Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:54:53 (11195): wrapper (7.7.26015): starting
15:54:53 (11195): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 15:54:53] Arguments: --nthreads 8
[2025-10-12 15:54:53] Threads: 8
[2025-10-12 15:54:53] Checking for CVMFS
[2025-10-12 15:54:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 15:54:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 15:54:54] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 15:54:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 15:54:54] 2.11.2.0 2892 206295 82372 151635 1 57 12881878 20275200 1 130560 1 74441548 99.977 10721161 9962 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 15:54:54] CVMFS is ok
[2025-10-12 15:54:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 15:54:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 15:54:54] Further information can be found at the LHC@home message board.
[2025-10-12 15:54:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 15:54:54] Checking for apptainer binary...
[2025-10-12 15:54:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 15:54:54] Running /usr/bin/apptainer --version
[2025-10-12 15:54:54] apptainer version 1.3.2-1.el7
[2025-10-12 15:54:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 15:54:55] c-204-27.aglt2.org
[2025-10-12 15:54:55] apptainer works
[2025-10-12 15:54:55] Set ATHENA_PROC_NUMBER=8
[2025-10-12 15:54:55] Set ATHENA_CORE_NUMBER=8
[2025-10-12 15:54:56] Starting ATLAS job with PandaID=6840081297
[2025-10-12 15:54:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 18:05:32]  *** The last 200 lines of the pilot log: ***
[2025-10-12 18:05:32] 2025-10-12 22:04:31,776 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 18:05:32] 2025-10-12 22:04:31,776 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 18:05:32] 2025-10-12 22:04:31,777 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 18:05:32] 2025-10-12 22:04:31,777 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 18:05:32] 2025-10-12 22:04:31,779 | INFO     | fitting pss+swap vs Time
[2025-10-12 18:05:32] 2025-10-12 22:04:31,780 | INFO     | sum of square deviations: 635130048.0
[2025-10-12 18:05:32] 2025-10-12 22:04:31,780 | INFO     | sum of deviations: -28913145.999998093
[2025-10-12 18:05:32] 2025-10-12 22:04:31,780 | INFO     | mean x: 1760302787.0
[2025-10-12 18:05:32] 2025-10-12 22:04:31,780 | INFO     | mean y: 2468284.0866141734
[2025-10-12 18:05:32] 2025-10-12 22:04:31,781 | INFO     | -- intersect: 82602882.73299178
[2025-10-12 18:05:32] 2025-10-12 22:04:31,781 | INFO     | intersect: 82602882.73299178
[2025-10-12 18:05:32] 2025-10-12 22:04:31,781 | INFO     | chi2: 2.4531897663907816
[2025-10-12 18:05:32] 2025-10-12 22:04:31,781 | INFO     | sum of square deviations: 563026370.5
[2025-10-12 18:05:32] 2025-10-12 22:04:31,782 | INFO     | sum of deviations: 8547296088.0
[2025-10-12 18:05:32] 2025-10-12 22:04:31,782 | INFO     | mean x: 1760302634.5
[2025-10-12 18:05:32] 2025-10-12 22:04:31,782 | INFO     | mean y: 2485833.0
[2025-10-12 18:05:32] 2025-10-12 22:04:31,782 | INFO     | -- intersect: -26720645817.470257
[2025-10-12 18:05:32] 2025-10-12 22:04:31,782 | INFO     | intersect: -26720645817.470257
[2025-10-12 18:05:32] 2025-10-12 22:04:31,783 | INFO     | chi2: 1.614693666805844
[2025-10-12 18:05:32] 2025-10-12 22:04:31,783 | INFO     | current chi2=1.614693666805844 (change=34.17983032020235 %)
[2025-10-12 18:05:32] 2025-10-12 22:04:31,783 | INFO     | sum of square deviations: 496597218.0
[2025-10-12 18:05:32] 2025-10-12 22:04:31,783 | INFO     | sum of deviations: 8204088554.999996
[2025-10-12 18:05:32] 2025-10-12 22:04:31,784 | INFO     | mean x: 1760302482.0
[2025-10-12 18:05:32] 2025-10-12 22:04:31,784 | INFO     | mean y: 2485044.683760684
[2025-10-12 18:05:32] 2025-10-12 22:04:31,784 | INFO     | -- intersect: -29078784286.781338
[2025-10-12 18:05:32] 2025-10-12 22:04:31,784 | INFO     | intersect: -29078784286.781338
[2025-10-12 18:05:32] 2025-10-12 22:04:31,784 | INFO     | chi2: 1.617355163910657
[2025-10-12 18:05:32] 2025-10-12 22:04:31,784 | INFO     | current chi2=1.617355163910657 (change=-0.16482984726618863 %)
[2025-10-12 18:05:32] 2025-10-12 22:04:31,785 | INFO     | right removable region: 116
[2025-10-12 18:05:32] 2025-10-12 22:04:31,785 | INFO     | sum of square deviations: 563026370.5
[2025-10-12 18:05:32] 2025-10-12 22:04:31,785 | INFO     | sum of deviations: -19156715567.5
[2025-10-12 18:05:32] 2025-10-12 22:04:31,785 | INFO     | mean x: 1760302939.5
[2025-10-12 18:05:32] 2025-10-12 22:04:31,786 | INFO     | mean y: 2508025.418032787
[2025-10-12 18:05:32] 2025-10-12 22:04:31,786 | INFO     | -- intersect: 59896013004.037254
[2025-10-12 18:05:32] 2025-10-12 22:04:31,786 | INFO     | intersect: 59896013004.037254
[2025-10-12 18:05:32] 2025-10-12 22:04:31,786 | INFO     | chi2: 0.9827423766315708
[2025-10-12 18:05:32] 2025-10-12 22:04:31,786 | INFO     | current chi2=0.9827423766315708 (change=59.940221906378824 %)
[2025-10-12 18:05:32] 2025-10-12 22:04:31,787 | INFO     | sum of square deviations: 496597218.0
[2025-10-12 18:05:32] 2025-10-12 22:04:31,787 | INFO     | sum of deviations: -16540058500.0
[2025-10-12 18:05:32] 2025-10-12 22:04:31,787 | INFO     | mean x: 1760303092.0
[2025-10-12 18:05:32] 2025-10-12 22:04:31,787 | INFO     | mean y: 2501919.752136752
[2025-10-12 18:05:32] 2025-10-12 22:04:31,787 | INFO     | -- intersect: 58632544666.81175
[2025-10-12 18:05:32] 2025-10-12 22:04:31,788 | INFO     | intersect: 58632544666.81175
[2025-10-12 18:05:32] 2025-10-12 22:04:31,788 | INFO     | chi2: 0.9706422368677631
[2025-10-12 18:05:32] 2025-10-12 22:04:31,788 | INFO     | current chi2=0.9706422368677631 (change=1.2312626433472786 %)
[2025-10-12 18:05:32] 2025-10-12 22:04:31,788 | INFO     | left removable region: 20
[2025-10-12 18:05:32] 2025-10-12 22:04:31,788 | INFO     | sum of square deviations: 274312120.0
[2025-10-12 18:05:32] 2025-10-12 22:04:31,789 | INFO     | sum of deviations: 123577155.0
[2025-10-12 18:05:32] 2025-10-12 22:04:31,789 | INFO     | mean x: 1760303061.5
[2025-10-12 18:05:32] 2025-10-12 22:04:31,789 | INFO     | mean y: 2498485.6875
[2025-10-12 18:05:32] 2025-10-12 22:04:31,789 | INFO     | -- intersect: -790515123.3282446
[2025-10-12 18:05:32] 2025-10-12 22:04:31,789 | INFO     | intersect: -790515123.3282446
[2025-10-12 18:05:32] 2025-10-12 22:04:31,789 | INFO     | chi2: 0.013182424659262731
[2025-10-12 18:05:32] 2025-10-12 22:04:31,790 | INFO     | -- intersect: -790515123.3282446
[2025-10-12 18:05:32] 2025-10-12 22:04:31,790 | INFO     | current memory leak: 0.45 B/s (using 96 data points, chi2=0.01)
[2025-10-12 18:05:32] 2025-10-12 22:04:31,790 | INFO     | could have reported an average CPU frequency of 1995 MHz (8 samples)
[2025-10-12 18:05:32] 2025-10-12 22:04:31,790 | INFO     | ..............................
[2025-10-12 18:05:32] 2025-10-12 22:04:31,790 | INFO     | . Timing measurements:
[2025-10-12 18:05:32] 2025-10-12 22:04:31,790 | INFO     | . get job = 0 s
[2025-10-12 18:05:32] 2025-10-12 22:04:31,791 | INFO     | . initial setup = 2 s
[2025-10-12 18:05:32] 2025-10-12 22:04:31,791 | INFO     | . payload setup = 8 s
[2025-10-12 18:05:32] 2025-10-12 22:04:31,791 | INFO     | . stage-in = 0 s
[2025-10-12 18:05:32] 2025-10-12 22:04:31,791 | INFO     | . payload execution = 7717 s
[2025-10-12 18:05:32] 2025-10-12 22:04:31,791 | INFO     | . stage-out = 1 s
[2025-10-12 18:05:32] 2025-10-12 22:04:31,791 | INFO     | . log creation = 0 s
[2025-10-12 18:05:32] 2025-10-12 22:04:31,791 | INFO     | ..............................
[2025-10-12 18:05:32] 2025-10-12 22:04:32,100 | INFO     | 
[2025-10-12 18:05:32] 2025-10-12 22:04:32,100 | INFO     | job summary report
[2025-10-12 18:05:32] 2025-10-12 22:04:32,100 | INFO     | --------------------------------------------------
[2025-10-12 18:05:32] 2025-10-12 22:04:32,101 | INFO     | PanDA job id: 6840081297
[2025-10-12 18:05:32] 2025-10-12 22:04:32,101 | INFO     | task id: 46676269
[2025-10-12 18:05:32] 2025-10-12 22:04:32,101 | INFO     | errors: (none)
[2025-10-12 18:05:32] 2025-10-12 22:04:32,101 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 18:05:32] 2025-10-12 22:04:32,101 | INFO     | pilot state: finished 
[2025-10-12 18:05:32] 2025-10-12 22:04:32,102 | INFO     | transexitcode: 0
[2025-10-12 18:05:32] 2025-10-12 22:04:32,102 | INFO     | exeerrorcode: 0
[2025-10-12 18:05:32] 2025-10-12 22:04:32,102 | INFO     | exeerrordiag: 
[2025-10-12 18:05:32] 2025-10-12 22:04:32,102 | INFO     | exitcode: 0
[2025-10-12 18:05:32] 2025-10-12 22:04:32,102 | INFO     | exitmsg: OK
[2025-10-12 18:05:32] 2025-10-12 22:04:32,102 | INFO     | cpuconsumptiontime: 57945 s
[2025-10-12 18:05:32] 2025-10-12 22:04:32,103 | INFO     | nevents: 400
[2025-10-12 18:05:32] 2025-10-12 22:04:32,103 | INFO     | neventsw: 0
[2025-10-12 18:05:32] 2025-10-12 22:04:32,103 | INFO     | pid: 21481
[2025-10-12 18:05:32] 2025-10-12 22:04:32,103 | INFO     | pgrp: 21481
[2025-10-12 18:05:32] 2025-10-12 22:04:32,103 | INFO     | corecount: 8
[2025-10-12 18:05:32] 2025-10-12 22:04:32,103 | INFO     | event service: False
[2025-10-12 18:05:32] 2025-10-12 22:04:32,104 | INFO     | sizes: {0: 2348855, 6: 2349117, 11: 2349145, 7729: 2376746, 7731: 2385744, 7734: 2385800, 7741: 2386122}
[2025-10-12 18:05:32] 2025-10-12 22:04:32,104 | INFO     | --------------------------------------------------
[2025-10-12 18:05:32] 2025-10-12 22:04:32,104 | INFO     | 
[2025-10-12 18:05:32] 2025-10-12 22:04:32,104 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 18:05:32] 2025-10-12 22:04:32,132 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 18:05:32] 2025-10-12 22:04:32,133 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 18:05:32] 2025-10-12 22:04:32,133 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 18:05:32] 2025-10-12 22:04:32,133 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 18:05:32] 2025-10-12 22:04:32,134 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 18:05:32] 2025-10-12 22:04:32,134 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 18:05:32] 2025-10-12 22:04:32,134 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 18:05:32] 2025-10-12 22:04:32,134 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 18:05:32] 2025-10-12 22:04:32,134 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 18:05:32] 2025-10-12 22:04:32,135 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 18:05:32] 2025-10-12 22:04:32,135 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 18:05:32] 2025-10-12 22:04:32,135 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 18:05:32] 2025-10-12 22:04:32,135 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 18:05:32] 2025-10-12 22:04:32,135 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 18:05:32] 2025-10-12 22:04:32,135 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 18:05:32] 2025-10-12 22:04:32,136 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 18:05:32] 2025-10-12 22:04:32,136 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 18:05:32] 2025-10-12 22:04:32,136 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 18:05:32] 2025-10-12 22:04:32,136 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 18:05:32] 2025-10-12 22:04:32,136 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 18:05:32] 2025-10-12 22:04:32,136 | INFO     | job 6840081297 has completed (purged errors)
[2025-10-12 18:05:32] 2025-10-12 22:04:32,137 | INFO     | overall cleanup function is called
[2025-10-12 18:05:32] 2025-10-12 22:04:33,145 | INFO     | --- collectZombieJob: --- 10, [21481]
[2025-10-12 18:05:32] 2025-10-12 22:04:33,145 | INFO     | zombie collector waiting for pid 21481
[2025-10-12 18:05:32] 2025-10-12 22:04:33,145 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 18:05:32] 2025-10-12 22:04:33,145 | INFO     | collected zombie processes
[2025-10-12 18:05:32] 2025-10-12 22:04:33,145 | INFO     | will attempt to kill all subprocesses of pid=21481
[2025-10-12 18:05:32] 2025-10-12 22:04:33,238 | INFO     | process IDs to be killed: [21481] (in reverse order)
[2025-10-12 18:05:32] 2025-10-12 22:04:33,292 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 18:05:32] 2025-10-12 22:04:33,293 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 18:05:32] 2025-10-12 22:04:33,297 | INFO     | did not find any defunct processes belonging to 21481
[2025-10-12 18:05:32] 2025-10-12 22:04:33,299 | INFO     | did not find any defunct processes belonging to 21481
[2025-10-12 18:05:32] 2025-10-12 22:04:33,300 | INFO     | ready for new job
[2025-10-12 18:05:32] 2025-10-12 22:04:33,300 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 18:05:32] 2025-10-12 22:04:33,301 | INFO     | ***************************************
[2025-10-12 18:05:32] 2025-10-12 22:04:33,301 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 18:05:32] 2025-10-12 22:04:33,302 | INFO     | ***************************************
[2025-10-12 18:05:32] 2025-10-12 22:04:33,302 | INFO     | 
[2025-10-12 18:05:32] 2025-10-12 22:04:33,302 | INFO     | architecture information:
[2025-10-12 18:05:32] 2025-10-12 22:04:33,303 | INFO     | executing command: cat /etc/os-release
[2025-10-12 18:05:32] 2025-10-12 22:04:33,320 | INFO     | cat /etc/os-release:
[2025-10-12 18:05:32] NAME="CentOS Linux"
[2025-10-12 18:05:32] VERSION="7 (Core)"
[2025-10-12 18:05:32] ID="centos"
[2025-10-12 18:05:32] ID_LIKE="rhel fedora"
[2025-10-12 18:05:32] VERSION_ID="7"
[2025-10-12 18:05:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 18:05:32] ANSI_COLOR="0;31"
[2025-10-12 18:05:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 18:05:32] HOME_URL="https://www.centos.org/"
[2025-10-12 18:05:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 18:05:32] 
[2025-10-12 18:05:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 18:05:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 18:05:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 18:05:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 18:05:32] 
[2025-10-12 18:05:32] 2025-10-12 22:04:33,321 | INFO     | ***************************************
[2025-10-12 18:05:32] 2025-10-12 22:04:33,824 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 18:05:32] 2025-10-12 22:04:33,843 | INFO     | sufficient remaining disk space (18554552320 B)
[2025-10-12 18:05:32] 2025-10-12 22:04:33,843 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 18:05:32] 2025-10-12 22:04:33,844 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 18:05:32] 2025-10-12 22:04:33,844 | INFO     | update_server=False
[2025-10-12 18:05:32] 2025-10-12 22:04:33,844 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 18:05:32] 2025-10-12 22:04:33,844 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:05:32] 2025-10-12 22:04:34,363 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:05:32] 2025-10-12 22:04:34,363 | INFO     | aborting loop
[2025-10-12 18:05:32] 2025-10-12 22:04:34,556 | INFO     | all job control threads have been joined
[2025-10-12 18:05:32] 2025-10-12 22:04:34,641 | INFO     | all data control threads have been joined
[2025-10-12 18:05:32] 2025-10-12 22:04:34,849 | INFO     | [job] retrieve thread has finished
[2025-10-12 18:05:32] 2025-10-12 22:04:34,850 | INFO     | [job] queue monitor thread has finished
[2025-10-12 18:05:32] 2025-10-12 22:04:34,903 | INFO     | [job] validate thread has finished
[2025-10-12 18:05:32] 2025-10-12 22:04:34,910 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 18:05:32] 2025-10-12 22:04:34,961 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 18:05:32] 2025-10-12 22:04:35,168 | INFO     | all payload control threads have been joined
[2025-10-12 18:05:32] 2025-10-12 22:04:35,224 | INFO     | [payload] validate_post thread has finished
[2025-10-12 18:05:32] 2025-10-12 22:04:35,310 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 18:05:32] 2025-10-12 22:04:35,371 | INFO     | [job] job monitor thread has finished
[2025-10-12 18:05:32] 2025-10-12 22:04:35,562 | INFO     | [job] control thread has finished
[2025-10-12 18:05:32] 2025-10-12 22:04:35,636 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 18:05:32] 2025-10-12 22:04:35,642 | INFO     | [data] control thread has finished
[2025-10-12 18:05:32] 2025-10-12 22:04:35,691 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 18:05:32] 2025-10-12 22:04:36,173 | INFO     | [payload] control thread has finished
[2025-10-12 18:05:32] 2025-10-12 22:04:36,212 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 18:05:32] 2025-10-12 22:04:36,225 | INFO     | [payload] failed_post thread has finished
[2025-10-12 18:05:32] 2025-10-12 22:04:36,309 | INFO     | [data] copytool_in thread has finished
[2025-10-12 18:05:32] 2025-10-12 22:04:37,316 | INFO     | [data] copytool_out thread has finished
[2025-10-12 18:05:32] 2025-10-12 22:04:39,642 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 18:05:32] 2025-10-12 22:05:04,231 | INFO     | PID=15044 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 18:05:32] 2025-10-12 22:05:04,231 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 18:05:32] 2025-10-12 22:05:04,239 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 18:05:32] 2025-10-12 22:05:04,239 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 18:05:32] 2025-10-12 22:05:25,633 | INFO     | [monitor] cgroup control has ended
[2025-10-12 18:05:32] 2025-10-12 22:05:27,422 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139996134258496)>', '<ExcThread(monitor, started 139995314640640)>']
[2025-10-12 18:05:32] 2025-10-12 22:05:28,353 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 18:05:32] 2025-10-12 22:05:28,353 | INFO     | [monitor] control thread has ended
[2025-10-12 18:05:32] 2025-10-12 22:05:32,427 | INFO     | all workflow threads have been joined
[2025-10-12 18:05:32] 2025-10-12 22:05:32,428 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 18:05:32] 2025-10-12 22:05:32,428 | INFO     | traces error code: 0
[2025-10-12 18:05:32] 2025-10-12 22:05:32,428 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 18:05:32] 2025-10-12 22:05:32,556 [wrapper] ==== pilot stdout END ====
[2025-10-12 18:05:32] 2025-10-12 22:05:32,561 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 18:05:32] 2025-10-12 22:05:32,566 [wrapper] pilotpid: 15044
[2025-10-12 18:05:32] 2025-10-12 22:05:32,570 [wrapper] Pilot exit status: 0
[2025-10-12 18:05:32] 2025-10-12 22:05:32,590 [wrapper] pandaids: 6840081297
[2025-10-12 18:05:32] 2025-10-12 22:05:32,649 [wrapper] cleanup supervisor_pilot  8121 15045
[2025-10-12 18:05:32] 2025-10-12 22:05:32,654 [wrapper] Test setup, not cleaning
[2025-10-12 18:05:32] 2025-10-12 22:05:32,658 [wrapper] apfmon messages muted
[2025-10-12 18:05:32] 2025-10-12 22:05:32,663 [wrapper] ==== wrapper stdout END ====
[2025-10-12 18:05:32] 2025-10-12 22:05:32,667 [wrapper] ==== wrapper stderr END ====
[2025-10-12 18:05:32]  *** Error codes and diagnostics ***
[2025-10-12 18:05:32]     "exeErrorCode": 0,
[2025-10-12 18:05:32]     "exeErrorDiag": "",
[2025-10-12 18:05:32]     "pilotErrorCode": 0,
[2025-10-12 18:05:32]     "pilotErrorDiag": "",
[2025-10-12 18:05:32]  *** Listing of results directory ***
[2025-10-12 18:05:32] total 413056
[2025-10-12 18:05:32] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 09:22 pilot3.tar.gz
[2025-10-12 18:05:32] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 09:39 queuedata.json
[2025-10-12 18:05:32] -rwx------ 1 boincer umatlas     36292 Oct 12 09:40 runpilot2-wrapper.sh
[2025-10-12 18:05:32] -rw-r--r-- 1 boincer umatlas       100 Oct 12 15:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 18:05:32] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 15:54 run_atlas
[2025-10-12 18:05:32] -rw-r--r-- 1 boincer umatlas       105 Oct 12 15:54 job.xml
[2025-10-12 18:05:32] -rw-r--r-- 2 boincer umatlas 220977103 Oct 12 15:54 EVNT.46676267._003944.pool.root.1
[2025-10-12 18:05:32] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 15:54 start_atlas.sh
[2025-10-12 18:05:32] drwxrwx--x 2 boincer umatlas      4096 Oct 12 15:54 shared
[2025-10-12 18:05:32] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 15:54 input.tar.gz
[2025-10-12 18:05:32] -rw-r--r-- 1 boincer umatlas         0 Oct 12 15:54 boinc_lockfile
[2025-10-12 18:05:32] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 15:54 pandaJob.out
[2025-10-12 18:05:32] -rw------- 1 boincer umatlas    975536 Oct 12 15:55 agis_schedconf.cvmfs.json
[2025-10-12 18:05:32] -rw------- 1 boincer umatlas   1560580 Oct 12 15:55 agis_ddmendpoints.agis.ALL.json
[2025-10-12 18:05:32] drwx------ 5 boincer umatlas      4096 Oct 12 15:55 pilot3
[2025-10-12 18:05:32] -rw------- 1 boincer umatlas 195195864 Oct 12 18:03 HITS.46676269._079665.pool.root.1
[2025-10-12 18:05:32] -rw------- 1 boincer umatlas        95 Oct 12 18:04 pilot_heartbeat.json
[2025-10-12 18:05:32] -rw-r--r-- 1 boincer umatlas       529 Oct 12 18:04 boinc_task_state.xml
[2025-10-12 18:05:32] -rw------- 1 boincer umatlas      1050 Oct 12 18:04 memory_monitor_summary.json
[2025-10-12 18:05:32] -rw-r--r-- 1 boincer umatlas      5909 Oct 12 18:04 init_data.xml
[2025-10-12 18:05:32] -rw------- 1 boincer umatlas    359298 Oct 12 18:04 log.46676269._079665.job.log.tgz.1
[2025-10-12 18:05:32] -rw------- 1 boincer umatlas      7840 Oct 12 18:04 heartbeat.json
[2025-10-12 18:05:32] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 18:05 boinc_mmap_file
[2025-10-12 18:05:32] -rw-r--r-- 1 boincer umatlas        27 Oct 12 18:05 wrapper_checkpoint.txt
[2025-10-12 18:05:32] -rw------- 1 boincer umatlas      4746 Oct 12 18:05 pilotlog.txt
[2025-10-12 18:05:32] -rw------- 1 boincer umatlas   1089273 Oct 12 18:05 log.46676269._079665.job.log.1
[2025-10-12 18:05:32] -rw------- 1 boincer umatlas       357 Oct 12 18:05 output.list
[2025-10-12 18:05:32] -rw-r--r-- 1 boincer umatlas       620 Oct 12 18:05 runtime_log
[2025-10-12 18:05:32] -rw------- 1 boincer umatlas   1464320 Oct 12 18:05 result.tar.gz
[2025-10-12 18:05:32] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 18:05 runtime_log.err
[2025-10-12 18:05:32] -rw------- 1 boincer umatlas       660 Oct 12 18:05 JAhLDmeUBS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmy3jNDm2VOtsm.diag
[2025-10-12 18:05:32] -rw-r--r-- 1 boincer umatlas     20834 Oct 12 18:05 stderr.txt
[2025-10-12 18:05:32] HITS file was successfully produced:
[2025-10-12 18:05:32] -rw------- 1 boincer umatlas 195195864 Oct 12 18:03 shared/HITS.pool.root.1
[2025-10-12 18:05:32]  *** Contents of shared directory: ***
[2025-10-12 18:05:32] total 408436
[2025-10-12 18:05:32] -rw-r--r-- 2 boincer umatlas 220977103 Oct 12 15:54 ATLAS.root_0
[2025-10-12 18:05:32] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 15:54 start_atlas.sh
[2025-10-12 18:05:32] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 15:54 input.tar.gz
[2025-10-12 18:05:32] -rw------- 1 boincer umatlas 195195864 Oct 12 18:03 HITS.pool.root.1
[2025-10-12 18:05:32] -rw------- 1 boincer umatlas   1464320 Oct 12 18:05 result.tar.gz
18:05:34 (11195): run_atlas exited; CPU time 57889.207364
18:05:34 (11195): called boinc_finish(0)

</stderr_txt>
]]>

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