Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
20:56:10 (3975687): wrapper (7.7.26015): starting
20:56:10 (3975687): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 20:56:10] Arguments: --nthreads 12
[2025-10-12 20:56:10] Threads: 12
[2025-10-12 20:56:10] Checking for CVMFS
[2025-10-12 20:56:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 20:56:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 20:56:10] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 20:56:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 20:56:10] 2.11.0.0 3299214 3570 89492 151636 0 188 5435950 6144000 13957 130560 0 70049335 100.000 129855 195 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 20:56:10] CVMFS is ok
[2025-10-12 20:56:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:56:10] Checking for apptainer binary...
[2025-10-12 20:56:10] apptainer is not installed, using version from CVMFS
[2025-10-12 20:56:10] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:56:11] radiat0r
[2025-10-12 20:56:11] apptainer works
[2025-10-12 20:56:11] Set ATHENA_PROC_NUMBER=12
[2025-10-12 20:56:11] Set ATHENA_CORE_NUMBER=12
[2025-10-12 20:56:11] Starting ATLAS job with PandaID=6838988540
[2025-10-12 20:56:11] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:50:37]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:50:37] ]
[2025-10-12 21:50:37] 2025-10-12 21:49:46,404 | INFO     | time since job start (3200s) is within the limit (172800.0s)
[2025-10-12 21:50:37] 2025-10-12 21:49:46,422 | INFO     | transferring file log.46676269._064972.job.log.tgz.1 from /var/lib/boinc/slots/6/PanDA_Pilot-6838988540/log.46676269._064972.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-12 21:50:37] 2025-10-12 21:49:46,422 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/6/PanDA_Pilot-6838988540/log.46676269._064972.job.log.tgz.1 /var/lib/boinc/slots/6/log.46676269._064972.job
[2025-10-12 21:50:37] 2025-10-12 21:49:46,448 | INFO     | adding to output.list: log.46676269._064972.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/35/3b/log.46676269._064972.job.log.tg
[2025-10-12 21:50:37] 2025-10-12 21:49:46,449 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 21:50:37] 2025-10-12 21:49:46,449 | INFO     | summary of transferred files:
[2025-10-12 21:50:37] 2025-10-12 21:49:46,449 | INFO     |  -- lfn=log.46676269._064972.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 21:50:37] 2025-10-12 21:49:46,450 | INFO     | stage-out finished correctly
[2025-10-12 21:50:37] 2025-10-12 21:49:47,024 | INFO     | number of running child processes to parent process 3992816: 1
[2025-10-12 21:50:37] 2025-10-12 21:49:47,025 | INFO     | maximum number of monitored processes: 6
[2025-10-12 21:50:37] 2025-10-12 21:49:48,415 | INFO     | time since job start (3202s) is within the limit (172800.0s)
[2025-10-12 21:50:37] 2025-10-12 21:49:49,526 | INFO     | monitor loop #223: job 0:6838988540 is in state 'finished'
[2025-10-12 21:50:37] 2025-10-12 21:49:49,527 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:50:37] 2025-10-12 21:49:49,583 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 21:50:37] 2025-10-12 21:49:50,418 | INFO     | time since job start (3204s) is within the limit (172800.0s)
[2025-10-12 21:50:37] 2025-10-12 21:49:52,030 | INFO     | monitor loop #224: job 0:6838988540 is in state 'finished'
[2025-10-12 21:50:37] 2025-10-12 21:49:52,030 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:50:37] 2025-10-12 21:49:52,217 | INFO     | job 6838988540 has state=finished
[2025-10-12 21:50:37] 2025-10-12 21:49:52,218 | INFO     | preparing for final server update for job 6838988540 in state='finished'
[2025-10-12 21:50:37] 2025-10-12 21:49:52,218 | INFO     | this job has now completed (state=finished)
[2025-10-12 21:50:37] 2025-10-12 21:49:52,219 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 21:50:37] 2025-10-12 21:49:52,219 | INFO     | log transfer has been attempted: DONE
[2025-10-12 21:50:37] 2025-10-12 21:49:52,219 | INFO     | job 6838988540 has finished - writing final server update
[2025-10-12 21:50:37] 2025-10-12 21:49:52,219 | INFO     | total number of processed events: 400 (read)
[2025-10-12 21:50:37] 2025-10-12 21:49:52,222 | INFO     | executing command: lscpu
[2025-10-12 21:50:37] 2025-10-12 21:49:52,412 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 21:50:37] 2025-10-12 21:49:52,424 | INFO     | time since job start (3206s) is within the limit (172800.0s)
[2025-10-12 21:50:37] 2025-10-12 21:49:54,427 | INFO     | time since job start (3208s) is within the limit (172800.0s)
[2025-10-12 21:50:37] 2025-10-12 21:49:54,533 | INFO     | monitor loop #225: job 0:6838988540 is in state 'finished'
[2025-10-12 21:50:37] 2025-10-12 21:49:54,534 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:50:37] 2025-10-12 21:49:56,430 | INFO     | time since job start (3210s) is within the limit (172800.0s)
[2025-10-12 21:50:37] 2025-10-12 21:49:57,037 | INFO     | monitor loop #226: job 0:6838988540 is in state 'finished'
[2025-10-12 21:50:37] 2025-10-12 21:49:57,037 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:50:37] 2025-10-12 21:49:58,435 | INFO     | time since job start (3212s) is within the limit (172800.0s)
[2025-10-12 21:50:37] 2025-10-12 21:49:59,115 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 21:50:37] 2025-10-12 21:49:59,179 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2339.4355664062505
[2025-10-12 21:50:37] 2025-10-12 21:49:59,252 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6838988540/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 21:50:37] 2025-10-12 21:49:59,253 | INFO     | extracted standard info from prmon json
[2025-10-12 21:50:37] 2025-10-12 21:49:59,253 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 21:50:37] 2025-10-12 21:49:59,253 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 21:50:37] 2025-10-12 21:49:59,253 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 21:50:37] 2025-10-12 21:49:59,254 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 21:50:37] 2025-10-12 21:49:59,255 | INFO     | fitting pss+swap vs Time
[2025-10-12 21:50:37] 2025-10-12 21:49:59,255 | INFO     | sum of square deviations: 28242390.0
[2025-10-12 21:50:37] 2025-10-12 21:49:59,256 | INFO     | sum of deviations: 470764938.00000006
[2025-10-12 21:50:37] 2025-10-12 21:49:59,256 | INFO     | mean x: 1760304267.0
[2025-10-12 21:50:37] 2025-10-12 21:49:59,256 | INFO     | mean y: 2666164.6
[2025-10-12 21:50:37] 2025-10-12 21:49:59,256 | INFO     | -- intersect: -29339380635.100403
[2025-10-12 21:50:37] 2025-10-12 21:49:59,256 | INFO     | intersect: -29339380635.100403
[2025-10-12 21:50:37] 2025-10-12 21:49:59,256 | INFO     | chi2: 0.0009122797511556855
[2025-10-12 21:50:37] 2025-10-12 21:49:59,256 | INFO     | -- intersect: -29339380635.100403
[2025-10-12 21:50:37] 2025-10-12 21:49:59,256 | INFO     | current memory leak: 16.67 B/s (using 45 data points, chi2=0.00)
[2025-10-12 21:50:37] 2025-10-12 21:49:59,257 | INFO     | could have reported an average CPU frequency of 2343 MHz (5 samples)
[2025-10-12 21:50:37] 2025-10-12 21:49:59,257 | INFO     | ..............................
[2025-10-12 21:50:37] 2025-10-12 21:49:59,257 | INFO     | . Timing measurements:
[2025-10-12 21:50:37] 2025-10-12 21:49:59,257 | INFO     | . get job = 0 s
[2025-10-12 21:50:37] 2025-10-12 21:49:59,257 | INFO     | . initial setup = 1 s
[2025-10-12 21:50:37] 2025-10-12 21:49:59,257 | INFO     | . payload setup = 8 s
[2025-10-12 21:50:37] 2025-10-12 21:49:59,257 | INFO     | . stage-in = 0 s
[2025-10-12 21:50:37] 2025-10-12 21:49:59,257 | INFO     | . payload execution = 3168 s
[2025-10-12 21:50:37] 2025-10-12 21:49:59,257 | INFO     | . stage-out = 1 s
[2025-10-12 21:50:37] 2025-10-12 21:49:59,257 | INFO     | . log creation = 0 s
[2025-10-12 21:50:37] 2025-10-12 21:49:59,258 | INFO     | ..............................
[2025-10-12 21:50:37] 2025-10-12 21:49:59,630 | INFO     | 
[2025-10-12 21:50:37] 2025-10-12 21:49:59,631 | INFO     | job summary report
[2025-10-12 21:50:37] 2025-10-12 21:49:59,631 | INFO     | --------------------------------------------------
[2025-10-12 21:50:37] 2025-10-12 21:49:59,631 | INFO     | PanDA job id: 6838988540
[2025-10-12 21:50:37] 2025-10-12 21:49:59,631 | INFO     | task id: 46676269
[2025-10-12 21:50:37] 2025-10-12 21:49:59,631 | INFO     | errors: (none)
[2025-10-12 21:50:37] 2025-10-12 21:49:59,631 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 21:50:37] 2025-10-12 21:49:59,631 | INFO     | pilot state: finished 
[2025-10-12 21:50:37] 2025-10-12 21:49:59,631 | INFO     | transexitcode: 0
[2025-10-12 21:50:37] 2025-10-12 21:49:59,631 | INFO     | exeerrorcode: 0
[2025-10-12 21:50:37] 2025-10-12 21:49:59,631 | INFO     | exeerrordiag: 
[2025-10-12 21:50:37] 2025-10-12 21:49:59,631 | INFO     | exitcode: 0
[2025-10-12 21:50:37] 2025-10-12 21:49:59,631 | INFO     | exitmsg: OK
[2025-10-12 21:50:37] 2025-10-12 21:49:59,631 | INFO     | cpuconsumptiontime: 32809 s
[2025-10-12 21:50:37] 2025-10-12 21:49:59,631 | INFO     | nevents: 400
[2025-10-12 21:50:37] 2025-10-12 21:49:59,632 | INFO     | neventsw: 0
[2025-10-12 21:50:37] 2025-10-12 21:49:59,632 | INFO     | pid: 3992816
[2025-10-12 21:50:37] 2025-10-12 21:49:59,632 | INFO     | pgrp: 3992816
[2025-10-12 21:50:37] 2025-10-12 21:49:59,632 | INFO     | corecount: 12
[2025-10-12 21:50:37] 2025-10-12 21:49:59,632 | INFO     | event service: False
[2025-10-12 21:50:37] 2025-10-12 21:49:59,632 | INFO     | sizes: {0: 2348803, 8: 2349065, 11: 2349093, 3181: 2374658, 3182: 2374657, 3183: 2383711, 3186: 2383895, 3196: 2384121}
[2025-10-12 21:50:37] 2025-10-12 21:49:59,632 | INFO     | --------------------------------------------------
[2025-10-12 21:50:37] 2025-10-12 21:49:59,632 | INFO     | 
[2025-10-12 21:50:37] 2025-10-12 21:49:59,632 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-10-12 21:50:37] 2025-10-12 21:49:59,652 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 21:50:37] 2025-10-12 21:49:59,652 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 21:50:37] 2025-10-12 21:49:59,652 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 21:50:37] 2025-10-12 21:49:59,653 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 21:50:37] 2025-10-12 21:49:59,653 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 21:50:37] 2025-10-12 21:49:59,653 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 21:50:37] 2025-10-12 21:49:59,653 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 21:50:37] 2025-10-12 21:49:59,653 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 21:50:37] 2025-10-12 21:49:59,653 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 21:50:37] 2025-10-12 21:49:59,653 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 21:50:37] 2025-10-12 21:49:59,653 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 21:50:37] 2025-10-12 21:49:59,653 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 21:50:37] 2025-10-12 21:49:59,653 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 21:50:37] 2025-10-12 21:49:59,653 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 21:50:37] 2025-10-12 21:49:59,654 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 21:50:37] 2025-10-12 21:49:59,654 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 21:50:37] 2025-10-12 21:49:59,654 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 21:50:37] 2025-10-12 21:49:59,654 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 21:50:37] 2025-10-12 21:49:59,654 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 21:50:37] 2025-10-12 21:49:59,654 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 21:50:37] 2025-10-12 21:49:59,654 | INFO     | job 6838988540 has completed (purged errors)
[2025-10-12 21:50:37] 2025-10-12 21:49:59,654 | INFO     | overall cleanup function is called
[2025-10-12 21:50:37] 2025-10-12 21:50:00,662 | INFO     | --- collectZombieJob: --- 10, [3992816]
[2025-10-12 21:50:37] 2025-10-12 21:50:00,663 | INFO     | zombie collector waiting for pid 3992816
[2025-10-12 21:50:37] 2025-10-12 21:50:00,663 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 21:50:37] 2025-10-12 21:50:00,663 | INFO     | collected zombie processes
[2025-10-12 21:50:37] 2025-10-12 21:50:00,663 | INFO     | will attempt to kill all subprocesses of pid=3992816
[2025-10-12 21:50:37] 2025-10-12 21:50:01,275 | INFO     | process IDs to be killed: [3992816] (in reverse order)
[2025-10-12 21:50:37] 2025-10-12 21:50:01,479 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 21:50:37] 2025-10-12 21:50:01,479 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:50:37] 2025-10-12 21:50:01,501 | INFO     | did not find any defunct processes belonging to 3992816
[2025-10-12 21:50:37] 2025-10-12 21:50:01,521 | INFO     | did not find any defunct processes belonging to 3992816
[2025-10-12 21:50:37] 2025-10-12 21:50:01,521 | INFO     | ready for new job
[2025-10-12 21:50:37] 2025-10-12 21:50:01,521 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:50:37] 2025-10-12 21:50:01,523 | INFO     | ***************************************
[2025-10-12 21:50:37] 2025-10-12 21:50:01,523 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:50:37] 2025-10-12 21:50:01,523 | INFO     | ***************************************
[2025-10-12 21:50:37] 2025-10-12 21:50:01,523 | INFO     | 
[2025-10-12 21:50:37] 2025-10-12 21:50:01,560 | INFO     | architecture information:
[2025-10-12 21:50:37] 2025-10-12 21:50:01,560 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:50:37] 2025-10-12 21:50:01,577 | INFO     | cat /etc/os-release:
[2025-10-12 21:50:37] NAME="CentOS Linux"
[2025-10-12 21:50:37] VERSION="7 (Core)"
[2025-10-12 21:50:37] ID="centos"
[2025-10-12 21:50:37] ID_LIKE="rhel fedora"
[2025-10-12 21:50:37] VERSION_ID="7"
[2025-10-12 21:50:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:50:37] ANSI_COLOR="0;31"
[2025-10-12 21:50:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:50:37] HOME_URL="https://www.centos.org/"
[2025-10-12 21:50:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:50:37] 
[2025-10-12 21:50:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:50:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:50:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:50:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:50:37] 
[2025-10-12 21:50:37] 2025-10-12 21:50:01,577 | INFO     | ***************************************
[2025-10-12 21:50:37] 2025-10-12 21:50:02,078 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-10-12 21:50:37] 2025-10-12 21:50:02,098 | INFO     | sufficient remaining disk space (1724053979136 B)
[2025-10-12 21:50:37] 2025-10-12 21:50:02,098 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:50:37] 2025-10-12 21:50:02,099 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:50:37] 2025-10-12 21:50:02,099 | INFO     | update_server=False
[2025-10-12 21:50:37] 2025-10-12 21:50:02,099 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:50:37] 2025-10-12 21:50:02,099 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:50:37] 2025-10-12 21:50:02,346 | INFO     | all data control threads have been joined
[2025-10-12 21:50:37] 2025-10-12 21:50:02,651 | INFO     | all payload control threads have been joined
[2025-10-12 21:50:37] 2025-10-12 21:50:03,047 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:50:37] 2025-10-12 21:50:03,048 | INFO     | aborting loop
[2025-10-12 21:50:37] 2025-10-12 21:50:03,102 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:50:37] 2025-10-12 21:50:03,306 | INFO     | all job control threads have been joined
[2025-10-12 21:50:37] 2025-10-12 21:50:03,350 | INFO     | [data] control thread has finished
[2025-10-12 21:50:37] 2025-10-12 21:50:03,471 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:50:37] 2025-10-12 21:50:03,654 | INFO     | [payload] control thread has finished
[2025-10-12 21:50:37] 2025-10-12 21:50:03,739 | INFO     | [job] validate thread has finished
[2025-10-12 21:50:37] 2025-10-12 21:50:03,964 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:50:37] 2025-10-12 21:50:04,018 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:50:37] 2025-10-12 21:50:04,048 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:50:37] 2025-10-12 21:50:04,053 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:50:37] 2025-10-12 21:50:04,102 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:50:37] 2025-10-12 21:50:04,143 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:50:37] 2025-10-12 21:50:04,206 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:50:37] 2025-10-12 21:50:04,310 | INFO     | [job] control thread has finished
[2025-10-12 21:50:37] 2025-10-12 21:50:04,362 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:50:37] 2025-10-12 21:50:04,693 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:50:37] 2025-10-12 21:50:05,366 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:50:37] 2025-10-12 21:50:08,699 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:50:37] 2025-10-12 21:50:12,656 | INFO     | job.realtimelogging is not enabled
[2025-10-12 21:50:37] 2025-10-12 21:50:13,658 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:50:37] 2025-10-12 21:50:30,546 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:50:37] 2025-10-12 21:50:32,318 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140551797421888)>', '<ExcThread(monitor, started 140550925711104)>']
[2025-10-12 21:50:37] 2025-10-12 21:50:32,483 | INFO     | PID=3984575 has CPU usage=11.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-12 21:50:37] 2025-10-12 21:50:32,483 | INFO     | .. there are 17 such processes running
[2025-10-12 21:50:37] 2025-10-12 21:50:32,484 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:50:37] 2025-10-12 21:50:32,484 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:50:37] 2025-10-12 21:50:32,484 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:50:37] 2025-10-12 21:50:32,484 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:50:37] 2025-10-12 21:50:32,484 | INFO     | [monitor] control thread has ended
[2025-10-12 21:50:37] 2025-10-12 21:50:37,342 | INFO     | all workflow threads have been joined
[2025-10-12 21:50:37] 2025-10-12 21:50:37,343 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:50:37] 2025-10-12 21:50:37,343 | INFO     | traces error code: 0
[2025-10-12 21:50:37] 2025-10-12 21:50:37,343 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:50:37] 2025-10-12 21:50:37,502 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:50:37] 2025-10-12 21:50:37,506 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:50:37] 2025-10-12 21:50:37,510 [wrapper] pilotpid: 3984575
[2025-10-12 21:50:37] 2025-10-12 21:50:37,514 [wrapper] Pilot exit status: 0
[2025-10-12 21:50:37] 2025-10-12 21:50:37,528 [wrapper] pandaids: 6838988540
[2025-10-12 21:50:37] 2025-10-12 21:50:37,714 [wrapper] cleanup supervisor_pilot  189511 3984576
[2025-10-12 21:50:37] 2025-10-12 21:50:37,719 [wrapper] Test setup, not cleaning
[2025-10-12 21:50:37] 2025-10-12 21:50:37,722 [wrapper] apfmon messages muted
[2025-10-12 21:50:37] 2025-10-12 21:50:37,727 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:50:37] 2025-10-12 21:50:37,730 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:50:37]  *** Error codes and diagnostics ***
[2025-10-12 21:50:37]     "exeErrorCode": 0,
[2025-10-12 21:50:37]     "exeErrorDiag": "",
[2025-10-12 21:50:37]     "pilotErrorCode": 0,
[2025-10-12 21:50:37]     "pilotErrorDiag": "",
[2025-10-12 21:50:37]  *** Listing of results directory ***
[2025-10-12 21:50:37] total 415756
[2025-10-12 21:50:37] -rw-r--r-- 1 boinc boinc    557409 Oct 11 20:53 pilot3.tar.gz
[2025-10-12 21:50:37] -rw-r--r-- 1 boinc boinc      5112 Oct 11 21:01 queuedata.json
[2025-10-12 21:50:37] -rwx------ 1 boinc boinc     36292 Oct 11 21:02 runpilot2-wrapper.sh
[2025-10-12 21:50:37] -rw-r--r-- 1 boinc boinc       100 Oct 12 20:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:50:37] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 20:56 run_atlas
[2025-10-12 21:50:37] -rw-r--r-- 1 boinc boinc       105 Oct 12 20:56 job.xml
[2025-10-12 21:50:37] -rw-r--r-- 2 boinc boinc     15120 Oct 12 20:56 start_atlas.sh
[2025-10-12 21:50:37] drwxrwx--x 2 boinc boinc      4096 Oct 12 20:56 shared
[2025-10-12 21:50:37] -rw-r--r-- 2 boinc boinc    569683 Oct 12 20:56 input.tar.gz
[2025-10-12 21:50:37] -rw-r--r-- 2 boinc boinc 224225076 Oct 12 20:56 EVNT.46676267._001030.pool.root.1
[2025-10-12 21:50:37] -rw-r--r-- 1 boinc boinc      9395 Oct 12 20:56 init_data.xml
[2025-10-12 21:50:37] -rw-r--r-- 1 boinc boinc         0 Oct 12 20:56 boinc_setup_complete
[2025-10-12 21:50:37] -rw-r--r-- 1 boinc boinc         0 Oct 12 20:56 boinc_lockfile
[2025-10-12 21:50:37] -rw-r--r-- 1 boinc boinc      2548 Oct 12 20:56 pandaJob.out
[2025-10-12 21:50:37] -rw------- 1 boinc boinc    975536 Oct 12 20:56 agis_schedconf.cvmfs.json
[2025-10-12 21:50:37] -rw------- 1 boinc boinc   1560580 Oct 12 20:56 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:50:37] drwx------ 5 boinc boinc      4096 Oct 12 20:56 pilot3
[2025-10-12 21:50:37] -rw------- 1 boinc boinc 195954516 Oct 12 21:49 HITS.46676269._064972.pool.root.1
[2025-10-12 21:50:37] -rw-r--r-- 1 boinc boinc       529 Oct 12 21:49 boinc_task_state.xml
[2025-10-12 21:50:37] -rw------- 1 boinc boinc      1036 Oct 12 21:49 memory_monitor_summary.json
[2025-10-12 21:50:37] -rw------- 1 boinc boinc    349815 Oct 12 21:49 log.46676269._064972.job.log.tgz.1
[2025-10-12 21:50:37] -rw------- 1 boinc boinc      7738 Oct 12 21:49 heartbeat.json
[2025-10-12 21:50:37] -rw------- 1 boinc boinc        95 Oct 12 21:50 pilot_heartbeat.json
[2025-10-12 21:50:37] -rw-r--r-- 1 boinc boinc      8192 Oct 12 21:50 boinc_mmap_file
[2025-10-12 21:50:37] -rw------- 1 boinc boinc      4899 Oct 12 21:50 pilotlog.txt
[2025-10-12 21:50:37] -rw-r--r-- 1 boinc boinc        27 Oct 12 21:50 wrapper_checkpoint.txt
[2025-10-12 21:50:37] -rw------- 1 boinc boinc    474608 Oct 12 21:50 log.46676269._064972.job.log.1
[2025-10-12 21:50:37] -rw------- 1 boinc boinc       357 Oct 12 21:50 output.list
[2025-10-12 21:50:37] -rw-r--r-- 1 boinc boinc       620 Oct 12 21:50 runtime_log
[2025-10-12 21:50:37] -rw------- 1 boinc boinc    839680 Oct 12 21:50 result.tar.gz
[2025-10-12 21:50:37] -rw-r--r-- 1 boinc boinc      8658 Oct 12 21:50 runtime_log.err
[2025-10-12 21:50:37] -rw------- 1 boinc boinc       644 Oct 12 21:50 MlLMDmluvR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm0aSMDmyMSmHo.diag
[2025-10-12 21:50:37] -rw-r--r-- 1 boinc boinc     22037 Oct 12 21:50 stderr.txt
[2025-10-12 21:50:37] HITS file was successfully produced:
[2025-10-12 21:50:37] -rw------- 1 boinc boinc 195954516 Oct 12 21:49 shared/HITS.pool.root.1
[2025-10-12 21:50:37]  *** Contents of shared directory: ***
[2025-10-12 21:50:37] total 411740
[2025-10-12 21:50:37] -rw-r--r-- 2 boinc boinc     15120 Oct 12 20:56 start_atlas.sh
[2025-10-12 21:50:37] -rw-r--r-- 2 boinc boinc    569683 Oct 12 20:56 input.tar.gz
[2025-10-12 21:50:37] -rw-r--r-- 2 boinc boinc 224225076 Oct 12 20:56 ATLAS.root_0
[2025-10-12 21:50:37] -rw------- 1 boinc boinc 195954516 Oct 12 21:49 HITS.pool.root.1
[2025-10-12 21:50:37] -rw------- 1 boinc boinc    839680 Oct 12 21:50 result.tar.gz
21:50:39 (3975687): run_atlas exited; CPU time 33006.750101
21:50:39 (3975687): called boinc_finish(0)

</stderr_txt>
]]>

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