Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:55:32 (16717): wrapper (7.7.26015): starting
15:55:32 (16717): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 15:55:32] Arguments: --nthreads 12
[2025-10-12 15:55:32] Threads: 12
[2025-10-12 15:55:32] Checking for CVMFS
[2025-10-12 15:55:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 15:55:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 15:55:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 15:55:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 15:55:33] 2.11.2.0 2916 223283 99928 151635 3 56 19695605 20275200 1 130560 1 108714601 99.984 13426728 12516 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 15:55:33] CVMFS is ok
[2025-10-12 15:55:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 15:55:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 15:55:33] Further information can be found at the LHC@home message board.
[2025-10-12 15:55:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 15:55:33] Checking for apptainer binary...
[2025-10-12 15:55:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 15:55:33] Running /usr/bin/apptainer --version
[2025-10-12 15:55:33] apptainer version 1.3.2-1.el7
[2025-10-12 15:55:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 15:55:34] c-205-23.aglt2.org
[2025-10-12 15:55:34] apptainer works
[2025-10-12 15:55:34] Set ATHENA_PROC_NUMBER=12
[2025-10-12 15:55:34] Set ATHENA_CORE_NUMBER=12
[2025-10-12 15:55:34] Starting ATLAS job with PandaID=6840225533
[2025-10-12 15:55:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:10:03]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:10:03]  status=None
[2025-10-12 17:10:03]  status_code=0
[2025-10-12 17:10:03]  storage_token=
[2025-10-12 17:10:03]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840225533/log.46676269._082600.job.log.tgz.1
[2025-10-12 17:10:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/93/b9/log.46676269._082600.job.log.tgz.1
[2025-10-12 17:10:03]  workdir=None
[2025-10-12 17:10:03] ]
[2025-10-12 17:10:03] 2025-10-12 21:08:50,649 | INFO     | transferring file log.46676269._082600.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840225533/log.46676269._082600.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 17:10:03] 2025-10-12 21:08:50,649 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840225533/log.46676269._082600.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._082600.job
[2025-10-12 17:10:03] 2025-10-12 21:08:50,672 | INFO     | adding to output.list: log.46676269._082600.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/93/b9/log.46676269._082600.job.log.tg
[2025-10-12 17:10:03] 2025-10-12 21:08:50,672 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 17:10:03] 2025-10-12 21:08:50,673 | INFO     | summary of transferred files:
[2025-10-12 17:10:03] 2025-10-12 21:08:50,673 | INFO     |  -- lfn=log.46676269._082600.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 17:10:03] 2025-10-12 21:08:50,673 | INFO     | stage-out finished correctly
[2025-10-12 17:10:03] 2025-10-12 21:08:50,787 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 17:10:03] 2025-10-12 21:08:51,714 | WARNING  | process 26906 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 17:10:03] 2025-10-12 21:08:51,714 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840225533/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:10:03] 2025-10-12 21:08:51,803 | INFO     | number of running child processes to parent process 26906: 1
[2025-10-12 17:10:03] 2025-10-12 21:08:51,803 | INFO     | maximum number of monitored processes: 6
[2025-10-12 17:10:03] 2025-10-12 21:08:51,804 | INFO     | job 6840225533 has state=finished
[2025-10-12 17:10:03] 2025-10-12 21:08:51,804 | INFO     | preparing for final server update for job 6840225533 in state='finished'
[2025-10-12 17:10:03] 2025-10-12 21:08:51,928 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-12 17:10:03] 2025-10-12 21:08:51,928 | INFO     | this job has now completed (state=finished)
[2025-10-12 17:10:03] 2025-10-12 21:08:51,928 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 17:10:03] 2025-10-12 21:08:51,929 | INFO     | log transfer has been attempted: DONE
[2025-10-12 17:10:03] 2025-10-12 21:08:51,929 | INFO     | job 6840225533 has finished - writing final server update
[2025-10-12 17:10:03] 2025-10-12 21:08:51,929 | INFO     | total number of processed events: 400 (read)
[2025-10-12 17:10:03] 2025-10-12 21:08:51,930 | INFO     | executing command: lscpu
[2025-10-12 17:10:03] 2025-10-12 21:08:51,954 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 17:10:03] 2025-10-12 21:08:52,232 | INFO     | time since job start (4383s) is within the limit (172800.0s)
[2025-10-12 17:10:03] 2025-10-12 21:08:54,238 | INFO     | time since job start (4385s) is within the limit (172800.0s)
[2025-10-12 17:10:03] 2025-10-12 21:08:54,306 | INFO     | monitor loop #326: job 0:6840225533 is in state 'finished'
[2025-10-12 17:10:03] 2025-10-12 21:08:54,307 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:10:03] 2025-10-12 21:08:56,244 | INFO     | time since job start (4387s) is within the limit (172800.0s)
[2025-10-12 17:10:03] 2025-10-12 21:08:56,685 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 17:10:03] 2025-10-12 21:08:56,689 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-10-12 17:10:03] 2025-10-12 21:08:56,691 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840225533/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:10:03] 2025-10-12 21:08:56,691 | INFO     | extracted standard info from prmon json
[2025-10-12 17:10:03] 2025-10-12 21:08:56,691 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 17:10:03] 2025-10-12 21:08:56,692 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 17:10:03] 2025-10-12 21:08:56,692 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 17:10:03] 2025-10-12 21:08:56,692 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 17:10:03] 2025-10-12 21:08:56,694 | INFO     | fitting pss+swap vs Time
[2025-10-12 17:10:03] 2025-10-12 21:08:56,694 | INFO     | sum of square deviations: 85136480.0
[2025-10-12 17:10:03] 2025-10-12 21:08:56,694 | INFO     | sum of deviations: -5106722970.0
[2025-10-12 17:10:03] 2025-10-12 21:08:56,694 | INFO     | mean x: 1760301235.0
[2025-10-12 17:10:03] 2025-10-12 21:08:56,694 | INFO     | mean y: 2740909.707692308
[2025-10-12 17:10:03] 2025-10-12 21:08:56,695 | INFO     | -- intersect: 105590507175.04855
[2025-10-12 17:10:03] 2025-10-12 21:08:56,695 | INFO     | intersect: 105590507175.04855
[2025-10-12 17:10:03] 2025-10-12 21:08:56,695 | INFO     | chi2: 0.05323964127768506
[2025-10-12 17:10:03] 2025-10-12 21:08:56,695 | INFO     | -- intersect: 105590507175.04855
[2025-10-12 17:10:03] 2025-10-12 21:08:56,695 | INFO     | current memory leak: -59.98 B/s (using 65 data points, chi2=0.05)
[2025-10-12 17:10:03] 2025-10-12 21:08:56,696 | INFO     | could have reported an average CPU frequency of 2047 MHz (6 samples)
[2025-10-12 17:10:03] 2025-10-12 21:08:56,696 | INFO     | ..............................
[2025-10-12 17:10:03] 2025-10-12 21:08:56,696 | INFO     | . Timing measurements:
[2025-10-12 17:10:03] 2025-10-12 21:08:56,696 | INFO     | . get job = 0 s
[2025-10-12 17:10:03] 2025-10-12 21:08:56,696 | INFO     | . initial setup = 2 s
[2025-10-12 17:10:03] 2025-10-12 21:08:56,696 | INFO     | . payload setup = 7 s
[2025-10-12 17:10:03] 2025-10-12 21:08:56,696 | INFO     | . stage-in = 0 s
[2025-10-12 17:10:03] 2025-10-12 21:08:56,696 | INFO     | . payload execution = 4353 s
[2025-10-12 17:10:03] 2025-10-12 21:08:56,696 | INFO     | . stage-out = 0 s
[2025-10-12 17:10:03] 2025-10-12 21:08:56,697 | INFO     | . log creation = 0 s
[2025-10-12 17:10:03] 2025-10-12 21:08:56,697 | INFO     | ..............................
[2025-10-12 17:10:03] 2025-10-12 21:08:57,114 | INFO     | 
[2025-10-12 17:10:03] 2025-10-12 21:08:57,115 | INFO     | job summary report
[2025-10-12 17:10:03] 2025-10-12 21:08:57,122 | INFO     | --------------------------------------------------
[2025-10-12 17:10:03] 2025-10-12 21:08:57,122 | INFO     | PanDA job id: 6840225533
[2025-10-12 17:10:03] 2025-10-12 21:08:57,122 | INFO     | task id: 46676269
[2025-10-12 17:10:03] 2025-10-12 21:08:57,122 | INFO     | errors: (none)
[2025-10-12 17:10:03] 2025-10-12 21:08:57,122 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 17:10:03] 2025-10-12 21:08:57,123 | INFO     | pilot state: finished 
[2025-10-12 17:10:03] 2025-10-12 21:08:57,123 | INFO     | transexitcode: 0
[2025-10-12 17:10:03] 2025-10-12 21:08:57,123 | INFO     | exeerrorcode: 0
[2025-10-12 17:10:03] 2025-10-12 21:08:57,123 | INFO     | exeerrordiag: 
[2025-10-12 17:10:03] 2025-10-12 21:08:57,123 | INFO     | exitcode: 0
[2025-10-12 17:10:03] 2025-10-12 21:08:57,123 | INFO     | exitmsg: OK
[2025-10-12 17:10:03] 2025-10-12 21:08:57,123 | INFO     | cpuconsumptiontime: 47265 s
[2025-10-12 17:10:03] 2025-10-12 21:08:57,124 | INFO     | nevents: 400
[2025-10-12 17:10:03] 2025-10-12 21:08:57,124 | INFO     | neventsw: 0
[2025-10-12 17:10:03] 2025-10-12 21:08:57,124 | INFO     | pid: 26906
[2025-10-12 17:10:03] 2025-10-12 21:08:57,124 | INFO     | pgrp: 26906
[2025-10-12 17:10:03] 2025-10-12 21:08:57,124 | INFO     | corecount: 12
[2025-10-12 17:10:03] 2025-10-12 21:08:57,124 | INFO     | event service: False
[2025-10-12 17:10:03] 2025-10-12 21:08:57,124 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 4363: 2375225, 4364: 2375224, 4365: 2384462, 4371: 2384600}
[2025-10-12 17:10:03] 2025-10-12 21:08:57,125 | INFO     | --------------------------------------------------
[2025-10-12 17:10:03] 2025-10-12 21:08:57,125 | INFO     | 
[2025-10-12 17:10:03] 2025-10-12 21:08:57,125 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 17:10:03] 2025-10-12 21:08:57,149 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 17:10:03] 2025-10-12 21:08:57,149 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 17:10:03] 2025-10-12 21:08:57,149 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 17:10:03] 2025-10-12 21:08:57,149 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 17:10:03] 2025-10-12 21:08:57,150 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 17:10:03] 2025-10-12 21:08:57,150 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 17:10:03] 2025-10-12 21:08:57,150 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 17:10:03] 2025-10-12 21:08:57,150 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 17:10:03] 2025-10-12 21:08:57,150 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 17:10:03] 2025-10-12 21:08:57,150 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 17:10:03] 2025-10-12 21:08:57,150 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 17:10:03] 2025-10-12 21:08:57,151 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 17:10:03] 2025-10-12 21:08:57,151 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 17:10:03] 2025-10-12 21:08:57,151 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 17:10:03] 2025-10-12 21:08:57,151 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 17:10:03] 2025-10-12 21:08:57,151 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 17:10:03] 2025-10-12 21:08:57,151 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 17:10:03] 2025-10-12 21:08:57,152 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 17:10:03] 2025-10-12 21:08:57,152 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 17:10:03] 2025-10-12 21:08:57,152 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 17:10:03] 2025-10-12 21:08:57,152 | INFO     | job 6840225533 has completed (purged errors)
[2025-10-12 17:10:03] 2025-10-12 21:08:57,152 | INFO     | overall cleanup function is called
[2025-10-12 17:10:03] 2025-10-12 21:08:58,159 | INFO     | --- collectZombieJob: --- 10, [26906]
[2025-10-12 17:10:03] 2025-10-12 21:08:58,159 | INFO     | zombie collector waiting for pid 26906
[2025-10-12 17:10:03] 2025-10-12 21:08:58,159 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 17:10:03] 2025-10-12 21:08:58,159 | INFO     | collected zombie processes
[2025-10-12 17:10:03] 2025-10-12 21:08:58,159 | INFO     | will attempt to kill all subprocesses of pid=26906
[2025-10-12 17:10:03] 2025-10-12 21:08:58,255 | INFO     | process IDs to be killed: [26906] (in reverse order)
[2025-10-12 17:10:03] 2025-10-12 21:08:58,309 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 17:10:03] 2025-10-12 21:08:58,309 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 17:10:03] 2025-10-12 21:08:58,313 | INFO     | did not find any defunct processes belonging to 26906
[2025-10-12 17:10:03] 2025-10-12 21:08:58,316 | INFO     | did not find any defunct processes belonging to 26906
[2025-10-12 17:10:03] 2025-10-12 21:08:58,316 | INFO     | ready for new job
[2025-10-12 17:10:03] 2025-10-12 21:08:58,316 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 17:10:03] 2025-10-12 21:08:58,318 | INFO     | ***************************************
[2025-10-12 17:10:03] 2025-10-12 21:08:58,318 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:10:03] 2025-10-12 21:08:58,318 | INFO     | ***************************************
[2025-10-12 17:10:03] 2025-10-12 21:08:58,318 | INFO     | 
[2025-10-12 17:10:03] 2025-10-12 21:08:58,319 | INFO     | architecture information:
[2025-10-12 17:10:03] 2025-10-12 21:08:58,319 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:10:03] 2025-10-12 21:08:58,334 | INFO     | cat /etc/os-release:
[2025-10-12 17:10:03] NAME="CentOS Linux"
[2025-10-12 17:10:03] VERSION="7 (Core)"
[2025-10-12 17:10:03] ID="centos"
[2025-10-12 17:10:03] ID_LIKE="rhel fedora"
[2025-10-12 17:10:03] VERSION_ID="7"
[2025-10-12 17:10:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:10:03] ANSI_COLOR="0;31"
[2025-10-12 17:10:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:10:03] HOME_URL="https://www.centos.org/"
[2025-10-12 17:10:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:10:03] 
[2025-10-12 17:10:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:10:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:10:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:10:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:10:03] 
[2025-10-12 17:10:03] 2025-10-12 21:08:58,335 | INFO     | ***************************************
[2025-10-12 17:10:03] 2025-10-12 21:08:58,838 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 17:10:03] 2025-10-12 21:08:58,855 | INFO     | sufficient remaining disk space (29358030848 B)
[2025-10-12 17:10:03] 2025-10-12 21:08:58,856 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:10:03] 2025-10-12 21:08:58,856 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:10:03] 2025-10-12 21:08:58,856 | INFO     | update_server=False
[2025-10-12 17:10:03] 2025-10-12 21:08:58,856 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:10:03] 2025-10-12 21:08:58,857 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:10:03] 2025-10-12 21:08:58,879 | INFO     | all data control threads have been joined
[2025-10-12 17:10:03] 2025-10-12 21:08:59,155 | INFO     | all payload control threads have been joined
[2025-10-12 17:10:03] 2025-10-12 21:08:59,313 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 17:10:03] 2025-10-12 21:08:59,313 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 17:10:03] 2025-10-12 21:08:59,313 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:10:03] 2025-10-12 21:08:59,313 | INFO     | will abort loop
[2025-10-12 17:10:03] 2025-10-12 21:08:59,849 | INFO     | all job control threads have been joined
[2025-10-12 17:10:03] 2025-10-12 21:08:59,861 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:10:03] 2025-10-12 21:08:59,884 | INFO     | [data] control thread has finished
[2025-10-12 17:10:03] 2025-10-12 21:08:59,941 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:10:03] 2025-10-12 21:08:59,989 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:10:03] 2025-10-12 21:09:00,161 | INFO     | [payload] control thread has finished
[2025-10-12 17:10:03] 2025-10-12 21:09:00,319 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:10:03] 2025-10-12 21:09:00,360 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:10:03] 2025-10-12 21:09:00,531 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:10:03] 2025-10-12 21:09:00,575 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:10:03] 2025-10-12 21:09:00,854 | INFO     | [job] control thread has finished
[2025-10-12 17:10:03] 2025-10-12 21:09:00,861 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:10:03] 2025-10-12 21:09:00,863 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:10:03] 2025-10-12 21:09:01,185 | INFO     | [job] validate thread has finished
[2025-10-12 17:10:03] 2025-10-12 21:09:01,376 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:10:03] 2025-10-12 21:09:01,788 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:10:03] 2025-10-12 21:09:02,794 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:10:03] 2025-10-12 21:09:05,382 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:10:03] 2025-10-12 21:09:09,215 | INFO     | job.realtimelogging is not enabled
[2025-10-12 17:10:03] 2025-10-12 21:09:10,220 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:10:03] 2025-10-12 21:09:29,452 | INFO     | PID=20414 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 17:10:03] 2025-10-12 21:09:29,453 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:10:03] 2025-10-12 21:09:29,453 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:10:03] 2025-10-12 21:09:29,453 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:10:03] 2025-10-12 21:09:56,054 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:10:03] 2025-10-12 21:09:57,840 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140041813153600)>', '<ExcThread(monitor, started 140041217103616)>']
[2025-10-12 17:10:03] 2025-10-12 21:09:58,596 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:10:03] 2025-10-12 21:09:58,597 | INFO     | [monitor] control thread has ended
[2025-10-12 17:10:03] 2025-10-12 21:10:02,865 | INFO     | all workflow threads have been joined
[2025-10-12 17:10:03] 2025-10-12 21:10:02,865 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:10:03] 2025-10-12 21:10:02,866 | INFO     | traces error code: 0
[2025-10-12 17:10:03] 2025-10-12 21:10:02,866 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:10:03] 2025-10-12 21:10:02,954 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:10:03] 2025-10-12 21:10:02,958 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:10:03] 2025-10-12 21:10:02,962 [wrapper] pilotpid: 20414
[2025-10-12 17:10:03] 2025-10-12 21:10:02,966 [wrapper] Pilot exit status: 0
[2025-10-12 17:10:03] 2025-10-12 21:10:02,983 [wrapper] pandaids: 6840225533
[2025-10-12 17:10:03] 2025-10-12 21:10:03,030 [wrapper] cleanup supervisor_pilot  4779 20415
[2025-10-12 17:10:03] 2025-10-12 21:10:03,034 [wrapper] Test setup, not cleaning
[2025-10-12 17:10:03] 2025-10-12 21:10:03,038 [wrapper] apfmon messages muted
[2025-10-12 17:10:03] 2025-10-12 21:10:03,042 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:10:03] 2025-10-12 21:10:03,046 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:10:03]  *** Error codes and diagnostics ***
[2025-10-12 17:10:03]     "exeErrorCode": 0,
[2025-10-12 17:10:03]     "exeErrorDiag": "",
[2025-10-12 17:10:03]     "pilotErrorCode": 0,
[2025-10-12 17:10:03]     "pilotErrorDiag": "",
[2025-10-12 17:10:03]  *** Listing of results directory ***
[2025-10-12 17:10:03] total 417420
[2025-10-12 17:10:03] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 11:00 pilot3.tar.gz
[2025-10-12 17:10:03] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 11:44 queuedata.json
[2025-10-12 17:10:03] -rwx------ 1 boincer umatlas     36292 Oct 12 11:44 runpilot2-wrapper.sh
[2025-10-12 17:10:03] -rw-r--r-- 1 boincer umatlas       100 Oct 12 15:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:10:03] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 15:55 run_atlas
[2025-10-12 17:10:03] -rw-r--r-- 1 boincer umatlas       105 Oct 12 15:55 job.xml
[2025-10-12 17:10:03] -rw-r--r-- 2 boincer umatlas 222329281 Oct 12 15:55 EVNT.46676267._004586.pool.root.1
[2025-10-12 17:10:03] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 15:55 start_atlas.sh
[2025-10-12 17:10:03] drwxrwx--x 2 boincer umatlas      4096 Oct 12 15:55 shared
[2025-10-12 17:10:03] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 15:55 input.tar.gz
[2025-10-12 17:10:03] -rw-r--r-- 1 boincer umatlas         0 Oct 12 15:55 boinc_lockfile
[2025-10-12 17:10:03] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 15:55 pandaJob.out
[2025-10-12 17:10:03] -rw------- 1 boincer umatlas    975536 Oct 12 15:55 agis_schedconf.cvmfs.json
[2025-10-12 17:10:03] -rw------- 1 boincer umatlas   1560580 Oct 12 15:55 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:10:03] drwx------ 5 boincer umatlas      4096 Oct 12 15:55 pilot3
[2025-10-12 17:10:03] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 17:03 init_data.xml
[2025-10-12 17:10:03] -rw------- 1 boincer umatlas 199175042 Oct 12 17:08 HITS.46676269._082600.pool.root.1
[2025-10-12 17:10:03] -rw-r--r-- 1 boincer umatlas       529 Oct 12 17:08 boinc_task_state.xml
[2025-10-12 17:10:03] -rw------- 1 boincer umatlas      1051 Oct 12 17:08 memory_monitor_summary.json
[2025-10-12 17:10:03] -rw------- 1 boincer umatlas        95 Oct 12 17:08 pilot_heartbeat.json
[2025-10-12 17:10:03] -rw------- 1 boincer umatlas    379171 Oct 12 17:08 log.46676269._082600.job.log.tgz.1
[2025-10-12 17:10:03] -rw------- 1 boincer umatlas      7855 Oct 12 17:08 heartbeat.json
[2025-10-12 17:10:03] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 17:09 boinc_mmap_file
[2025-10-12 17:10:03] -rw-r--r-- 1 boincer umatlas        27 Oct 12 17:10 wrapper_checkpoint.txt
[2025-10-12 17:10:03] -rw------- 1 boincer umatlas      5004 Oct 12 17:10 pilotlog.txt
[2025-10-12 17:10:03] -rw------- 1 boincer umatlas    637956 Oct 12 17:10 log.46676269._082600.job.log.1
[2025-10-12 17:10:03] -rw------- 1 boincer umatlas       357 Oct 12 17:10 output.list
[2025-10-12 17:10:03] -rw-r--r-- 1 boincer umatlas       620 Oct 12 17:10 runtime_log
[2025-10-12 17:10:03] -rw------- 1 boincer umatlas   1034240 Oct 12 17:10 result.tar.gz
[2025-10-12 17:10:03] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 17:10 runtime_log.err
[2025-10-12 17:10:03] -rw------- 1 boincer umatlas       659 Oct 12 17:10 QTFMDmUQDS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmjKUMDmov2WDo.diag
[2025-10-12 17:10:03] -rw-r--r-- 1 boincer umatlas     21970 Oct 12 17:10 stderr.txt
[2025-10-12 17:10:03] HITS file was successfully produced:
[2025-10-12 17:10:03] -rw------- 1 boincer umatlas 199175042 Oct 12 17:08 shared/HITS.pool.root.1
[2025-10-12 17:10:03]  *** Contents of shared directory: ***
[2025-10-12 17:10:03] total 413220
[2025-10-12 17:10:03] -rw-r--r-- 2 boincer umatlas 222329281 Oct 12 15:55 ATLAS.root_0
[2025-10-12 17:10:03] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 15:55 start_atlas.sh
[2025-10-12 17:10:03] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 15:55 input.tar.gz
[2025-10-12 17:10:03] -rw------- 1 boincer umatlas 199175042 Oct 12 17:08 HITS.pool.root.1
[2025-10-12 17:10:03] -rw------- 1 boincer umatlas   1034240 Oct 12 17:10 result.tar.gz
17:10:04 (16717): run_atlas exited; CPU time 47239.529777
17:10:04 (16717): called boinc_finish(0)

</stderr_txt>
]]>

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