Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:14:00 (3956033): wrapper (7.7.26015): starting
16:14:00 (3956033): wrapper: running run_atlas (--nthreads 10)
[2025-10-12 16:14:00] Arguments: --nthreads 10
[2025-10-12 16:14:00] Threads: 10
[2025-10-12 16:14:00] Checking for CVMFS
[2025-10-12 16:14:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:14:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:14:01] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:14:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:14:02] 2.13.2.0 8406 36971 97636 151635 1 495 25719240 40960001 23634 16776704 0 232176526 99.854 81852940 49341 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 16:14:02] CVMFS is ok
[2025-10-12 16:14:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 16:14:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 16:14:02] Further information can be found at the LHC@home message board.
[2025-10-12 16:14:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:14:02] Checking for apptainer binary...
[2025-10-12 16:14:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 16:14:02] Running /usr/bin/apptainer --version
[2025-10-12 16:14:02] apptainer version 1.4.3-1.el9
[2025-10-12 16:14:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:14:02] c-208-37.aglt2.org
[2025-10-12 16:14:02] apptainer works
[2025-10-12 16:14:02] Set ATHENA_PROC_NUMBER=10
[2025-10-12 16:14:02] Set ATHENA_CORE_NUMBER=10
[2025-10-12 16:14:02] Starting ATLAS job with PandaID=6840392449
[2025-10-12 16:14:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:45:34]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:45:34] 2025-10-12 21:43:59,687 | INFO     | PID=3964459 has CPU usage=9.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 17:45:34] 2025-10-12 21:43:59,687 | INFO     | .. there are 23 such processes running
[2025-10-12 17:45:34] 2025-10-12 21:44:00,379 | INFO     | monitor loop #345: job 0:6840392449 is in state 'finished'
[2025-10-12 17:45:34] 2025-10-12 21:44:00,379 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:45:34] 2025-10-12 21:44:00,688 | INFO     | time since job start (5384s) is within the limit (172800.0s)
[2025-10-12 17:45:34] 2025-10-12 21:44:02,694 | INFO     | time since job start (5386s) is within the limit (172800.0s)
[2025-10-12 17:45:34] 2025-10-12 21:44:02,884 | INFO     | monitor loop #346: job 0:6840392449 is in state 'finished'
[2025-10-12 17:45:34] 2025-10-12 21:44:02,884 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:45:34] 2025-10-12 21:44:04,701 | INFO     | time since job start (5388s) is within the limit (172800.0s)
[2025-10-12 17:45:34] 2025-10-12 21:44:05,390 | INFO     | monitor loop #347: job 0:6840392449 is in state 'finished'
[2025-10-12 17:45:34] 2025-10-12 21:44:05,390 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:45:34] 2025-10-12 21:44:06,722 | INFO     | time since job start (5390s) is within the limit (172800.0s)
[2025-10-12 17:45:34] 2025-10-12 21:44:07,912 | INFO     | monitor loop #348: job 0:6840392449 is in state 'finished'
[2025-10-12 17:45:34] 2025-10-12 21:44:07,912 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:45:34] 2025-10-12 21:44:08,729 | INFO     | time since job start (5392s) is within the limit (172800.0s)
[2025-10-12 17:45:34] 2025-10-12 21:44:10,419 | INFO     | monitor loop #349: job 0:6840392449 is in state 'finished'
[2025-10-12 17:45:34] 2025-10-12 21:44:10,419 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:45:34] 2025-10-12 21:44:10,736 | INFO     | time since job start (5394s) is within the limit (172800.0s)
[2025-10-12 17:45:34] 2025-10-12 21:44:12,743 | INFO     | time since job start (5396s) is within the limit (172800.0s)
[2025-10-12 17:45:34] 2025-10-12 21:44:12,924 | INFO     | monitor loop #350: job 0:6840392449 is in state 'finished'
[2025-10-12 17:45:34] 2025-10-12 21:44:12,924 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:45:34] 2025-10-12 21:44:14,458 [wrapper] supervise_pilot (15 min periods counter: 7)
[2025-10-12 17:45:34] 2025-10-12 21:44:14,750 | INFO     | time since job start (5398s) is within the limit (172800.0s)
[2025-10-12 17:45:34] 2025-10-12 21:44:15,429 | INFO     | monitor loop #351: job 0:6840392449 is in state 'finished'
[2025-10-12 17:45:34] 2025-10-12 21:44:15,429 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:45:34] 2025-10-12 21:44:16,763 | INFO     | time since job start (5400s) is within the limit (172800.0s)
[2025-10-12 17:45:34] 2025-10-12 21:44:17,934 | INFO     | monitor loop #352: job 0:6840392449 is in state 'finished'
[2025-10-12 17:45:34] 2025-10-12 21:44:17,934 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:45:34] 2025-10-12 21:44:18,788 | INFO     | time since job start (5402s) is within the limit (172800.0s)
[2025-10-12 17:45:34] 2025-10-12 21:44:20,445 | INFO     | monitor loop #353: job 0:6840392449 is in state 'finished'
[2025-10-12 17:45:34] 2025-10-12 21:44:20,446 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:45:34] 2025-10-12 21:44:20,807 | INFO     | time since job start (5404s) is within the limit (172800.0s)
[2025-10-12 17:45:34] 2025-10-12 21:44:22,875 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 17:45:34] 2025-10-12 21:44:22,909 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3696.4458906250006
[2025-10-12 17:45:34] 2025-10-12 21:44:22,980 | INFO     | monitor loop #354: job 0:6840392449 is in state 'finished'
[2025-10-12 17:45:34] 2025-10-12 21:44:22,980 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:45:34] 2025-10-12 21:44:23,004 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6840392449/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:45:34] 2025-10-12 21:44:23,004 | INFO     | extracted standard info from prmon json
[2025-10-12 17:45:34] 2025-10-12 21:44:23,005 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 17:45:34] 2025-10-12 21:44:23,005 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 17:45:34] 2025-10-12 21:44:23,005 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 17:45:34] 2025-10-12 21:44:23,005 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 17:45:34] 2025-10-12 21:44:23,006 | INFO     | fitting pss+swap vs Time
[2025-10-12 17:45:34] 2025-10-12 21:44:23,006 | INFO     | sum of square deviations: 164788579.2098765
[2025-10-12 17:45:34] 2025-10-12 21:44:23,006 | INFO     | sum of deviations: -3894977668.1851854
[2025-10-12 17:45:34] 2025-10-12 21:44:23,006 | INFO     | mean x: 1760302835.0987654
[2025-10-12 17:45:34] 2025-10-12 21:44:23,007 | INFO     | mean y: 2636141.1481481483
[2025-10-12 17:45:34] 2025-10-12 21:44:23,007 | INFO     | -- intersect: 41609525798.352196
[2025-10-12 17:45:34] 2025-10-12 21:44:23,007 | INFO     | intersect: 41609525798.352196
[2025-10-12 17:45:34] 2025-10-12 21:44:23,007 | INFO     | chi2: 0.05201336322940223
[2025-10-12 17:45:34] 2025-10-12 21:44:23,007 | INFO     | -- intersect: 41609525798.352196
[2025-10-12 17:45:34] 2025-10-12 21:44:23,007 | INFO     | current memory leak: -23.64 B/s (using 81 data points, chi2=0.05)
[2025-10-12 17:45:34] 2025-10-12 21:44:23,007 | INFO     | could have reported an average CPU frequency of 3697 MHz (6 samples)
[2025-10-12 17:45:34] 2025-10-12 21:44:23,024 | INFO     | ..............................
[2025-10-12 17:45:34] 2025-10-12 21:44:23,024 | INFO     | . Timing measurements:
[2025-10-12 17:45:34] 2025-10-12 21:44:23,024 | INFO     | . get job = 0 s
[2025-10-12 17:45:34] 2025-10-12 21:44:23,024 | INFO     | . initial setup = 2 s
[2025-10-12 17:45:34] 2025-10-12 21:44:23,025 | INFO     | . payload setup = 8 s
[2025-10-12 17:45:34] 2025-10-12 21:44:23,025 | INFO     | . stage-in = 0 s
[2025-10-12 17:45:34] 2025-10-12 21:44:23,025 | INFO     | . payload execution = 5337 s
[2025-10-12 17:45:34] 2025-10-12 21:44:23,025 | INFO     | . stage-out = 2 s
[2025-10-12 17:45:34] 2025-10-12 21:44:23,025 | INFO     | . log creation = 0 s
[2025-10-12 17:45:34] 2025-10-12 21:44:23,025 | INFO     | ..............................
[2025-10-12 17:45:34] 2025-10-12 21:44:23,586 | INFO     | 
[2025-10-12 17:45:34] 2025-10-12 21:44:23,588 | INFO     | job summary report
[2025-10-12 17:45:34] 2025-10-12 21:44:23,588 | INFO     | --------------------------------------------------
[2025-10-12 17:45:34] 2025-10-12 21:44:23,588 | INFO     | PanDA job id: 6840392449
[2025-10-12 17:45:34] 2025-10-12 21:44:23,588 | INFO     | task id: 46676269
[2025-10-12 17:45:34] 2025-10-12 21:44:23,588 | INFO     | errors: (none)
[2025-10-12 17:45:34] 2025-10-12 21:44:23,588 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 17:45:34] 2025-10-12 21:44:23,588 | INFO     | pilot state: finished 
[2025-10-12 17:45:34] 2025-10-12 21:44:23,588 | INFO     | transexitcode: 0
[2025-10-12 17:45:34] 2025-10-12 21:44:23,588 | INFO     | exeerrorcode: 0
[2025-10-12 17:45:34] 2025-10-12 21:44:23,588 | INFO     | exeerrordiag: 
[2025-10-12 17:45:34] 2025-10-12 21:44:23,588 | INFO     | exitcode: 0
[2025-10-12 17:45:34] 2025-10-12 21:44:23,588 | INFO     | exitmsg: OK
[2025-10-12 17:45:34] 2025-10-12 21:44:23,588 | INFO     | cpuconsumptiontime: 23466 s
[2025-10-12 17:45:34] 2025-10-12 21:44:23,588 | INFO     | nevents: 400
[2025-10-12 17:45:34] 2025-10-12 21:44:23,588 | INFO     | neventsw: 0
[2025-10-12 17:45:34] 2025-10-12 21:44:23,588 | INFO     | pid: 3974722
[2025-10-12 17:45:34] 2025-10-12 21:44:23,588 | INFO     | pgrp: 3974722
[2025-10-12 17:45:34] 2025-10-12 21:44:23,588 | INFO     | corecount: 10
[2025-10-12 17:45:34] 2025-10-12 21:44:23,588 | INFO     | event service: False
[2025-10-12 17:45:34] 2025-10-12 21:44:23,588 | INFO     | sizes: {0: 2348857, 6: 2349119, 11: 2349147, 5351: 2375716, 5354: 2384714, 5356: 2384770, 5388: 2385092}
[2025-10-12 17:45:34] 2025-10-12 21:44:23,588 | INFO     | --------------------------------------------------
[2025-10-12 17:45:34] 2025-10-12 21:44:23,588 | INFO     | 
[2025-10-12 17:45:34] 2025-10-12 21:44:23,588 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 17:45:34] 2025-10-12 21:44:23,767 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 17:45:34] 2025-10-12 21:44:23,768 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 17:45:34] 2025-10-12 21:44:23,768 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 17:45:34] 2025-10-12 21:44:23,768 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 17:45:34] 2025-10-12 21:44:23,768 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 17:45:34] 2025-10-12 21:44:23,768 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 17:45:34] 2025-10-12 21:44:23,768 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 17:45:34] 2025-10-12 21:44:23,768 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 17:45:34] 2025-10-12 21:44:23,768 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 17:45:34] 2025-10-12 21:44:23,768 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 17:45:34] 2025-10-12 21:44:23,768 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 17:45:34] 2025-10-12 21:44:23,768 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 17:45:34] 2025-10-12 21:44:23,768 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 17:45:34] 2025-10-12 21:44:23,768 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 17:45:34] 2025-10-12 21:44:23,768 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 17:45:34] 2025-10-12 21:44:23,768 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 17:45:34] 2025-10-12 21:44:23,768 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 17:45:34] 2025-10-12 21:44:23,768 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 17:45:34] 2025-10-12 21:44:23,768 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 17:45:34] 2025-10-12 21:44:23,768 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 17:45:34] 2025-10-12 21:44:23,768 | INFO     | job 6840392449 has completed (purged errors)
[2025-10-12 17:45:34] 2025-10-12 21:44:23,768 | INFO     | overall cleanup function is called
[2025-10-12 17:45:34] 2025-10-12 21:44:24,325 | INFO     | PID=3964459 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 17:45:34] 2025-10-12 21:44:24,325 | INFO     | .. there are 23 such processes running
[2025-10-12 17:45:34] 2025-10-12 21:44:24,776 | INFO     | --- collectZombieJob: --- 10, [3974722]
[2025-10-12 17:45:34] 2025-10-12 21:44:24,776 | INFO     | zombie collector waiting for pid 3974722
[2025-10-12 17:45:34] 2025-10-12 21:44:24,777 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 17:45:34] 2025-10-12 21:44:24,777 | INFO     | collected zombie processes
[2025-10-12 17:45:34] 2025-10-12 21:44:24,777 | INFO     | will attempt to kill all subprocesses of pid=3974722
[2025-10-12 17:45:34] 2025-10-12 21:44:26,154 | INFO     | process IDs to be killed: [3974722] (in reverse order)
[2025-10-12 17:45:34] 2025-10-12 21:44:26,423 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 17:45:34] 2025-10-12 21:44:26,423 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 17:45:34] 2025-10-12 21:44:26,443 | INFO     | did not find any defunct processes belonging to 3974722
[2025-10-12 17:45:34] 2025-10-12 21:44:26,461 | INFO     | did not find any defunct processes belonging to 3974722
[2025-10-12 17:45:34] 2025-10-12 21:44:26,462 | INFO     | ready for new job
[2025-10-12 17:45:34] 2025-10-12 21:44:26,462 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 17:45:34] 2025-10-12 21:44:26,463 | INFO     | ***************************************
[2025-10-12 17:45:34] 2025-10-12 21:44:26,463 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:45:34] 2025-10-12 21:44:26,463 | INFO     | ***************************************
[2025-10-12 17:45:34] 2025-10-12 21:44:26,463 | INFO     | 
[2025-10-12 17:45:34] 2025-10-12 21:44:26,468 | INFO     | architecture information:
[2025-10-12 17:45:34] 2025-10-12 21:44:26,468 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:45:34] 2025-10-12 21:44:26,565 | INFO     | cat /etc/os-release:
[2025-10-12 17:45:34] NAME="CentOS Linux"
[2025-10-12 17:45:34] VERSION="7 (Core)"
[2025-10-12 17:45:34] ID="centos"
[2025-10-12 17:45:34] ID_LIKE="rhel fedora"
[2025-10-12 17:45:34] VERSION_ID="7"
[2025-10-12 17:45:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:45:34] ANSI_COLOR="0;31"
[2025-10-12 17:45:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:45:34] HOME_URL="https://www.centos.org/"
[2025-10-12 17:45:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:45:34] 
[2025-10-12 17:45:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:45:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:45:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:45:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:45:34] 
[2025-10-12 17:45:34] 2025-10-12 21:44:26,566 | INFO     | ***************************************
[2025-10-12 17:45:34] 2025-10-12 21:44:27,069 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 17:45:34] 2025-10-12 21:44:27,172 | INFO     | sufficient remaining disk space (169554739200 B)
[2025-10-12 17:45:34] 2025-10-12 21:44:27,172 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:45:34] 2025-10-12 21:44:27,172 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:45:34] 2025-10-12 21:44:27,172 | INFO     | update_server=False
[2025-10-12 17:45:34] 2025-10-12 21:44:27,172 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:45:34] 2025-10-12 21:44:27,172 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:45:34] 2025-10-12 21:44:27,172 | INFO     | aborting loop
[2025-10-12 17:45:34] 2025-10-12 21:44:27,454 | INFO     | all payload control threads have been joined
[2025-10-12 17:45:34] 2025-10-12 21:44:27,455 | INFO     | all job control threads have been joined
[2025-10-12 17:45:34] 2025-10-12 21:44:27,859 | INFO     | all data control threads have been joined
[2025-10-12 17:45:34] 2025-10-12 21:44:28,176 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:45:34] 2025-10-12 21:44:28,182 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:45:34] 2025-10-12 21:44:28,363 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:45:34] 2025-10-12 21:44:28,391 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:45:34] 2025-10-12 21:44:28,453 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:45:34] 2025-10-12 21:44:28,464 | INFO     | [payload] control thread has finished
[2025-10-12 17:45:34] 2025-10-12 21:44:28,465 | INFO     | [job] control thread has finished
[2025-10-12 17:45:34] 2025-10-12 21:44:28,589 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:45:34] 2025-10-12 21:44:28,605 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:45:34] 2025-10-12 21:44:28,865 | INFO     | [data] control thread has finished
[2025-10-12 17:45:34] 2025-10-12 21:44:29,340 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:45:34] 2025-10-12 21:44:29,360 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:45:34] 2025-10-12 21:44:29,392 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:45:34] 2025-10-12 21:44:29,393 | INFO     | [job] validate thread has finished
[2025-10-12 17:45:34] 2025-10-12 21:44:29,519 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:45:34] 2025-10-12 21:44:29,611 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:45:34] 2025-10-12 21:44:29,710 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:45:34] 2025-10-12 21:44:30,598 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:45:34] 2025-10-12 21:44:33,720 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:45:34] 2025-10-12 21:44:58,073 | INFO     | PID=3964459 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 17:45:34] 2025-10-12 21:44:58,073 | INFO     | .. there are 23 such processes running
[2025-10-12 17:45:34] 2025-10-12 21:44:58,091 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:45:34] 2025-10-12 21:44:58,092 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:45:34] 2025-10-12 21:44:58,092 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:45:34] 2025-10-12 21:45:25,924 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:45:34] 2025-10-12 21:45:27,325 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140069006468928)>', '<ExcThread(monitor, started 140068505233152)>']
[2025-10-12 17:45:34] 2025-10-12 21:45:28,282 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:45:34] 2025-10-12 21:45:28,282 | INFO     | [monitor] control thread has ended
[2025-10-12 17:45:34] 2025-10-12 21:45:32,351 | INFO     | all workflow threads have been joined
[2025-10-12 17:45:34] 2025-10-12 21:45:32,351 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:45:34] 2025-10-12 21:45:32,352 | INFO     | traces error code: 0
[2025-10-12 17:45:34] 2025-10-12 21:45:32,352 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:45:34] 2025-10-12 21:45:33,218 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:45:34] 2025-10-12 21:45:33,257 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:45:34] 2025-10-12 21:45:33,273 [wrapper] pilotpid: 3964459
[2025-10-12 17:45:34] 2025-10-12 21:45:33,291 [wrapper] Pilot exit status: 0
[2025-10-12 17:45:34] 2025-10-12 21:45:33,386 [wrapper] pandaids: 6840392449
[2025-10-12 17:45:34] 2025-10-12 21:45:33,714 [wrapper] cleanup supervisor_pilot  112988 3964460
[2025-10-12 17:45:34] 2025-10-12 21:45:33,725 [wrapper] Test setup, not cleaning
[2025-10-12 17:45:34] 2025-10-12 21:45:33,736 [wrapper] apfmon messages muted
[2025-10-12 17:45:34] 2025-10-12 21:45:33,743 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:45:34] 2025-10-12 21:45:33,776 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:45:34]  *** Error codes and diagnostics ***
[2025-10-12 17:45:34]     "exeErrorCode": 0,
[2025-10-12 17:45:34]     "exeErrorDiag": "",
[2025-10-12 17:45:34]     "pilotErrorCode": 0,
[2025-10-12 17:45:34]     "pilotErrorDiag": "",
[2025-10-12 17:45:34]  *** Listing of results directory ***
[2025-10-12 17:45:34] total 414376
[2025-10-12 17:45:34] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 12:42 pilot3.tar.gz
[2025-10-12 17:45:34] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 12:47 queuedata.json
[2025-10-12 17:45:34] -rwx------. 1 boincer umatlas     36292 Oct 12 12:47 runpilot2-wrapper.sh
[2025-10-12 17:45:34] -rw-r--r--. 1 boincer umatlas       100 Oct 12 16:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:45:34] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 16:14 run_atlas
[2025-10-12 17:45:34] -rw-r--r--. 1 boincer umatlas       105 Oct 12 16:14 job.xml
[2025-10-12 17:45:34] -rw-r--r--. 2 boincer umatlas 221060547 Oct 12 16:14 EVNT.46676267._004783.pool.root.1
[2025-10-12 17:45:34] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 16:14 start_atlas.sh
[2025-10-12 17:45:34] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 16:14 shared
[2025-10-12 17:45:34] -rw-r--r--. 2 boincer umatlas    569685 Oct 12 16:14 input.tar.gz
[2025-10-12 17:45:34] -rw-r--r--. 1 boincer umatlas         0 Oct 12 16:14 boinc_lockfile
[2025-10-12 17:45:34] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 16:14 pandaJob.out
[2025-10-12 17:45:34] -rw-------. 1 boincer umatlas    975536 Oct 12 16:14 agis_schedconf.cvmfs.json
[2025-10-12 17:45:34] -rw-------. 1 boincer umatlas   1560580 Oct 12 16:14 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:45:34] drwx------. 5 boincer umatlas      4096 Oct 12 16:14 pilot3
[2025-10-12 17:45:34] -rw-r--r--. 1 boincer umatlas      7173 Oct 12 17:40 init_data.xml
[2025-10-12 17:45:34] -rw-------. 1 boincer umatlas 197138475 Oct 12 17:42 HITS.46676269._083910.pool.root.1
[2025-10-12 17:45:34] -rw-r--r--. 1 boincer umatlas       530 Oct 12 17:43 boinc_task_state.xml
[2025-10-12 17:45:34] -rw-------. 1 boincer umatlas      1048 Oct 12 17:43 memory_monitor_summary.json
[2025-10-12 17:45:34] -rw-------. 1 boincer umatlas    376971 Oct 12 17:43 log.46676269._083910.job.log.tgz.1
[2025-10-12 17:45:34] -rw-------. 1 boincer umatlas      7805 Oct 12 17:44 heartbeat.json
[2025-10-12 17:45:34] -rw-------. 1 boincer umatlas        95 Oct 12 17:44 pilot_heartbeat.json
[2025-10-12 17:45:34] -rw-r--r--. 1 boincer umatlas        27 Oct 12 17:45 wrapper_checkpoint.txt
[2025-10-12 17:45:34] -rw-------. 1 boincer umatlas      4825 Oct 12 17:45 pilotlog.txt
[2025-10-12 17:45:34] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 17:45 boinc_mmap_file
[2025-10-12 17:45:34] -rw-------. 1 boincer umatlas    729471 Oct 12 17:45 log.46676269._083910.job.log.1
[2025-10-12 17:45:34] -rw-------. 1 boincer umatlas       357 Oct 12 17:45 output.list
[2025-10-12 17:45:34] -rw-r--r--. 1 boincer umatlas       620 Oct 12 17:45 runtime_log
[2025-10-12 17:45:34] -rw-------. 1 boincer umatlas   1126400 Oct 12 17:45 result.tar.gz
[2025-10-12 17:45:34] -rw-r--r--. 1 boincer umatlas      8705 Oct 12 17:45 runtime_log.err
[2025-10-12 17:45:34] -rw-------. 1 boincer umatlas       657 Oct 12 17:45 PWrNDmLPES8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbikNDmausGTo.diag
[2025-10-12 17:45:34] -rw-r--r--. 1 boincer umatlas     22375 Oct 12 17:45 stderr.txt
[2025-10-12 17:45:34] HITS file was successfully produced:
[2025-10-12 17:45:34] -rw-------. 1 boincer umatlas 197138475 Oct 12 17:42 shared/HITS.pool.root.1
[2025-10-12 17:45:34]  *** Contents of shared directory: ***
[2025-10-12 17:45:34] total 410084
[2025-10-12 17:45:34] -rw-r--r--. 2 boincer umatlas 221060547 Oct 12 16:14 ATLAS.root_0
[2025-10-12 17:45:34] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 16:14 start_atlas.sh
[2025-10-12 17:45:34] -rw-r--r--. 2 boincer umatlas    569685 Oct 12 16:14 input.tar.gz
[2025-10-12 17:45:34] -rw-------. 1 boincer umatlas 197138475 Oct 12 17:42 HITS.pool.root.1
[2025-10-12 17:45:34] -rw-------. 1 boincer umatlas   1126400 Oct 12 17:45 result.tar.gz
17:45:35 (3956033): run_atlas exited; CPU time 23591.319990
17:45:35 (3956033): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN