Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-13 10:33:18 (39732): vboxwrapper version 26210
2025-10-13 10:33:18 (39732): BOINC client version: 8.0.2
2025-10-13 10:33:19 (39732): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-10-13 10:33:19 (39732): Successfully copied 'init_data.xml' to the shared directory.
2025-10-13 10:33:20 (39732): Create VM. (boinc_a610ea7d9e126b58, slot#0)
2025-10-13 10:33:20 (39732): Setting Memory Size for VM. (6000MB)
2025-10-13 10:33:20 (39732): Setting CPU Count for VM. (3)
2025-10-13 10:33:21 (39732): Setting Chipset Options for VM.
2025-10-13 10:33:21 (39732): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-13 10:33:21 (39732): Setting Boot Options for VM.
2025-10-13 10:33:22 (39732): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-13 10:33:22 (39732): Enabling VM Network Access.
2025-10-13 10:33:22 (39732): Disabling USB Support for VM.
2025-10-13 10:33:22 (39732): Disabling COM Port Support for VM.
2025-10-13 10:33:23 (39732): Disabling LPT Port Support for VM.
2025-10-13 10:33:23 (39732): Disabling Audio Support for VM.
2025-10-13 10:33:23 (39732): Disabling Clipboard Support for VM.
2025-10-13 10:33:23 (39732): Disabling Drag and Drop Support for VM.
2025-10-13 10:33:24 (39732): Adding storage controller(s) to VM.
2025-10-13 10:33:24 (39732): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-13 10:33:24 (39732): Adding VirtualBox Guest Additions to VM.
2025-10-13 10:33:25 (39732): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-13 10:33:25 (39732): forwarding host port 62355 to guest port 80
2025-10-13 10:33:25 (39732): Enabling remote desktop for VM.
2025-10-13 10:33:26 (39732): Enabling shared directory for VM.
2025-10-13 10:33:27 (39732): Starting VM using VBoxManage interface. (boinc_a610ea7d9e126b58, slot#0)
2025-10-13 10:33:32 (39732): Successfully started VM. (PID = '39852')
2025-10-13 10:33:32 (39732): Reporting VM Process ID to BOINC.
2025-10-13 10:33:32 (39732): Guest Log: BIOS: VirtualBox 7.0.6
2025-10-13 10:33:32 (39732): Guest Log: CPUID EDX: 0x178bfbff
2025-10-13 10:33:32 (39732): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-13 10:33:32 (39732): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-13 10:33:32 (39732): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-13 10:33:32 (39732): Detected: Web Application Enabled (http://localhost:62355)
2025-10-13 10:33:32 (39732): Detected: Remote Desktop Enabled (localhost:62356)
2025-10-13 10:33:32 (39732): Preference change detected
2025-10-13 10:33:32 (39732): Setting CPU throttle for VM. (100%)
2025-10-13 10:33:32 (39732): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-13 10:33:34 (39732): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-13 10:33:34 (39732): Guest Log: BIOS: Booting from Hard Disk...
2025-10-13 10:33:37 (39732): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-13 10:33:37 (39732): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-13 10:33:37 (39732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-13 10:34:17 (39732): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-13 10:34:17 (39732): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-13 10:34:22 (39732): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-13 10:34:22 (39732): Guest Log: 00:00:00.000104 main     Log opened 2025-10-13T10:34:20.241100000Z
2025-10-13 10:34:22 (39732): Guest Log: 00:00:00.000184 main     OS Product: Linux
2025-10-13 10:34:22 (39732): Guest Log: 00:00:00.000209 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-13 10:34:22 (39732): Guest Log: 00:00:00.000229 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-13 10:34:22 (39732): Guest Log: 00:00:00.000247 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-13 10:34:22 (39732): Guest Log: 00:00:00.000248 main     Process ID: 1342
2025-10-13 10:34:22 (39732): Guest Log: 00:00:00.000248 main     Package type: LINUX_64BITS_GENERIC
2025-10-13 10:34:22 (39732): Guest Log: 00:00:00.000918 main     5.2.32 r132073 started. Verbose level = 0
2025-10-13 10:34:22 (39732): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-13 10:34:22 (39732): Guest Log: [INFO] Mounting shared directory
2025-10-13 10:34:22 (39732): Guest Log: [INFO] Checking for init_data.xml
2025-10-13 10:34:24 (39732): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-13 10:34:24 (39732): Guest Log: [INFO] Detected branch: prod
2025-10-13 10:34:24 (39732): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-13 10:34:24 (39732): Guest Log: Copying input files
2025-10-13 10:34:25 (39732): Guest Log: Copied input files into RunAtlas.
2025-10-13 10:34:25 (39732): Guest Log: Detected user-configured HTTP proxy at http://192.168.0.39:3128 - will set in /etc/cvmfs/default.local
2025-10-13 10:34:32 (39732): Guest Log: 00:00:10.002376 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 225 696 016 000ns (GuestNow=1 760 344 434 547 146 000 ns GuestLast=1 760 351 660 243 162 000 ns fSetTimeLastLoop=true )
2025-10-13 10:34:52 (39732): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-13 10:34:52 (39732): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-13 10:34:52 (39732): Guest Log: 2.6.3.0 1617 0 31656 151654 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.39:3128 1
2025-10-13 10:34:53 (39732): Guest Log: copied the webapp to /var/www
2025-10-13 10:34:53 (39732): Guest Log: ATHENA_PROC_NUMBER=3
2025-10-13 10:34:53 (39732): Guest Log: ATHENA_CORE_NUMBER=3
2025-10-13 10:34:53 (39732): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-13 10:34:53 (39732): Guest Log:  *** Starting ATLAS job. (PandaID=6840390794 taskID=46676269) ***
2025-10-13 12:13:35 (39732): Status Report: Elapsed Time: '6000.000000'
2025-10-13 12:13:35 (39732): Status Report: CPU Time: '16498.296875'
2025-10-13 13:53:38 (39732): Status Report: Elapsed Time: '12000.000000'
2025-10-13 13:53:38 (39732): Status Report: CPU Time: '34076.890625'
2025-10-13 14:49:01 (39732): Guest Log:  *** Job finished ***
2025-10-13 14:49:01 (39732): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-13 14:49:01 (39732): Guest Log: 2025-10-13 12:48:14,247 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-13 14:49:01 (39732): Guest Log: 2025-10-13 12:48:14,247 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-13 14:49:01 (39732): Guest Log: 2025-10-13 12:48:19,583 | INFO     | [monitor] cgroup control has ended
2025-10-13 14:49:01 (39732): Guest Log: 2025-10-13 12:48:20,159 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139776636045120)>', '<ExcThread(monitor, started 139775608612608)>']
2025-10-13 14:49:01 (39732): Guest Log: 2025-10-13 12:48:20,470 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-13 14:49:01 (39732): Guest Log: 2025-10-13 12:48:20,470 | INFO     | [monitor] control thread has ended
2025-10-13 14:49:01 (39732): Guest Log: 2025-10-13 12:48:25,164 | INFO     | all workflow threads have been joined
2025-10-13 14:49:01 (39732): Guest Log: 2025-10-13 12:48:25,164 | INFO     | end of generic workflow (traces error code: 0)
2025-10-13 14:49:01 (39732): Guest Log: 2025-10-13 12:48:25,165 | INFO     | traces error code: 0
2025-10-13 14:49:01 (39732): Guest Log: 2025-10-13 12:48:25,165 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-13 14:49:01 (39732): Guest Log: 2025-10-13 12:48:25,269 [wrapper] ==== pilot stdout END ====
2025-10-13 14:49:01 (39732): Guest Log: 2025-10-13 12:48:25,273 [wrapper] ==== wrapper stdout RESUME ====
2025-10-13 14:49:01 (39732): Guest Log: 2025-10-13 12:48:25,277 [wrapper] pilotpid: 5999
2025-10-13 14:49:01 (39732): Guest Log: 2025-10-13 12:48:25,281 [wrapper] Pilot exit status: 0
2025-10-13 14:49:01 (39732): Guest Log: 2025-10-13 12:48:25,396 [wrapper] pandaids: 6840390794
2025-10-13 14:49:01 (39732): Guest Log: 2025-10-13 12:48:25,421 [wrapper] cleanup supervisor_pilot 15179 6000
2025-10-13 14:49:01 (39732): Guest Log: 2025-10-13 12:48:25,425 [wrapper] Test setup, not cleaning
2025-10-13 14:49:01 (39732): Guest Log: 2025-10-13 12:48:25,429 [wrapper] apfmon messages muted
2025-10-13 14:49:01 (39732): Guest Log: 2025-10-13 12:48:25,434 [wrapper] ==== wrapper stdout END ====
2025-10-13 14:49:01 (39732): Guest Log: 2025-10-13 12:48:25,437 [wrapper] ==== wrapper stderr END ====
2025-10-13 14:49:01 (39732): Guest Log:  *** Error codes and diagnostics ***
2025-10-13 14:49:01 (39732): Guest Log:     "exeErrorCode": 0,
2025-10-13 14:49:01 (39732): Guest Log:     "exeErrorDiag": "",
2025-10-13 14:49:01 (39732): Guest Log:     "pilotErrorCode": 0,
2025-10-13 14:49:01 (39732): Guest Log:     "pilotErrorDiag": "",
2025-10-13 14:49:01 (39732): Guest Log:  *** Listing of results directory ***
2025-10-13 14:49:01 (39732): Guest Log: total 192472
2025-10-13 14:49:01 (39732): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 12 16:01 pilot3.tar.gz
2025-10-13 14:49:01 (39732): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 12 16:34 queuedata.json
2025-10-13 14:49:01 (39732): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 12 16:35 runpilot2-wrapper.sh
2025-10-13 14:49:01 (39732): Guest Log: -rwxr-xr-x. 1 atlas atlas      9081 Oct 13 08:33 init_data.xml
2025-10-13 14:49:01 (39732): Guest Log: -rwxr-xr-x. 1 atlas atlas    569681 Oct 13 08:33 input.tar.gz
2025-10-13 14:49:01 (39732): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 13 08:33 start_atlas.sh
2025-10-13 14:49:01 (39732): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 13 08:33 EVNT.46676267._004745.pool.root.1 -> /data/./ATLAS.root_0
2025-10-13 14:49:01 (39732): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 13 08:34 pandaJob.out
2025-10-13 14:49:01 (39732): Guest Log: -rw-------. 1 atlas atlas    972857 Oct 13 08:34 agis_schedconf.cvmfs.json
2025-10-13 14:49:01 (39732): Guest Log: drwx------. 5 atlas atlas      4096 Oct 13 08:34 pilot3
2025-10-13 14:49:01 (39732): Guest Log: -rw-------. 1 atlas atlas 188562213 Oct 13 12:47 HITS.46676269._083566.pool.root.1
2025-10-13 14:49:01 (39732): Guest Log: -rw-------. 1 atlas atlas      1030 Oct 13 12:47 memory_monitor_summary.json
2025-10-13 14:49:01 (39732): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 13 12:47 agis_ddmendpoints.agis.ALL.json
2025-10-13 14:49:01 (39732): Guest Log: -rw-------. 1 atlas atlas    381076 Oct 13 12:47 log.46676269._083566.job.log.tgz.1
2025-10-13 14:49:01 (39732): Guest Log: -rw-------. 1 atlas atlas      7821 Oct 13 12:47 heartbeat.json
2025-10-13 14:49:01 (39732): Guest Log: -rw-------. 1 atlas atlas        95 Oct 13 12:48 pilot_heartbeat.json
2025-10-13 14:49:01 (39732): Guest Log: -rw-------. 1 atlas atlas      5063 Oct 13 12:48 pilotlog.txt
2025-10-13 14:49:01 (39732): Guest Log: -rw-------. 1 atlas atlas   1968019 Oct 13 12:48 log.46676269._083566.job.log.1
2025-10-13 14:49:01 (39732): Guest Log: -rw-------. 1 atlas atlas       357 Oct 13 12:48 output.list
2025-10-13 14:49:01 (39732): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 13 12:48 runtime_log
2025-10-13 14:49:01 (39732): Guest Log: -rw-------. 1 atlas atlas   2365440 Oct 13 12:48 result.tar.gz
2025-10-13 14:49:01 (39732): Guest Log: -rw-r--r--. 1 atlas atlas      8640 Oct 13 12:48 runtime_log.err
2025-10-13 14:49:01 (39732): Guest Log: -rw-------. 1 atlas atlas       657 Oct 13 12:48 FKaMDmQDES8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYfkNDmZhxhDn.diag
2025-10-13 14:49:01 (39732): Guest Log: Looking for outputfile HITS.46676269._083566.pool.root.1
2025-10-13 14:49:01 (39732): Guest Log: HITS file was successfully produced
2025-10-13 14:49:01 (39732): Guest Log: -rw-------. 1 atlas atlas 188562213 Oct 13 12:47 /home/atlas/RunAtlas/HITS.46676269._083566.pool.root.1
2025-10-13 14:49:02 (39732): Guest Log: Successfully finished the ATLAS job!
2025-10-13 14:49:02 (39732): Guest Log: Copying the results back to the shared directory!
2025-10-13 14:49:02 (39732): Guest Log:  *** Contents of shared directory: ***
2025-10-13 14:49:02 (39732): Guest Log: total 400744
2025-10-13 14:49:02 (39732): Guest Log: -rwxrwxrwx. 1 root root 218828241 Oct 13 08:33 ATLAS.root_0
2025-10-13 14:49:02 (39732): Guest Log: -rwxrwxrwx. 1 root root 188562213 Oct 13  2025 HITS.pool.root.1
2025-10-13 14:49:02 (39732): Guest Log: -rwxrwxrwx. 1 root root      9081 Oct 13 08:33 init_data.xml
2025-10-13 14:49:02 (39732): Guest Log: -rwxrwxrwx. 1 root root    569681 Oct 12 19:56 input.tar.gz
2025-10-13 14:49:02 (39732): Guest Log: -rwxrwxrwx. 1 root root   2365440 Oct 13  2025 result.tar.gz
2025-10-13 14:49:02 (39732): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 12 19:56 start_atlas.sh
2025-10-13 14:49:02 (39732): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-13 14:49:02 (39732): VM Completion File Detected.
2025-10-13 14:49:02 (39732): Powering off VM.
2025-10-13 14:49:03 (39732): Successfully stopped VM.
2025-10-13 14:49:03 (39732): Deregistering VM. (boinc_a610ea7d9e126b58, slot#0)
2025-10-13 14:49:03 (39732): Removing network bandwidth throttle group from VM.
2025-10-13 14:49:03 (39732): Removing VM from VirtualBox.
2025-10-13 14:49:08 (39732): called boinc_finish(0)

</stderr_txt>
]]>

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