Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:57:04 (3341577): wrapper (7.7.26015): starting
07:57:04 (3341577): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 07:57:04] Arguments: --nthreads 3
[2025-10-13 07:57:04] Threads: 3
[2025-10-13 07:57:04] Checking for CVMFS
[2025-10-13 07:57:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 07:57:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 07:57:04] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 07:57:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 07:57:04] 2.9.2.0 3205981 476 58008 151650 0 57 30716494 36864001 0 130560 0 355216 99.990 15980 496 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 07:57:04] CVMFS is ok
[2025-10-13 07:57:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 07:57:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 07:57:04] Further information can be found at the LHC@home message board.
[2025-10-13 07:57:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 07:57:04] Checking for apptainer binary...
[2025-10-13 07:57:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 07:57:04] Running /usr/bin/apptainer --version
[2025-10-13 07:57:04] apptainer version 1.4.1-1.1
[2025-10-13 07:57:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 07:57:04] thA335
[2025-10-13 07:57:04] apptainer works
[2025-10-13 07:57:04] Set ATHENA_PROC_NUMBER=3
[2025-10-13 07:57:04] Set ATHENA_CORE_NUMBER=3
[2025-10-13 07:57:04] Starting ATLAS job with PandaID=6840225602
[2025-10-13 07:57:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 09:31:36]  *** The last 200 lines of the pilot log: ***
[2025-10-13 09:31:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 09:31:36] ANSI_COLOR="0;31"
[2025-10-13 09:31:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 09:31:36] HOME_URL="https://www.centos.org/"
[2025-10-13 09:31:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 09:31:36] 
[2025-10-13 09:31:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 09:31:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 09:31:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 09:31:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 09:31:36] 
[2025-10-13 09:31:36] 2025-10-13 07:31:05,441 | INFO     | ***************************************
[2025-10-13 09:31:36] 2025-10-13 07:31:05,945 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 09:31:36] 2025-10-13 07:31:05,957 | INFO     | sufficient remaining disk space (830873796608 B)
[2025-10-13 09:31:36] 2025-10-13 07:31:05,958 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 09:31:36] 2025-10-13 07:31:05,958 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 09:31:36] 2025-10-13 07:31:05,958 | INFO     | update_server=False
[2025-10-13 09:31:36] 2025-10-13 07:31:05,958 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 09:31:36] 2025-10-13 07:31:05,958 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:31:36] 2025-10-13 07:31:06,204 | INFO     | all payload control threads have been joined
[2025-10-13 09:31:36] 2025-10-13 07:31:06,233 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:31:36] 2025-10-13 07:31:06,234 | INFO     | aborting loop
[2025-10-13 09:31:36] 2025-10-13 07:31:06,855 | INFO     | all data control threads have been joined
[2025-10-13 09:31:36] 2025-10-13 07:31:06,964 | INFO     | [job] retrieve thread has finished
[2025-10-13 09:31:36] 2025-10-13 07:31:06,964 | INFO     | [job] queue monitor thread has finished
[2025-10-13 09:31:36] 2025-10-13 07:31:07,133 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 09:31:36] 2025-10-13 07:31:07,150 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 09:31:36] 2025-10-13 07:31:07,210 | INFO     | [payload] control thread has finished
[2025-10-13 09:31:36] 2025-10-13 07:31:07,239 | INFO     | [job] job monitor thread has finished
[2025-10-13 09:31:36] 2025-10-13 07:31:07,264 | INFO     | all job control threads have been joined
[2025-10-13 09:31:36] 2025-10-13 07:31:07,401 | INFO     | [payload] failed_post thread has finished
[2025-10-13 09:31:36] 2025-10-13 07:31:07,597 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 09:31:36] 2025-10-13 07:31:07,830 | INFO     | [data] copytool_in thread has finished
[2025-10-13 09:31:36] 2025-10-13 07:31:07,861 | INFO     | [data] control thread has finished
[2025-10-13 09:31:36] 2025-10-13 07:31:07,948 | INFO     | [payload] validate_post thread has finished
[2025-10-13 09:31:36] 2025-10-13 07:31:08,240 | INFO     | [job] validate thread has finished
[2025-10-13 09:31:36] 2025-10-13 07:31:08,261 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 09:31:36] 2025-10-13 07:31:08,270 | INFO     | [job] control thread has finished
[2025-10-13 09:31:36] 2025-10-13 07:31:08,294 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 09:31:36] 2025-10-13 07:31:08,950 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 09:31:36] 2025-10-13 07:31:09,156 | INFO     | [data] copytool_out thread has finished
[2025-10-13 09:31:36] 2025-10-13 07:31:12,957 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 09:31:36] 2025-10-13 07:31:25,186 | INFO     | [monitor] cgroup control has ended
[2025-10-13 09:31:36] 2025-10-13 07:31:26,192 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140603769816896)>', '<ExcThread(monitor, started 140602985404160)>']
[2025-10-13 09:31:36] 2025-10-13 07:31:31,218 | INFO     | all workflow threads have been joined
[2025-10-13 09:31:36] 2025-10-13 07:31:31,219 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 09:31:36] 2025-10-13 07:31:31,219 | INFO     | traces error code: 0
[2025-10-13 09:31:36] 2025-10-13 07:31:31,220 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 09:31:36] 2025-10-13 07:31:36,602 | INFO     | PID=3345298 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 09:31:36] 2025-10-13 07:31:36,602 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 09:31:36] 2025-10-13 07:31:36,602 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 09:31:36] 2025-10-13 07:31:36,602 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 09:31:36] 2025-10-13 07:31:36,602 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 09:31:36] 2025-10-13 07:31:36,602 | CRITICAL | thread 'MainThread' is not alive
[2025-10-13 09:31:36] 2025-10-13 07:31:36,602 | INFO     | [monitor] control thread has ended
[2025-10-13 09:31:36] 2025-10-13 07:31:36,649 [wrapper] ==== pilot stdout END ====
[2025-10-13 09:31:36] 2025-10-13 07:31:36,652 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 09:31:36] 2025-10-13 07:31:36,654 [wrapper] pilotpid: 3345298
[2025-10-13 09:31:36] 2025-10-13 07:31:36,657 [wrapper] Pilot exit status: 0
[2025-10-13 09:31:36] 2025-10-13 07:31:36,664 [wrapper] pandaids: 6840225602
[2025-10-13 09:31:36] 2025-10-13 07:31:36,680 [wrapper] cleanup supervisor_pilot 3364325 3345299
[2025-10-13 09:31:36] 2025-10-13 07:31:36,682 [wrapper] Test setup, not cleaning
[2025-10-13 09:31:36] 2025-10-13 07:31:36,685 [wrapper] apfmon messages muted
[2025-10-13 09:31:36] 2025-10-13 07:31:36,687 [wrapper] ==== wrapper stdout END ====
[2025-10-13 09:31:36] 2025-10-13 07:31:36,690 [wrapper] ==== wrapper stderr END ====
[2025-10-13 09:31:36]  *** Error codes and diagnostics ***
[2025-10-13 09:31:36]     "exeErrorCode": 0,
[2025-10-13 09:31:36]     "exeErrorDiag": "",
[2025-10-13 09:31:36]     "pilotErrorCode": 0,
[2025-10-13 09:31:36]     "pilotErrorDiag": "",
[2025-10-13 09:31:36]  *** Listing of results directory ***
[2025-10-13 09:31:36] total 414592
[2025-10-13 09:31:36] -rw-r--r-- 1 boinc boinc    557409 Oct 12 17:00 pilot3.tar.gz
[2025-10-13 09:31:36] -rwx------ 1 boinc boinc     36292 Oct 12 17:50 runpilot2-wrapper.sh
[2025-10-13 09:31:36] -rw-r--r-- 1 boinc boinc      5112 Oct 12 17:50 queuedata.json
[2025-10-13 09:31:36] -rw-r--r-- 1 boinc boinc       100 Oct 13 07:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 09:31:36] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 07:57 run_atlas
[2025-10-13 09:31:36] -rw-r--r-- 1 boinc boinc       105 Oct 13 07:57 job.xml
[2025-10-13 09:31:36] -rw-r--r-- 2 boinc boinc 223275661 Oct 13 07:57 EVNT.46676267._004589.pool.root.1
[2025-10-13 09:31:36] -rw-r--r-- 2 boinc boinc    569677 Oct 13 07:57 input.tar.gz
[2025-10-13 09:31:36] -rw-r--r-- 2 boinc boinc     15120 Oct 13 07:57 start_atlas.sh
[2025-10-13 09:31:36] drwxrwx--x 2 boinc boinc      4096 Oct 13 07:57 shared
[2025-10-13 09:31:36] -rw-r--r-- 1 boinc boinc         0 Oct 13 07:57 boinc_setup_complete
[2025-10-13 09:31:36] -rw-r--r-- 1 boinc boinc      6195 Oct 13 07:57 init_data.xml
[2025-10-13 09:31:36] -rw-r--r-- 1 boinc boinc         0 Oct 13 07:57 boinc_lockfile
[2025-10-13 09:31:36] -rw-r--r-- 1 boinc boinc      2549 Oct 13 07:57 pandaJob.out
[2025-10-13 09:31:36] -rw------- 1 boinc boinc    973230 Oct 13 07:57 agis_schedconf.cvmfs.json
[2025-10-13 09:31:36] -rw------- 1 boinc boinc   1560580 Oct 13 07:57 agis_ddmendpoints.agis.ALL.json
[2025-10-13 09:31:36] drwx------ 5 boinc boinc      4096 Oct 13 07:57 pilot3
[2025-10-13 09:31:36] -rw------- 1 boinc boinc 195224233 Oct 13 09:30 HITS.46676269._082669.pool.root.1
[2025-10-13 09:31:36] -rw-r--r-- 1 boinc boinc       529 Oct 13 09:30 boinc_task_state.xml
[2025-10-13 09:31:36] -rw------- 1 boinc boinc        95 Oct 13 09:30 pilot_heartbeat.json
[2025-10-13 09:31:36] -rw------- 1 boinc boinc      1018 Oct 13 09:30 memory_monitor_summary.json
[2025-10-13 09:31:36] -rw------- 1 boinc boinc    254963 Oct 13 09:30 log.46676269._082669.job.log.tgz.1
[2025-10-13 09:31:36] -rw------- 1 boinc boinc      7759 Oct 13 09:31 heartbeat.json
[2025-10-13 09:31:36] -rw-r--r-- 1 boinc boinc      8192 Oct 13 09:31 boinc_mmap_file
[2025-10-13 09:31:36] -rw-r--r-- 1 boinc boinc        27 Oct 13 09:31 wrapper_checkpoint.txt
[2025-10-13 09:31:36] -rw------- 1 boinc boinc       817 Oct 13 09:31 pilotlog.txt
[2025-10-13 09:31:36] -rw------- 1 boinc boinc    821181 Oct 13 09:31 log.46676269._082669.job.log.1
[2025-10-13 09:31:36] -rw------- 1 boinc boinc       357 Oct 13 09:31 output.list
[2025-10-13 09:31:36] -rw-r--r-- 1 boinc boinc       620 Oct 13 09:31 runtime_log
[2025-10-13 09:31:36] -rw------- 1 boinc boinc   1095680 Oct 13 09:31 result.tar.gz
[2025-10-13 09:31:36] -rw-r--r-- 1 boinc boinc      8777 Oct 13 09:31 runtime_log.err
[2025-10-13 09:31:36] -rw------- 1 boinc boinc       658 Oct 13 09:31 kCLODmVWDS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmqLUMDm09roEn.diag
[2025-10-13 09:31:36] -rw-r--r-- 1 boinc boinc      8597 Oct 13 09:31 stderr.txt
[2025-10-13 09:31:36] HITS file was successfully produced:
[2025-10-13 09:31:36] -rw------- 1 boinc boinc 195224233 Oct 13 09:30 shared/HITS.pool.root.1
[2025-10-13 09:31:36]  *** Contents of shared directory: ***
[2025-10-13 09:31:36] total 410352
[2025-10-13 09:31:36] -rw-r--r-- 2 boinc boinc 223275661 Oct 13 07:57 ATLAS.root_0
[2025-10-13 09:31:36] -rw-r--r-- 2 boinc boinc    569677 Oct 13 07:57 input.tar.gz
[2025-10-13 09:31:36] -rw-r--r-- 2 boinc boinc     15120 Oct 13 07:57 start_atlas.sh
[2025-10-13 09:31:36] -rw------- 1 boinc boinc 195224233 Oct 13 09:30 HITS.pool.root.1
[2025-10-13 09:31:36] -rw------- 1 boinc boinc   1095680 Oct 13 09:31 result.tar.gz
09:31:38 (3341577): run_atlas exited; CPU time 16119.579720
09:31:38 (3341577): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN