Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:01:25 (235773): wrapper (7.7.26015): starting
16:01:25 (235773): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 16:01:25] Arguments: --nthreads 9
[2025-10-12 16:01:25] Threads: 9
[2025-10-12 16:01:25] Checking for CVMFS
[2025-10-12 16:01:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:01:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:01:25] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:01:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:01:27] 2.13.2.0 5948 6133 111016 151635 1 246 39004725 40960000 20897 16776704 0 15981831 99.942 2282176 29932 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 16:01:27] CVMFS is ok
[2025-10-12 16:01:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 16:01:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 16:01:27] Further information can be found at the LHC@home message board.
[2025-10-12 16:01:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:01:27] Checking for apptainer binary...
[2025-10-12 16:01:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 16:01:27] Running /usr/bin/apptainer --version
[2025-10-12 16:01:27] apptainer version 1.4.3-1.el9
[2025-10-12 16:01:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:01:27] c-211-35-2.aglt2.org
[2025-10-12 16:01:27] apptainer works
[2025-10-12 16:01:27] Set ATHENA_PROC_NUMBER=9
[2025-10-12 16:01:27] Set ATHENA_CORE_NUMBER=9
[2025-10-12 16:01:27] Starting ATLAS job with PandaID=6840428498
[2025-10-12 16:01:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 18:20:03]  *** The last 200 lines of the pilot log: ***
[2025-10-12 18:20:03] 2025-10-12 22:18:53,358 | INFO     | current chi2=1.646147837719251 (change=-0.009753122283192096 %)
[2025-10-12 18:20:03] 2025-10-12 22:18:53,358 | INFO     | right removable region: 126
[2025-10-12 18:20:03] 2025-10-12 22:18:53,358 | INFO     | sum of square deviations: 635106514.0472449
[2025-10-12 18:20:03] 2025-10-12 22:18:53,359 | INFO     | sum of deviations: 5490594323.606298
[2025-10-12 18:20:03] 2025-10-12 22:18:53,359 | INFO     | mean x: 1760303616.0866141
[2025-10-12 18:20:03] 2025-10-12 22:18:53,359 | INFO     | mean y: 2560977.94488189
[2025-10-12 18:20:03] 2025-10-12 22:18:53,359 | INFO     | -- intersect: -15215536819.096178
[2025-10-12 18:20:03] 2025-10-12 22:18:53,359 | INFO     | intersect: -15215536819.096178
[2025-10-12 18:20:03] 2025-10-12 22:18:53,360 | INFO     | chi2: 0.025133568631552947
[2025-10-12 18:20:03] 2025-10-12 22:18:53,360 | INFO     | current chi2=0.025133568631552947 (change=98.47303994433076 %)
[2025-10-12 18:20:03] 2025-10-12 22:18:53,360 | INFO     | sum of square deviations: 562999481.5081968
[2025-10-12 18:20:03] 2025-10-12 22:18:53,361 | INFO     | sum of deviations: 2294329172.967212
[2025-10-12 18:20:03] 2025-10-12 22:18:53,361 | INFO     | mean x: 1760303768.590164
[2025-10-12 18:20:03] 2025-10-12 22:18:53,361 | INFO     | mean y: 2567687.1393442624
[2025-10-12 18:20:03] 2025-10-12 22:18:53,361 | INFO     | -- intersect: -7171002488.700574
[2025-10-12 18:20:03] 2025-10-12 22:18:53,361 | INFO     | intersect: -7171002488.700574
[2025-10-12 18:20:03] 2025-10-12 22:18:53,361 | INFO     | chi2: 0.004246682181593229
[2025-10-12 18:20:03] 2025-10-12 22:18:53,362 | INFO     | current chi2=0.004246682181593229 (change=83.10354472996764 %)
[2025-10-12 18:20:03] 2025-10-12 22:18:53,362 | INFO     | sum of square deviations: 496596858.5811954
[2025-10-12 18:20:03] 2025-10-12 22:18:53,362 | INFO     | sum of deviations: 1810128274.4444444
[2025-10-12 18:20:03] 2025-10-12 22:18:53,363 | INFO     | mean x: 1760303921.059829
[2025-10-12 18:20:03] 2025-10-12 22:18:53,363 | INFO     | mean y: 2568836.222222222
[2025-10-12 18:20:03] 2025-10-12 22:18:53,363 | INFO     | -- intersect: -6413854957.173227
[2025-10-12 18:20:03] 2025-10-12 22:18:53,363 | INFO     | intersect: -6413854957.173227
[2025-10-12 18:20:03] 2025-10-12 22:18:53,363 | INFO     | chi2: 0.0007264658053035234
[2025-10-12 18:20:03] 2025-10-12 22:18:53,363 | INFO     | current chi2=0.0007264658053035234 (change=82.89333238893391 %)
[2025-10-12 18:20:03] 2025-10-12 22:18:53,363 | INFO     | sum of square deviations: 435607533.5625
[2025-10-12 18:20:03] 2025-10-12 22:18:53,364 | INFO     | sum of deviations: 1223003261.7500002
[2025-10-12 18:20:03] 2025-10-12 22:18:53,364 | INFO     | mean x: 1760304073.5625
[2025-10-12 18:20:03] 2025-10-12 22:18:53,364 | INFO     | mean y: 2570302.035714286
[2025-10-12 18:20:03] 2025-10-12 22:18:53,364 | INFO     | -- intersect: -4939625270.27723
[2025-10-12 18:20:03] 2025-10-12 22:18:53,365 | INFO     | intersect: -4939625270.27723
[2025-10-12 18:20:03] 2025-10-12 22:18:53,365 | INFO     | chi2: 0.00034001827302846587
[2025-10-12 18:20:03] 2025-10-12 22:18:53,365 | INFO     | current chi2=0.00034001827302846587 (change=53.19555710039189 %)
[2025-10-12 18:20:03] 2025-10-12 22:18:53,365 | INFO     | sum of square deviations: 379827608.5420554
[2025-10-12 18:20:03] 2025-10-12 22:18:53,366 | INFO     | sum of deviations: 951144379.6168225
[2025-10-12 18:20:03] 2025-10-12 22:18:53,366 | INFO     | mean x: 1760304226.0654206
[2025-10-12 18:20:03] 2025-10-12 22:18:53,366 | INFO     | mean y: 2571042.6261682245
[2025-10-12 18:20:03] 2025-10-12 22:18:53,366 | INFO     | -- intersect: -4405490492.091054
[2025-10-12 18:20:03] 2025-10-12 22:18:53,366 | INFO     | intersect: -4405490492.091054
[2025-10-12 18:20:03] 2025-10-12 22:18:53,366 | INFO     | chi2: 0.0002926298893796908
[2025-10-12 18:20:03] 2025-10-12 22:18:53,366 | INFO     | current chi2=0.0002926298893796908 (change=13.937010863180218 %)
[2025-10-12 18:20:03] 2025-10-12 22:18:53,366 | INFO     | left removable region: 50
[2025-10-12 18:20:03] 2025-10-12 22:18:53,367 | INFO     | sum of square deviations: 136093688.6710525
[2025-10-12 18:20:03] 2025-10-12 22:18:53,367 | INFO     | sum of deviations: 402299783.52631575
[2025-10-12 18:20:03] 2025-10-12 22:18:53,367 | INFO     | mean x: 1760304805.5657895
[2025-10-12 18:20:03] 2025-10-12 22:18:53,367 | INFO     | mean y: 2572842.8947368423
[2025-10-12 18:20:03] 2025-10-12 22:18:53,367 | INFO     | -- intersect: -5200976631.990502
[2025-10-12 18:20:03] 2025-10-12 22:18:53,367 | INFO     | intersect: -5200976631.990502
[2025-10-12 18:20:03] 2025-10-12 22:18:53,367 | INFO     | chi2: 0.00021840869044289823
[2025-10-12 18:20:03] 2025-10-12 22:18:53,368 | INFO     | -- intersect: -5200976631.990502
[2025-10-12 18:20:03] 2025-10-12 22:18:53,368 | INFO     | current memory leak: 2.96 B/s (using 76 data points, chi2=0.00)
[2025-10-12 18:20:03] 2025-10-12 22:18:53,368 | INFO     | could have reported an average CPU frequency of 2523 MHz (8 samples)
[2025-10-12 18:20:03] 2025-10-12 22:18:53,369 | INFO     | ..............................
[2025-10-12 18:20:03] 2025-10-12 22:18:53,369 | INFO     | . Timing measurements:
[2025-10-12 18:20:03] 2025-10-12 22:18:53,369 | INFO     | . get job = 0 s
[2025-10-12 18:20:03] 2025-10-12 22:18:53,369 | INFO     | . initial setup = 3 s
[2025-10-12 18:20:03] 2025-10-12 22:18:53,369 | INFO     | . payload setup = 38 s
[2025-10-12 18:20:03] 2025-10-12 22:18:53,369 | INFO     | . stage-in = 0 s
[2025-10-12 18:20:03] 2025-10-12 22:18:53,369 | INFO     | . payload execution = 8069 s
[2025-10-12 18:20:03] 2025-10-12 22:18:53,369 | INFO     | . stage-out = 1 s
[2025-10-12 18:20:03] 2025-10-12 22:18:53,369 | INFO     | . log creation = 0 s
[2025-10-12 18:20:03] 2025-10-12 22:18:53,369 | INFO     | ..............................
[2025-10-12 18:20:03] 2025-10-12 22:18:53,479 | INFO     | 
[2025-10-12 18:20:03] 2025-10-12 22:18:53,480 | INFO     | job summary report
[2025-10-12 18:20:03] 2025-10-12 22:18:53,480 | INFO     | --------------------------------------------------
[2025-10-12 18:20:03] 2025-10-12 22:18:53,480 | INFO     | PanDA job id: 6840428498
[2025-10-12 18:20:03] 2025-10-12 22:18:53,480 | INFO     | task id: 46676269
[2025-10-12 18:20:03] 2025-10-12 22:18:53,480 | INFO     | errors: (none)
[2025-10-12 18:20:03] 2025-10-12 22:18:53,480 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 18:20:03] 2025-10-12 22:18:53,480 | INFO     | pilot state: finished 
[2025-10-12 18:20:03] 2025-10-12 22:18:53,480 | INFO     | transexitcode: 0
[2025-10-12 18:20:03] 2025-10-12 22:18:53,480 | INFO     | exeerrorcode: 0
[2025-10-12 18:20:03] 2025-10-12 22:18:53,480 | INFO     | exeerrordiag: 
[2025-10-12 18:20:03] 2025-10-12 22:18:53,480 | INFO     | exitcode: 0
[2025-10-12 18:20:03] 2025-10-12 22:18:53,481 | INFO     | exitmsg: OK
[2025-10-12 18:20:03] 2025-10-12 22:18:53,481 | INFO     | cpuconsumptiontime: 46053 s
[2025-10-12 18:20:03] 2025-10-12 22:18:53,481 | INFO     | nevents: 400
[2025-10-12 18:20:03] 2025-10-12 22:18:53,481 | INFO     | neventsw: 0
[2025-10-12 18:20:03] 2025-10-12 22:18:53,481 | INFO     | pid: 248974
[2025-10-12 18:20:03] 2025-10-12 22:18:53,481 | INFO     | pgrp: 248974
[2025-10-12 18:20:03] 2025-10-12 22:18:53,481 | INFO     | corecount: 9
[2025-10-12 18:20:03] 2025-10-12 22:18:53,481 | INFO     | event service: False
[2025-10-12 18:20:03] 2025-10-12 22:18:53,481 | INFO     | sizes: {0: 2348583, 1: 2348782, 2: 2348782, 12: 2348810, 23: 2348838, 29: 2349128, 35: 2349284, 8111: 2377240, 8114: 2386238, 8115: 2386294, 8130: 2386488}
[2025-10-12 18:20:03] 2025-10-12 22:18:53,481 | INFO     | --------------------------------------------------
[2025-10-12 18:20:03] 2025-10-12 22:18:53,481 | INFO     | 
[2025-10-12 18:20:03] 2025-10-12 22:18:53,482 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-12 18:20:03] 2025-10-12 22:18:53,548 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 18:20:03] 2025-10-12 22:18:53,548 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 18:20:03] 2025-10-12 22:18:53,548 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 18:20:03] 2025-10-12 22:18:53,548 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 18:20:03] 2025-10-12 22:18:53,548 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 18:20:03] 2025-10-12 22:18:53,548 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 18:20:03] 2025-10-12 22:18:53,549 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 18:20:03] 2025-10-12 22:18:53,549 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 18:20:03] 2025-10-12 22:18:53,549 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 18:20:03] 2025-10-12 22:18:53,549 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 18:20:03] 2025-10-12 22:18:53,549 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 18:20:03] 2025-10-12 22:18:53,549 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 18:20:03] 2025-10-12 22:18:53,549 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 18:20:03] 2025-10-12 22:18:53,549 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 18:20:03] 2025-10-12 22:18:53,549 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 18:20:03] 2025-10-12 22:18:53,549 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 18:20:03] 2025-10-12 22:18:53,549 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 18:20:03] 2025-10-12 22:18:53,550 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 18:20:03] 2025-10-12 22:18:53,550 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 18:20:03] 2025-10-12 22:18:53,550 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 18:20:03] 2025-10-12 22:18:53,550 | INFO     | job 6840428498 has completed (purged errors)
[2025-10-12 18:20:03] 2025-10-12 22:18:53,550 | INFO     | overall cleanup function is called
[2025-10-12 18:20:03] 2025-10-12 22:18:54,560 | INFO     | --- collectZombieJob: --- 10, [248974]
[2025-10-12 18:20:03] 2025-10-12 22:18:54,560 | INFO     | zombie collector waiting for pid 248974
[2025-10-12 18:20:03] 2025-10-12 22:18:54,560 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 18:20:03] 2025-10-12 22:18:54,560 | INFO     | collected zombie processes
[2025-10-12 18:20:03] 2025-10-12 22:18:54,561 | INFO     | will attempt to kill all subprocesses of pid=248974
[2025-10-12 18:20:03] 2025-10-12 22:18:55,008 | INFO     | process IDs to be killed: [248974] (in reverse order)
[2025-10-12 18:20:03] 2025-10-12 22:18:55,159 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 18:20:03] 2025-10-12 22:18:55,159 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 18:20:03] 2025-10-12 22:18:55,183 | INFO     | did not find any defunct processes belonging to 248974
[2025-10-12 18:20:03] 2025-10-12 22:18:55,219 | INFO     | did not find any defunct processes belonging to 248974
[2025-10-12 18:20:03] 2025-10-12 22:18:55,220 | INFO     | ready for new job
[2025-10-12 18:20:03] 2025-10-12 22:18:55,220 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 18:20:03] 2025-10-12 22:18:55,222 | INFO     | ***************************************
[2025-10-12 18:20:03] 2025-10-12 22:18:55,223 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 18:20:03] 2025-10-12 22:18:55,223 | INFO     | ***************************************
[2025-10-12 18:20:03] 2025-10-12 22:18:55,223 | INFO     | 
[2025-10-12 18:20:03] 2025-10-12 22:18:55,229 | INFO     | architecture information:
[2025-10-12 18:20:03] 2025-10-12 22:18:55,229 | INFO     | executing command: cat /etc/os-release
[2025-10-12 18:20:03] 2025-10-12 22:18:55,255 | INFO     | cat /etc/os-release:
[2025-10-12 18:20:03] NAME="CentOS Linux"
[2025-10-12 18:20:03] VERSION="7 (Core)"
[2025-10-12 18:20:03] ID="centos"
[2025-10-12 18:20:03] ID_LIKE="rhel fedora"
[2025-10-12 18:20:03] VERSION_ID="7"
[2025-10-12 18:20:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 18:20:03] ANSI_COLOR="0;31"
[2025-10-12 18:20:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 18:20:03] HOME_URL="https://www.centos.org/"
[2025-10-12 18:20:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 18:20:03] 
[2025-10-12 18:20:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 18:20:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 18:20:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 18:20:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 18:20:03] 
[2025-10-12 18:20:03] 2025-10-12 22:18:55,256 | INFO     | ***************************************
[2025-10-12 18:20:03] 2025-10-12 22:18:55,768 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-12 18:20:03] 2025-10-12 22:18:55,862 | INFO     | sufficient remaining disk space (127887474688 B)
[2025-10-12 18:20:03] 2025-10-12 22:18:55,863 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 18:20:03] 2025-10-12 22:18:55,863 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 18:20:03] 2025-10-12 22:18:55,863 | INFO     | update_server=False
[2025-10-12 18:20:03] 2025-10-12 22:18:55,863 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 18:20:03] 2025-10-12 22:18:55,864 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 18:20:03] 2025-10-12 22:18:55,995 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 18:20:03] 2025-10-12 22:18:55,995 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 18:20:03] 2025-10-12 22:18:55,995 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:20:03] 2025-10-12 22:18:55,995 | INFO     | will abort loop
[2025-10-12 18:20:03] 2025-10-12 22:18:56,408 | INFO     | all payload control threads have been joined
[2025-10-12 18:20:03] 2025-10-12 22:18:56,672 | INFO     | all job control threads have been joined
[2025-10-12 18:20:03] 2025-10-12 22:18:56,857 | INFO     | all data control threads have been joined
[2025-10-12 18:20:03] 2025-10-12 22:18:56,869 | INFO     | [job] retrieve thread has finished
[2025-10-12 18:20:03] 2025-10-12 22:18:57,003 | INFO     | [job] job monitor thread has finished
[2025-10-12 18:20:03] 2025-10-12 22:18:57,295 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 18:20:03] 2025-10-12 22:18:57,414 | INFO     | [payload] control thread has finished
[2025-10-12 18:20:03] 2025-10-12 22:18:57,463 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 18:20:03] 2025-10-12 22:18:57,464 | INFO     | [job] validate thread has finished
[2025-10-12 18:20:03] 2025-10-12 22:18:57,510 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 18:20:03] 2025-10-12 22:18:57,677 | INFO     | [job] control thread has finished
[2025-10-12 18:20:03] 2025-10-12 22:18:57,711 | INFO     | [payload] failed_post thread has finished
[2025-10-12 18:20:03] 2025-10-12 22:18:57,798 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 18:20:03] 2025-10-12 22:18:57,863 | INFO     | [data] control thread has finished
[2025-10-12 18:20:03] 2025-10-12 22:18:57,884 | INFO     | [data] copytool_out thread has finished
[2025-10-12 18:20:03] 2025-10-12 22:18:57,909 | INFO     | [payload] validate_post thread has finished
[2025-10-12 18:20:03] 2025-10-12 22:18:57,930 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 18:20:03] 2025-10-12 22:18:58,380 | INFO     | [data] copytool_in thread has finished
[2025-10-12 18:20:03] 2025-10-12 22:18:58,494 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:20:03] 2025-10-12 22:18:59,500 | INFO     | [job] queue monitor thread has finished
[2025-10-12 18:20:03] 2025-10-12 22:19:01,519 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 18:20:03] 2025-10-12 22:19:26,592 | INFO     | PID=240871 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 18:20:03] 2025-10-12 22:19:26,592 | INFO     | .. there are 17 such processes running
[2025-10-12 18:20:03] 2025-10-12 22:19:26,592 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 18:20:03] 2025-10-12 22:19:26,593 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 18:20:03] 2025-10-12 22:19:26,593 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 18:20:03] 2025-10-12 22:19:35,372 | INFO     | [monitor] cgroup control has ended
[2025-10-12 18:20:03] 2025-10-12 22:19:36,094 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140480857749312)>', '<ExcThread(monitor, started 140480352331520)>']
[2025-10-12 18:20:03] 2025-10-12 22:19:36,653 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 18:20:03] 2025-10-12 22:19:36,653 | INFO     | [monitor] control thread has ended
[2025-10-12 18:20:03] 2025-10-12 22:19:41,120 | INFO     | all workflow threads have been joined
[2025-10-12 18:20:03] 2025-10-12 22:19:41,120 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 18:20:03] 2025-10-12 22:19:41,121 | INFO     | traces error code: 0
[2025-10-12 18:20:03] 2025-10-12 22:19:41,121 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 18:20:03] 2025-10-12 22:19:41,882 [wrapper] ==== pilot stdout END ====
[2025-10-12 18:20:03] 2025-10-12 22:19:41,943 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 18:20:03] 2025-10-12 22:19:41,967 [wrapper] pilotpid: 240871
[2025-10-12 18:20:03] 2025-10-12 22:19:41,983 [wrapper] Pilot exit status: 0
[2025-10-12 18:20:03] 2025-10-12 22:19:42,093 [wrapper] pandaids: 6840428498
[2025-10-12 18:20:03] 2025-10-12 22:19:42,168 [wrapper] cleanup supervisor_pilot  578583 240872
[2025-10-12 18:20:03] 2025-10-12 22:19:42,172 [wrapper] Test setup, not cleaning
[2025-10-12 18:20:03] 2025-10-12 22:19:42,176 [wrapper] apfmon messages muted
[2025-10-12 18:20:03] 2025-10-12 22:19:42,179 [wrapper] ==== wrapper stdout END ====
[2025-10-12 18:20:03] 2025-10-12 22:19:42,183 [wrapper] ==== wrapper stderr END ====
[2025-10-12 18:20:03]  *** Error codes and diagnostics ***
[2025-10-12 18:20:03]     "exeErrorCode": 0,
[2025-10-12 18:20:03]     "exeErrorDiag": "",
[2025-10-12 18:20:03]     "pilotErrorCode": 0,
[2025-10-12 18:20:03]     "pilotErrorDiag": "",
[2025-10-12 18:20:03]  *** Listing of results directory ***
[2025-10-12 18:20:03] total 414160
[2025-10-12 18:20:03] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 12:49 pilot3.tar.gz
[2025-10-12 18:20:03] -rwx------. 1 boincer umatlas     36292 Oct 12 12:50 runpilot2-wrapper.sh
[2025-10-12 18:20:03] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 12:50 queuedata.json
[2025-10-12 18:20:03] -rw-r--r--. 1 boincer umatlas       100 Oct 12 16:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 18:20:03] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 16:01 run_atlas
[2025-10-12 18:20:03] -rw-r--r--. 1 boincer umatlas       105 Oct 12 16:01 job.xml
[2025-10-12 18:20:03] -rw-r--r--. 2 boincer umatlas 222262120 Oct 12 16:01 EVNT.46676267._001952.pool.root.1
[2025-10-12 18:20:03] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 16:01 start_atlas.sh
[2025-10-12 18:20:03] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 16:01 shared
[2025-10-12 18:20:03] -rw-r--r--. 2 boincer umatlas    569675 Oct 12 16:01 input.tar.gz
[2025-10-12 18:20:03] -rw-r--r--. 1 boincer umatlas         0 Oct 12 16:01 boinc_lockfile
[2025-10-12 18:20:03] -rw-r--r--. 1 boincer umatlas      2548 Oct 12 16:01 pandaJob.out
[2025-10-12 18:20:03] -rw-------. 1 boincer umatlas    975536 Oct 12 16:02 agis_schedconf.cvmfs.json
[2025-10-12 18:20:03] -rw-------. 1 boincer umatlas   1560580 Oct 12 16:02 agis_ddmendpoints.agis.ALL.json
[2025-10-12 18:20:03] drwx------. 5 boincer umatlas      4096 Oct 12 16:02 pilot3
[2025-10-12 18:20:03] -rw-------. 1 boincer umatlas 194953323 Oct 12 18:17 HITS.46676269._084100.pool.root.1
[2025-10-12 18:20:03] -rw-r--r--. 1 boincer umatlas       529 Oct 12 18:17 boinc_task_state.xml
[2025-10-12 18:20:03] -rw-------. 1 boincer umatlas      1045 Oct 12 18:18 memory_monitor_summary.json
[2025-10-12 18:20:03] -rw-------. 1 boincer umatlas    377973 Oct 12 18:18 log.46676269._084100.job.log.tgz.1
[2025-10-12 18:20:03] -rw-------. 1 boincer umatlas        95 Oct 12 18:18 pilot_heartbeat.json
[2025-10-12 18:20:03] -rw-------. 1 boincer umatlas      7827 Oct 12 18:18 heartbeat.json
[2025-10-12 18:20:03] -rw-r--r--. 1 boincer umatlas      6859 Oct 12 18:19 init_data.xml
[2025-10-12 18:20:03] -rw-------. 1 boincer umatlas      5010 Oct 12 18:19 pilotlog.txt
[2025-10-12 18:20:03] -rw-------. 1 boincer umatlas   1111060 Oct 12 18:19 log.46676269._084100.job.log.1
[2025-10-12 18:20:03] -rw-------. 1 boincer umatlas       357 Oct 12 18:19 output.list
[2025-10-12 18:20:03] -rw-r--r--. 1 boincer umatlas       620 Oct 12 18:19 runtime_log
[2025-10-12 18:20:03] -rw-------. 1 boincer umatlas   1505280 Oct 12 18:19 result.tar.gz
[2025-10-12 18:20:03] -rw-r--r--. 1 boincer umatlas      8713 Oct 12 18:19 runtime_log.err
[2025-10-12 18:20:03] -rw-------. 1 boincer umatlas       654 Oct 12 18:19 AdjLDmCSES8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmLjkNDmbuCkgn.diag
[2025-10-12 18:20:03] -rw-r--r--. 1 boincer umatlas        27 Oct 12 18:20 wrapper_checkpoint.txt
[2025-10-12 18:20:03] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 18:20 boinc_mmap_file
[2025-10-12 18:20:03] -rw-r--r--. 1 boincer umatlas     21113 Oct 12 18:20 stderr.txt
[2025-10-12 18:20:03] HITS file was successfully produced:
[2025-10-12 18:20:03] -rw-------. 1 boincer umatlas 194953323 Oct 12 18:17 shared/HITS.pool.root.1
[2025-10-12 18:20:03]  *** Contents of shared directory: ***
[2025-10-12 18:20:03] total 409496
[2025-10-12 18:20:03] -rw-r--r--. 2 boincer umatlas 222262120 Oct 12 16:01 ATLAS.root_0
[2025-10-12 18:20:03] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 16:01 start_atlas.sh
[2025-10-12 18:20:03] -rw-r--r--. 2 boincer umatlas    569675 Oct 12 16:01 input.tar.gz
[2025-10-12 18:20:03] -rw-------. 1 boincer umatlas 194953323 Oct 12 18:17 HITS.pool.root.1
[2025-10-12 18:20:03] -rw-------. 1 boincer umatlas   1505280 Oct 12 18:19 result.tar.gz
18:20:05 (235773): run_atlas exited; CPU time 46360.937423
18:20:05 (235773): called boinc_finish(0)

</stderr_txt>
]]>

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