: 1760324859.5
[2025-10-13 05:31:37] 2025-10-13 03:31:05,166 | INFO     | mean y: 2776933.261904762
[2025-10-13 05:31:37] 2025-10-13 03:31:05,166 | INFO     | -- intersect: 344027786720.7693
[2025-10-13 05:31:37] 2025-10-13 03:31:05,166 | INFO     | intersect: 344027786720.7693
[2025-10-13 05:31:37] 2025-10-13 03:31:05,166 | INFO     | chi2: 0.0876568244527912
[2025-10-13 05:31:37] 2025-10-13 03:31:05,166 | INFO     | -- intersect: 344027786720.7693
[2025-10-13 05:31:37] 2025-10-13 03:31:05,166 | INFO     | current memory leak: -195.43 B/s (using 42 data points, chi2=0.09)
[2025-10-13 05:31:37] 2025-10-13 03:31:05,166 | INFO     | could have reported an average CPU frequency of 4300 MHz (5 samples)
[2025-10-13 05:31:37] 2025-10-13 03:31:05,166 | INFO     | ..............................
[2025-10-13 05:31:37] 2025-10-13 03:31:05,166 | INFO     | . Timing measurements:
[2025-10-13 05:31:37] 2025-10-13 03:31:05,166 | INFO     | . get job = 0 s
[2025-10-13 05:31:37] 2025-10-13 03:31:05,166 | INFO     | . initial setup = 1 s
[2025-10-13 05:31:37] 2025-10-13 03:31:05,166 | INFO     | . payload setup = 2 s
[2025-10-13 05:31:37] 2025-10-13 03:31:05,166 | INFO     | . stage-in = 0 s
[2025-10-13 05:31:37] 2025-10-13 03:31:05,166 | INFO     | . payload execution = 2952 s
[2025-10-13 05:31:37] 2025-10-13 03:31:05,166 | INFO     | . stage-out = 0 s
[2025-10-13 05:31:37] 2025-10-13 03:31:05,166 | INFO     | . log creation = 0 s
[2025-10-13 05:31:37] 2025-10-13 03:31:05,166 | INFO     | ..............................
[2025-10-13 05:31:37] 2025-10-13 03:31:05,198 | INFO     | 
[2025-10-13 05:31:37] 2025-10-13 03:31:05,198 | INFO     | job summary report
[2025-10-13 05:31:37] 2025-10-13 03:31:05,198 | INFO     | --------------------------------------------------
[2025-10-13 05:31:37] 2025-10-13 03:31:05,198 | INFO     | PanDA job id: 6840428481
[2025-10-13 05:31:37] 2025-10-13 03:31:05,198 | INFO     | task id: 46676269
[2025-10-13 05:31:37] 2025-10-13 03:31:05,198 | INFO     | errors: (none)
[2025-10-13 05:31:37] 2025-10-13 03:31:05,198 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:31:37] 2025-10-13 03:31:05,198 | INFO     | pilot state: finished 
[2025-10-13 05:31:37] 2025-10-13 03:31:05,198 | INFO     | transexitcode: 0
[2025-10-13 05:31:37] 2025-10-13 03:31:05,198 | INFO     | exeerrorcode: 0
[2025-10-13 05:31:37] 2025-10-13 03:31:05,198 | INFO     | exeerrordiag: 
[2025-10-13 05:31:37] 2025-10-13 03:31:05,198 | INFO     | exitcode: 0
[2025-10-13 05:31:37] 2025-10-13 03:31:05,198 | INFO     | exitmsg: OK
[2025-10-13 05:31:37] 2025-10-13 03:31:05,198 | INFO     | cpuconsumptiontime: 16652 s
[2025-10-13 05:31:37] 2025-10-13 03:31:05,198 | INFO     | nevents: 400
[2025-10-13 05:31:37] 2025-10-13 03:31:05,198 | INFO     | neventsw: 0
[2025-10-13 05:31:37] 2025-10-13 03:31:05,198 | INFO     | pid: 686585
[2025-10-13 05:31:37] 2025-10-13 03:31:05,198 | INFO     | pgrp: 686585
[2025-10-13 05:31:37] 2025-10-13 03:31:05,198 | INFO     | corecount: 6
[2025-10-13 05:31:37] 2025-10-13 03:31:05,198 | INFO     | event service: False
[2025-10-13 05:31:37] 2025-10-13 03:31:05,198 | INFO     | sizes: {0: 2348635, 1: 2348834, 2: 2349096, 11: 2349124, 2958: 2374549, 2959: 2383547, 2961: 2383731, 2965: 2383957}
[2025-10-13 05:31:37] 2025-10-13 03:31:05,198 | INFO     | --------------------------------------------------
[2025-10-13 05:31:37] 2025-10-13 03:31:05,198 | INFO     | 
[2025-10-13 05:31:37] 2025-10-13 03:31:05,198 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-13 05:31:37] 2025-10-13 03:31:05,209 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:31:37] 2025-10-13 03:31:05,209 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:31:37] 2025-10-13 03:31:05,209 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:31:37] 2025-10-13 03:31:05,209 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:31:37] 2025-10-13 03:31:05,209 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:31:37] 2025-10-13 03:31:05,209 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:31:37] 2025-10-13 03:31:05,209 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:31:37] 2025-10-13 03:31:05,210 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:31:37] 2025-10-13 03:31:05,210 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:31:37] 2025-10-13 03:31:05,210 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:31:37] 2025-10-13 03:31:05,210 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:31:37] 2025-10-13 03:31:05,210 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:31:37] 2025-10-13 03:31:05,210 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:31:37] 2025-10-13 03:31:05,210 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:31:37] 2025-10-13 03:31:05,210 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:31:37] 2025-10-13 03:31:05,210 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:31:37] 2025-10-13 03:31:05,210 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:31:37] 2025-10-13 03:31:05,210 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:31:37] 2025-10-13 03:31:05,210 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:31:37] 2025-10-13 03:31:05,210 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:31:37] 2025-10-13 03:31:05,210 | INFO     | job 6840428481 has completed (purged errors)
[2025-10-13 05:31:37] 2025-10-13 03:31:05,210 | INFO     | overall cleanup function is called
[2025-10-13 05:31:37] 2025-10-13 03:31:06,216 | INFO     | --- collectZombieJob: --- 10, [686585]
[2025-10-13 05:31:37] 2025-10-13 03:31:06,216 | INFO     | zombie collector waiting for pid 686585
[2025-10-13 05:31:37] 2025-10-13 03:31:06,216 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:31:37] 2025-10-13 03:31:06,216 | INFO     | collected zombie processes
[2025-10-13 05:31:37] 2025-10-13 03:31:06,216 | INFO     | will attempt to kill all subprocesses of pid=686585
[2025-10-13 05:31:37] 2025-10-13 03:31:06,248 | INFO     | process IDs to be killed: [686585] (in reverse order)
[2025-10-13 05:31:37] 2025-10-13 03:31:06,265 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:31:37] 2025-10-13 03:31:06,265 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:31:37] 2025-10-13 03:31:06,266 | INFO     | did not find any defunct processes belonging to 686585
[2025-10-13 05:31:37] 2025-10-13 03:31:06,267 | INFO     | did not find any defunct processes belonging to 686585
[2025-10-13 05:31:37] 2025-10-13 03:31:06,267 | INFO     | ready for new job
[2025-10-13 05:31:37] 2025-10-13 03:31:06,267 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:31:37] 2025-10-13 03:31:06,268 | INFO     | ***************************************
[2025-10-13 05:31:37] 2025-10-13 03:31:06,268 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:31:37] 2025-10-13 03:31:06,268 | INFO     | ***************************************
[2025-10-13 05:31:37] 2025-10-13 03:31:06,268 | INFO     | 
[2025-10-13 05:31:37] 2025-10-13 03:31:06,268 | INFO     | architecture information:
[2025-10-13 05:31:37] 2025-10-13 03:31:06,268 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:31:37] 2025-10-13 03:31:06,274 | INFO     | cat /etc/os-release:
[2025-10-13 05:31:37] NAME="CentOS Linux"
[2025-10-13 05:31:37] VERSION="7 (Core)"
[2025-10-13 05:31:37] ID="centos"
[2025-10-13 05:31:37] ID_LIKE="rhel fedora"
[2025-10-13 05:31:37] VERSION_ID="7"
[2025-10-13 05:31:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:31:37] ANSI_COLOR="0;31"
[2025-10-13 05:31:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:31:37] HOME_URL="https://www.centos.org/"
[2025-10-13 05:31:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:31:37] 
[2025-10-13 05:31:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:31:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:31:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:31:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:31:37] 
[2025-10-13 05:31:37] 2025-10-13 03:31:06,274 | INFO     | ***************************************
[2025-10-13 05:31:37] 2025-10-13 03:31:06,777 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-13 05:31:37] 2025-10-13 03:31:06,783 | INFO     | sufficient remaining disk space (871245021184 B)
[2025-10-13 05:31:37] 2025-10-13 03:31:06,783 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:31:37] 2025-10-13 03:31:06,783 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:31:37] 2025-10-13 03:31:06,783 | INFO     | update_server=False
[2025-10-13 05:31:37] 2025-10-13 03:31:06,783 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:31:37] 2025-10-13 03:31:06,784 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:31:37] 2025-10-13 03:31:07,112 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:31:37] 2025-10-13 03:31:07,146 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 05:31:37] 2025-10-13 03:31:07,146 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 05:31:37] 2025-10-13 03:31:07,146 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:31:37] 2025-10-13 03:31:07,146 | INFO     | will abort loop
[2025-10-13 05:31:37] 2025-10-13 03:31:07,282 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:31:37] 2025-10-13 03:31:07,302 | INFO     | all data control threads have been joined
[2025-10-13 05:31:37] 2025-10-13 03:31:07,485 | INFO     | all payload control threads have been joined
[2025-10-13 05:31:37] 2025-10-13 03:31:07,788 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:31:37] 2025-10-13 03:31:07,789 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:31:37] 2025-10-13 03:31:07,849 | INFO     | all job control threads have been joined
[2025-10-13 05:31:37] 2025-10-13 03:31:08,143 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:31:37] 2025-10-13 03:31:08,151 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:31:37] 2025-10-13 03:31:08,307 | INFO     | [data] control thread has finished
[2025-10-13 05:31:37] 2025-10-13 03:31:08,317 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:31:37] 2025-10-13 03:31:08,491 | INFO     | [payload] control thread has finished
[2025-10-13 05:31:37] 2025-10-13 03:31:08,601 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:31:37] 2025-10-13 03:31:08,843 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:31:37] 2025-10-13 03:31:08,854 | INFO     | [job] control thread has finished
[2025-10-13 05:31:37] 2025-10-13 03:31:09,048 | INFO     | [job] validate thread has finished
[2025-10-13 05:31:37] 2025-10-13 03:31:09,117 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:31:37] 2025-10-13 03:31:09,118 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:31:37] 2025-10-13 03:31:09,143 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:31:37] 2025-10-13 03:31:09,229 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:31:37] 2025-10-13 03:31:11,288 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:31:37] 2025-10-13 03:31:32,239 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:31:37] 2025-10-13 03:31:32,597 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140081456850752)>', '<ExcThread(monitor, started 140081054590720)>']
[2025-10-13 05:31:37] 2025-10-13 03:31:37,353 | INFO     | PID=680022 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 05:31:37] 2025-10-13 03:31:37,353 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:31:37] 2025-10-13 03:31:37,353 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:31:37] 2025-10-13 03:31:37,354 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:31:37] 2025-10-13 03:31:37,354 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:31:37] 2025-10-13 03:31:37,354 | INFO     | [monitor] control thread has ended
[2025-10-13 05:31:37] 2025-10-13 03:31:37,622 | INFO     | all workflow threads have been joined
[2025-10-13 05:31:37] 2025-10-13 03:31:37,622 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:31:37] 2025-10-13 03:31:37,622 | INFO     | traces error code: 0
[2025-10-13 05:31:37] 2025-10-13 03:31:37,622 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:31:37] 2025-10-13 03:31:37,665 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:31:37] 2025-10-13 03:31:37,666 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:31:37] 2025-10-13 03:31:37,667 [wrapper] pilotpid: 680022
[2025-10-13 05:31:37] 2025-10-13 03:31:37,668 [wrapper] Pilot exit status: 0
[2025-10-13 05:31:37] 2025-10-13 03:31:37,671 [wrapper] pandaids: 6840428481
[2025-10-13 05:31:37] 2025-10-13 03:31:37,680 [wrapper] cleanup supervisor_pilot  701807 680023
[2025-10-13 05:31:37] 2025-10-13 03:31:37,681 [wrapper] Test setup, not cleaning
[2025-10-13 05:31:37] 2025-10-13 03:31:37,682 [wrapper] apfmon messages muted
[2025-10-13 05:31:37] 2025-10-13 03:31:37,683 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:31:37] 2025-10-13 03:31:37,684 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:31:37]  *** Error codes and diagnostics ***
[2025-10-13 05:31:37]     "exeErrorCode": 0,
[2025-10-13 05:31:37]     "exeErrorDiag": "",
[2025-10-13 05:31:37]     "pilotErrorCode": 0,
[2025-10-13 05:31:37]     "pilotErrorDiag": "",
[2025-10-13 05:31:37]  *** Listing of results directory ***
[2025-10-13 05:31:37] total 412288
[2025-10-13 05:31:37] -rw-r--r-- 1 boinc boinc    557409 Oct 12 18:49 pilot3.tar.gz
[2025-10-13 05:31:37] -rwx------ 1 boinc boinc     36292 Oct 12 18:49 runpilot2-wrapper.sh
[2025-10-13 05:31:37] -rw-r--r-- 1 boinc boinc      5112 Oct 12 18:49 queuedata.json
[2025-10-13 05:31:37] -rw-r--r-- 1 boinc boinc       100 Oct 13 04:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:31:37] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 04:41 run_atlas
[2025-10-13 05:31:37] -rw-r--r-- 1 boinc boinc       105 Oct 13 04:41 job.xml
[2025-10-13 05:31:37] -rw-r--r-- 2 boinc boinc     15120 Oct 13 04:41 start_atlas.sh
[2025-10-13 05:31:37] drwxrwx--x 2 boinc boinc        68 Oct 13 04:41 shared
[2025-10-13 05:31:37] -rw-r--r-- 2 boinc boinc    569682 Oct 13 04:41 input.tar.gz
[2025-10-13 05:31:37] -rw-r--r-- 1 boinc boinc      6549 Oct 13 04:41 init_data.xml
[2025-10-13 05:31:37] -rw-r--r-- 2 boinc boinc 221201213 Oct 13 04:41 EVNT.46676267._001724.pool.root.1
[2025-10-13 05:31:37] -rw-r--r-- 1 boinc boinc         0 Oct 13 04:41 boinc_lockfile
[2025-10-13 05:31:37] -rw-r--r-- 1 boinc boinc      2549 Oct 13 04:41 pandaJob.out
[2025-10-13 05:31:37] -rw------- 1 boinc boinc    974373 Oct 13 04:41 agis_schedconf.cvmfs.json
[2025-10-13 05:31:37] -rw------- 1 boinc boinc   1560580 Oct 13 04:41 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:31:37] drwx------ 5 boinc boinc      4096 Oct 13 04:41 pilot3
[2025-10-13 05:31:37] -rw------- 1 boinc boinc 195618647 Oct 13 05:30 HITS.46676269._084083.pool.root.1
[2025-10-13 05:31:37] -rw------- 1 boinc boinc        95 Oct 13 05:30 pilot_heartbeat.json
[2025-10-13 05:31:37] -rw-r--r-- 1 boinc boinc       529 Oct 13 05:30 boinc_task_state.xml
[2025-10-13 05:31:37] -rw------- 1 boinc boinc      1015 Oct 13 05:30 memory_monitor_summary.json
[2025-10-13 05:31:37] -rw------- 1 boinc boinc    278578 Oct 13 05:30 log.46676269._084083.job.log.tgz.1
[2025-10-13 05:31:37] -rw------- 1 boinc boinc      7787 Oct 13 05:31 heartbeat.json
[2025-10-13 05:31:37] -rw-r--r-- 1 boinc boinc      8192 Oct 13 05:31 boinc_mmap_file
[2025-10-13 05:31:37] -rw-r--r-- 1 boinc boinc        27 Oct 13 05:31 wrapper_checkpoint.txt
[2025-10-13 05:31:37] -rw------- 1 boinc boinc      4934 Oct 13 05:31 pilotlog.txt
[2025-10-13 05:31:37] -rw------- 1 boinc boinc    456822 Oct 13 05:31 log.46676269._084083.job.log.1
[2025-10-13 05:31:37] -rw------- 1 boinc boinc       357 Oct 13 05:31 output.list
[2025-10-13 05:31:37] -rw-r--r-- 1 boinc boinc       620 Oct 13 05:31 runtime_log
[2025-10-13 05:31:37] -rw------- 1 boinc boinc    757760 Oct 13 05:31 result.tar.gz
[2025-10-13 05:31:37] -rw-r--r-- 1 boinc boinc      8716 Oct 13 05:31 runtime_log.err
[2025-10-13 05:31:37] -rw------- 1 boinc boinc       654 Oct 13 05:31 kMhKDmJRES8n9Rq4apOajLDm4fhM0noT9bVof3QYDmVTUMDmWmcKom.diag
[2025-10-13 05:31:37] -rw-r--r-- 1 boinc boinc     21968 Oct 13 05:31 stderr.txt
[2025-10-13 05:31:37] HITS file was successfully produced:
[2025-10-13 05:31:37] -rw------- 1 boinc boinc 195618647 Oct 13 05:30 shared/HITS.pool.root.1
[2025-10-13 05:31:37]  *** Contents of shared directory: ***
[2025-10-13 05:31:37] total 408372
[2025-10-13 05:31:37] -rw-r--r-- 2 boinc boinc     15120 Oct 13 04:41 start_atlas.sh
[2025-10-13 05:31:37] -rw-r--r-- 2 boinc boinc    569682 Oct 13 04:41 input.tar.gz
[2025-10-13 05:31:37] -rw-r--r-- 2 boinc boinc 221201213 Oct 13 04:41 ATLAS.root_0
[2025-10-13 05:31:37] -rw------- 1 boinc boinc 195618647 Oct 13 05:30 HITS.pool.root.1
[2025-10-13 05:31:37] -rw------- 1 boinc boinc    757760 Oct 13 05:31 result.tar.gz
05:31:39 (676342): run_atlas exited; CPU time 16664.837376
05:31:39 (676342): called boinc_finish(0)

</stderr_txt>
]]>

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