Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:44:41 (3852045): wrapper (7.7.26015): starting
07:44:41 (3852045): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 07:44:41] Arguments: --nthreads 4
[2025-10-13 07:44:41] Threads: 4
[2025-10-13 07:44:41] Checking for CVMFS
[2025-10-13 07:44:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 07:44:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 07:44:41] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 07:44:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 07:44:41] 2.9.2.0 1950177 5422 94340 151650 0 57 30319214 36864000 0 130560 0 4975270 99.992 184265 754 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 07:44:41] CVMFS is ok
[2025-10-13 07:44:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 07:44:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 07:44:41] Further information can be found at the LHC@home message board.
[2025-10-13 07:44:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 07:44:41] Checking for apptainer binary...
[2025-10-13 07:44:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 07:44:41] Running /usr/bin/apptainer --version
[2025-10-13 07:44:41] apptainer version 1.4.1-1.1
[2025-10-13 07:44:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 07:44:41] thA314a
[2025-10-13 07:44:41] apptainer works
[2025-10-13 07:44:41] Set ATHENA_PROC_NUMBER=4
[2025-10-13 07:44:41] Set ATHENA_CORE_NUMBER=4
[2025-10-13 07:44:41] Starting ATLAS job with PandaID=6840392349
[2025-10-13 07:44:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 08:57:01]  *** The last 200 lines of the pilot log: ***
[2025-10-13 08:57:01] 2025-10-13 06:56:31,022 | INFO     | will attempt to kill all subprocesses of pid=3862386
[2025-10-13 08:57:01] 2025-10-13 06:56:31,067 | INFO     | process IDs to be killed: [3862386] (in reverse order)
[2025-10-13 08:57:01] 2025-10-13 06:56:31,097 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 08:57:01] 2025-10-13 06:56:31,097 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 08:57:01] 2025-10-13 06:56:31,099 | INFO     | did not find any defunct processes belonging to 3862386
[2025-10-13 08:57:01] 2025-10-13 06:56:31,100 | INFO     | did not find any defunct processes belonging to 3862386
[2025-10-13 08:57:01] 2025-10-13 06:56:31,100 | INFO     | ready for new job
[2025-10-13 08:57:01] 2025-10-13 06:56:31,100 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 08:57:01] 2025-10-13 06:56:31,101 | INFO     | ***************************************
[2025-10-13 08:57:01] 2025-10-13 06:56:31,101 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 08:57:01] 2025-10-13 06:56:31,101 | INFO     | ***************************************
[2025-10-13 08:57:01] 2025-10-13 06:56:31,101 | INFO     | 
[2025-10-13 08:57:01] 2025-10-13 06:56:31,102 | INFO     | architecture information:
[2025-10-13 08:57:01] 2025-10-13 06:56:31,102 | INFO     | executing command: cat /etc/os-release
[2025-10-13 08:57:01] 2025-10-13 06:56:31,114 | INFO     | cat /etc/os-release:
[2025-10-13 08:57:01] NAME="CentOS Linux"
[2025-10-13 08:57:01] VERSION="7 (Core)"
[2025-10-13 08:57:01] ID="centos"
[2025-10-13 08:57:01] ID_LIKE="rhel fedora"
[2025-10-13 08:57:01] VERSION_ID="7"
[2025-10-13 08:57:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 08:57:01] ANSI_COLOR="0;31"
[2025-10-13 08:57:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 08:57:01] HOME_URL="https://www.centos.org/"
[2025-10-13 08:57:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 08:57:01] 
[2025-10-13 08:57:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 08:57:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 08:57:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 08:57:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 08:57:01] 
[2025-10-13 08:57:01] 2025-10-13 06:56:31,115 | INFO     | ***************************************
[2025-10-13 08:57:01] 2025-10-13 06:56:31,618 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 08:57:01] 2025-10-13 06:56:31,635 | INFO     | sufficient remaining disk space (228947132416 B)
[2025-10-13 08:57:01] 2025-10-13 06:56:31,636 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 08:57:01] 2025-10-13 06:56:31,636 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 08:57:01] 2025-10-13 06:56:31,636 | INFO     | update_server=False
[2025-10-13 08:57:01] 2025-10-13 06:56:31,636 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 08:57:01] 2025-10-13 06:56:31,636 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:57:01] 2025-10-13 06:56:31,636 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 08:57:01] 2025-10-13 06:56:31,950 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 08:57:01] 2025-10-13 06:56:31,951 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 08:57:01] 2025-10-13 06:56:31,951 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:57:01] 2025-10-13 06:56:31,951 | INFO     | will abort loop
[2025-10-13 08:57:01] 2025-10-13 06:56:32,306 | INFO     | all data control threads have been joined
[2025-10-13 08:57:01] 2025-10-13 06:56:32,641 | INFO     | [job] queue monitor thread has finished
[2025-10-13 08:57:01] 2025-10-13 06:56:32,642 | INFO     | [job] retrieve thread has finished
[2025-10-13 08:57:01] 2025-10-13 06:56:32,674 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 08:57:01] 2025-10-13 06:56:32,725 | INFO     | all job control threads have been joined
[2025-10-13 08:57:01] 2025-10-13 06:56:32,754 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 08:57:01] 2025-10-13 06:56:32,775 | INFO     | [payload] failed_post thread has finished
[2025-10-13 08:57:01] 2025-10-13 06:56:32,932 | INFO     | [data] copytool_in thread has finished
[2025-10-13 08:57:01] 2025-10-13 06:56:32,956 | INFO     | [job] job monitor thread has finished
[2025-10-13 08:57:01] 2025-10-13 06:56:33,024 | INFO     | all payload control threads have been joined
[2025-10-13 08:57:01] 2025-10-13 06:56:33,312 | INFO     | [data] control thread has finished
[2025-10-13 08:57:01] 2025-10-13 06:56:33,427 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 08:57:01] 2025-10-13 06:56:33,510 | INFO     | [payload] validate_post thread has finished
[2025-10-13 08:57:01] 2025-10-13 06:56:33,642 | INFO     | [data] copytool_out thread has finished
[2025-10-13 08:57:01] 2025-10-13 06:56:33,731 | INFO     | [job] control thread has finished
[2025-10-13 08:57:01] 2025-10-13 06:56:34,002 | INFO     | [job] validate thread has finished
[2025-10-13 08:57:01] 2025-10-13 06:56:34,030 | INFO     | [payload] control thread has finished
[2025-10-13 08:57:01] 2025-10-13 06:56:34,046 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 08:57:01] 2025-10-13 06:56:37,434 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 08:57:01] 2025-10-13 06:56:42,183 | INFO     | job.realtimelogging is not enabled
[2025-10-13 08:57:01] 2025-10-13 06:56:43,189 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 08:57:01] 2025-10-13 06:56:53,919 | INFO     | [monitor] cgroup control has ended
[2025-10-13 08:57:01] 2025-10-13 06:56:55,614 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139903680186176)>', '<ExcThread(monitor, started 139902452758272)>']
[2025-10-13 08:57:01] 2025-10-13 06:57:00,639 | INFO     | all workflow threads have been joined
[2025-10-13 08:57:01] 2025-10-13 06:57:00,640 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 08:57:01] 2025-10-13 06:57:00,640 | INFO     | traces error code: 0
[2025-10-13 08:57:01] 2025-10-13 06:57:00,640 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 08:57:01] 2025-10-13 06:57:01,454 | INFO     | PID=3855825 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 08:57:01] 2025-10-13 06:57:01,454 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 08:57:01] 2025-10-13 06:57:01,454 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 08:57:01] 2025-10-13 06:57:01,454 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 08:57:01] 2025-10-13 06:57:01,454 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 08:57:01] 2025-10-13 06:57:01,454 | INFO     | [monitor] control thread has ended
[2025-10-13 08:57:01] 2025-10-13 06:57:01,519 [wrapper] ==== pilot stdout END ====
[2025-10-13 08:57:01] 2025-10-13 06:57:01,523 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 08:57:01] 2025-10-13 06:57:01,527 [wrapper] pilotpid: 3855825
[2025-10-13 08:57:01] 2025-10-13 06:57:01,531 [wrapper] Pilot exit status: 0
[2025-10-13 08:57:01] 2025-10-13 06:57:01,541 [wrapper] pandaids: 6840392349
[2025-10-13 08:57:01] 2025-10-13 06:57:01,561 [wrapper] cleanup supervisor_pilot 3872089 3855826
[2025-10-13 08:57:01] 2025-10-13 06:57:01,565 [wrapper] Test setup, not cleaning
[2025-10-13 08:57:01] 2025-10-13 06:57:01,569 [wrapper] apfmon messages muted
[2025-10-13 08:57:01] 2025-10-13 06:57:01,572 [wrapper] ==== wrapper stdout END ====
[2025-10-13 08:57:01] 2025-10-13 06:57:01,576 [wrapper] ==== wrapper stderr END ====
[2025-10-13 08:57:01]  *** Error codes and diagnostics ***
[2025-10-13 08:57:01]     "exeErrorCode": 0,
[2025-10-13 08:57:01]     "exeErrorDiag": "",
[2025-10-13 08:57:01]     "pilotErrorCode": 0,
[2025-10-13 08:57:01]     "pilotErrorDiag": "",
[2025-10-13 08:57:01]  *** Listing of results directory ***
[2025-10-13 08:57:01] total 414720
[2025-10-13 08:57:01] -rw-r--r-- 1 boinc boinc    557409 Oct 12 18:01 pilot3.tar.gz
[2025-10-13 08:57:01] -rwx------ 1 boinc boinc     36292 Oct 12 18:39 runpilot2-wrapper.sh
[2025-10-13 08:57:01] -rw-r--r-- 1 boinc boinc      5112 Oct 12 18:39 queuedata.json
[2025-10-13 08:57:01] -rw-r--r-- 1 boinc boinc       100 Oct 13 07:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 08:57:01] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 07:44 run_atlas
[2025-10-13 08:57:01] -rw-r--r-- 1 boinc boinc       105 Oct 13 07:44 job.xml
[2025-10-13 08:57:01] -rw-r--r-- 2 boinc boinc 222495251 Oct 13 07:44 EVNT.46676267._004754.pool.root.1
[2025-10-13 08:57:01] -rw-r--r-- 2 boinc boinc    569675 Oct 13 07:44 input.tar.gz
[2025-10-13 08:57:01] -rw-r--r-- 2 boinc boinc     15120 Oct 13 07:44 start_atlas.sh
[2025-10-13 08:57:01] drwxrwx--x 2 boinc boinc      4096 Oct 13 07:44 shared
[2025-10-13 08:57:01] -rw-r--r-- 1 boinc boinc         0 Oct 13 07:44 boinc_setup_complete
[2025-10-13 08:57:01] -rw-r--r-- 1 boinc boinc      6371 Oct 13 07:44 init_data.xml
[2025-10-13 08:57:01] -rw-r--r-- 1 boinc boinc         0 Oct 13 07:44 boinc_lockfile
[2025-10-13 08:57:01] -rw-r--r-- 1 boinc boinc      2550 Oct 13 07:44 pandaJob.out
[2025-10-13 08:57:01] -rw------- 1 boinc boinc    973230 Oct 13 07:44 agis_schedconf.cvmfs.json
[2025-10-13 08:57:01] -rw------- 1 boinc boinc   1560580 Oct 13 07:44 agis_ddmendpoints.agis.ALL.json
[2025-10-13 08:57:01] drwx------ 5 boinc boinc      4096 Oct 13 07:44 pilot3
[2025-10-13 08:57:01] -rw------- 1 boinc boinc 196461586 Oct 13 08:56 HITS.46676269._083810.pool.root.1
[2025-10-13 08:57:01] -rw-r--r-- 1 boinc boinc       529 Oct 13 08:56 boinc_task_state.xml
[2025-10-13 08:57:01] -rw------- 1 boinc boinc        95 Oct 13 08:56 pilot_heartbeat.json
[2025-10-13 08:57:01] -rw------- 1 boinc boinc      1022 Oct 13 08:56 memory_monitor_summary.json
[2025-10-13 08:57:01] -rw------- 1 boinc boinc    274358 Oct 13 08:56 log.46676269._083810.job.log.tgz.1
[2025-10-13 08:57:01] -rw------- 1 boinc boinc      7768 Oct 13 08:56 heartbeat.json
[2025-10-13 08:57:01] -rw-r--r-- 1 boinc boinc      8192 Oct 13 08:56 boinc_mmap_file
[2025-10-13 08:57:01] -rw-r--r-- 1 boinc boinc        27 Oct 13 08:56 wrapper_checkpoint.txt
[2025-10-13 08:57:01] -rw------- 1 boinc boinc       747 Oct 13 08:57 pilotlog.txt
[2025-10-13 08:57:01] -rw------- 1 boinc boinc    639043 Oct 13 08:57 log.46676269._083810.job.log.1
[2025-10-13 08:57:01] -rw------- 1 boinc boinc       357 Oct 13 08:57 output.list
[2025-10-13 08:57:01] -rw-r--r-- 1 boinc boinc       620 Oct 13 08:57 runtime_log
[2025-10-13 08:57:01] -rw------- 1 boinc boinc    931840 Oct 13 08:57 result.tar.gz
[2025-10-13 08:57:01] -rw-r--r-- 1 boinc boinc      8782 Oct 13 08:57 runtime_log.err
[2025-10-13 08:57:01] -rw------- 1 boinc boinc       659 Oct 13 08:57 jOmNDmLHES8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmPhkNDmOmIL9m.diag
[2025-10-13 08:57:01] -rw-r--r-- 1 boinc boinc     10520 Oct 13 08:57 stderr.txt
[2025-10-13 08:57:01] HITS file was successfully produced:
[2025-10-13 08:57:01] -rw------- 1 boinc boinc 196461586 Oct 13 08:56 shared/HITS.pool.root.1
[2025-10-13 08:57:01]  *** Contents of shared directory: ***
[2025-10-13 08:57:01] total 410640
[2025-10-13 08:57:01] -rw-r--r-- 2 boinc boinc 222495251 Oct 13 07:44 ATLAS.root_0
[2025-10-13 08:57:01] -rw-r--r-- 2 boinc boinc    569675 Oct 13 07:44 input.tar.gz
[2025-10-13 08:57:01] -rw-r--r-- 2 boinc boinc     15120 Oct 13 07:44 start_atlas.sh
[2025-10-13 08:57:01] -rw------- 1 boinc boinc 196461586 Oct 13 08:56 HITS.pool.root.1
[2025-10-13 08:57:01] -rw------- 1 boinc boinc    931840 Oct 13 08:57 result.tar.gz
08:57:03 (3852045): run_atlas exited; CPU time 16116.181674
08:57:03 (3852045): called boinc_finish(0)

</stderr_txt>
]]>

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