Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:47:08 (21279): wrapper (7.7.26015): starting
15:47:08 (21279): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 15:47:08] Arguments: --nthreads 12
[2025-10-12 15:47:08] Threads: 12
[2025-10-12 15:47:08] Checking for CVMFS
[2025-10-12 15:47:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 15:47:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 15:47:08] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 15:47:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 15:47:08] 2.11.2.0 2998 223274 103128 151635 1 56 15491842 20275201 1 130560 1 109307562 99.984 13387611 12706 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 15:47:08] CVMFS is ok
[2025-10-12 15:47:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 15:47:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 15:47:08] Further information can be found at the LHC@home message board.
[2025-10-12 15:47:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 15:47:08] Checking for apptainer binary...
[2025-10-12 15:47:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 15:47:08] Running /usr/bin/apptainer --version
[2025-10-12 15:47:08] apptainer version 1.3.2-1.el7
[2025-10-12 15:47:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 15:47:10] c-205-25.aglt2.org
[2025-10-12 15:47:10] apptainer works
[2025-10-12 15:47:10] Set ATHENA_PROC_NUMBER=12
[2025-10-12 15:47:10] Set ATHENA_CORE_NUMBER=12
[2025-10-12 15:47:10] Starting ATLAS job with PandaID=6839928882
[2025-10-12 15:47:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:04:37]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:04:37]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 17:04:37]  replicas=None
[2025-10-12 17:04:37]  scope=mc23_13p6TeV
[2025-10-12 17:04:37]  status=None
[2025-10-12 17:04:37]  status_code=0
[2025-10-12 17:04:37]  storage_token=
[2025-10-12 17:04:37]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839928882/log.46676269._078019.job.log.tgz.1
[2025-10-12 17:04:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f6/5a/log.46676269._078019.job.log.tgz.1
[2025-10-12 17:04:37]  workdir=None
[2025-10-12 17:04:37] ]
[2025-10-12 17:04:37] 2025-10-12 21:03:26,595 | INFO     | transferring file log.46676269._078019.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839928882/log.46676269._078019.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 17:04:37] 2025-10-12 21:03:26,596 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839928882/log.46676269._078019.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._078019.job
[2025-10-12 17:04:37] 2025-10-12 21:03:26,618 | INFO     | adding to output.list: log.46676269._078019.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f6/5a/log.46676269._078019.job.log.tg
[2025-10-12 17:04:37] 2025-10-12 21:03:26,619 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 17:04:37] 2025-10-12 21:03:26,619 | INFO     | summary of transferred files:
[2025-10-12 17:04:37] 2025-10-12 21:03:26,619 | INFO     |  -- lfn=log.46676269._078019.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 17:04:37] 2025-10-12 21:03:26,620 | INFO     | stage-out finished correctly
[2025-10-12 17:04:37] 2025-10-12 21:03:26,844 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 17:04:37] 2025-10-12 21:03:27,386 | INFO     | job 6839928882 has state=finished
[2025-10-12 17:04:37] 2025-10-12 21:03:27,386 | INFO     | preparing for final server update for job 6839928882 in state='finished'
[2025-10-12 17:04:37] 2025-10-12 21:03:27,387 | INFO     | this job has now completed (state=finished)
[2025-10-12 17:04:37] 2025-10-12 21:03:27,387 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 17:04:37] 2025-10-12 21:03:27,387 | INFO     | log transfer has been attempted: DONE
[2025-10-12 17:04:37] 2025-10-12 21:03:27,387 | INFO     | job 6839928882 has finished - writing final server update
[2025-10-12 17:04:37] 2025-10-12 21:03:27,388 | INFO     | total number of processed events: 400 (read)
[2025-10-12 17:04:37] 2025-10-12 21:03:27,389 | INFO     | executing command: lscpu
[2025-10-12 17:04:37] 2025-10-12 21:03:27,393 | INFO     | time since job start (4562s) is within the limit (172800.0s)
[2025-10-12 17:04:37] 2025-10-12 21:03:27,415 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 17:04:37] 2025-10-12 21:03:27,735 | WARNING  | process 32336 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 17:04:37] 2025-10-12 21:03:27,736 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839928882/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:04:37] 2025-10-12 21:03:27,826 | INFO     | number of running child processes to parent process 32336: 1
[2025-10-12 17:04:37] 2025-10-12 21:03:27,826 | INFO     | maximum number of monitored processes: 6
[2025-10-12 17:04:37] 2025-10-12 21:03:29,399 | INFO     | time since job start (4564s) is within the limit (172800.0s)
[2025-10-12 17:04:37] 2025-10-12 21:03:30,329 | INFO     | monitor loop #339: job 0:6839928882 is in state 'finished'
[2025-10-12 17:04:37] 2025-10-12 21:03:30,329 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:04:37] 2025-10-12 21:03:31,405 | INFO     | time since job start (4566s) is within the limit (172800.0s)
[2025-10-12 17:04:37] 2025-10-12 21:03:32,015 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 17:04:37] 2025-10-12 21:03:32,019 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-12 17:04:37] 2025-10-12 21:03:32,021 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839928882/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:04:37] 2025-10-12 21:03:32,022 | INFO     | extracted standard info from prmon json
[2025-10-12 17:04:37] 2025-10-12 21:03:32,022 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 17:04:37] 2025-10-12 21:03:32,023 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 17:04:37] 2025-10-12 21:03:32,023 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 17:04:37] 2025-10-12 21:03:32,023 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 17:04:37] 2025-10-12 21:03:32,025 | INFO     | fitting pss+swap vs Time
[2025-10-12 17:04:37] 2025-10-12 21:03:32,025 | INFO     | sum of square deviations: 97479037.0
[2025-10-12 17:04:37] 2025-10-12 21:03:32,026 | INFO     | sum of deviations: -6412668706.500001
[2025-10-12 17:04:37] 2025-10-12 21:03:32,026 | INFO     | mean x: 1760300821.5
[2025-10-12 17:04:37] 2025-10-12 21:03:32,026 | INFO     | mean y: 2767835.4264705884
[2025-10-12 17:04:37] 2025-10-12 21:03:32,026 | INFO     | -- intersect: 115804342609.4909
[2025-10-12 17:04:37] 2025-10-12 21:03:32,026 | INFO     | intersect: 115804342609.4909
[2025-10-12 17:04:37] 2025-10-12 21:03:32,026 | INFO     | chi2: 0.08991018000566221
[2025-10-12 17:04:37] 2025-10-12 21:03:32,026 | INFO     | -- intersect: 115804342609.4909
[2025-10-12 17:04:37] 2025-10-12 21:03:32,027 | INFO     | current memory leak: -65.79 B/s (using 68 data points, chi2=0.09)
[2025-10-12 17:04:37] 2025-10-12 21:03:32,027 | INFO     | could have reported an average CPU frequency of 2034 MHz (6 samples)
[2025-10-12 17:04:37] 2025-10-12 21:03:32,027 | INFO     | ..............................
[2025-10-12 17:04:37] 2025-10-12 21:03:32,027 | INFO     | . Timing measurements:
[2025-10-12 17:04:37] 2025-10-12 21:03:32,027 | INFO     | . get job = 0 s
[2025-10-12 17:04:37] 2025-10-12 21:03:32,027 | INFO     | . initial setup = 2 s
[2025-10-12 17:04:37] 2025-10-12 21:03:32,027 | INFO     | . payload setup = 7 s
[2025-10-12 17:04:37] 2025-10-12 21:03:32,028 | INFO     | . stage-in = 0 s
[2025-10-12 17:04:37] 2025-10-12 21:03:32,028 | INFO     | . payload execution = 4533 s
[2025-10-12 17:04:37] 2025-10-12 21:03:32,028 | INFO     | . stage-out = 0 s
[2025-10-12 17:04:37] 2025-10-12 21:03:32,028 | INFO     | . log creation = 0 s
[2025-10-12 17:04:37] 2025-10-12 21:03:32,028 | INFO     | ..............................
[2025-10-12 17:04:37] 2025-10-12 21:03:32,109 | INFO     | 
[2025-10-12 17:04:37] 2025-10-12 21:03:32,110 | INFO     | job summary report
[2025-10-12 17:04:37] 2025-10-12 21:03:32,110 | INFO     | --------------------------------------------------
[2025-10-12 17:04:37] 2025-10-12 21:03:32,110 | INFO     | PanDA job id: 6839928882
[2025-10-12 17:04:37] 2025-10-12 21:03:32,110 | INFO     | task id: 46676269
[2025-10-12 17:04:37] 2025-10-12 21:03:32,110 | INFO     | errors: (none)
[2025-10-12 17:04:37] 2025-10-12 21:03:32,111 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 17:04:37] 2025-10-12 21:03:32,111 | INFO     | pilot state: finished 
[2025-10-12 17:04:37] 2025-10-12 21:03:32,111 | INFO     | transexitcode: 0
[2025-10-12 17:04:37] 2025-10-12 21:03:32,111 | INFO     | exeerrorcode: 0
[2025-10-12 17:04:37] 2025-10-12 21:03:32,111 | INFO     | exeerrordiag: 
[2025-10-12 17:04:37] 2025-10-12 21:03:32,111 | INFO     | exitcode: 0
[2025-10-12 17:04:37] 2025-10-12 21:03:32,112 | INFO     | exitmsg: OK
[2025-10-12 17:04:37] 2025-10-12 21:03:32,112 | INFO     | cpuconsumptiontime: 48138 s
[2025-10-12 17:04:37] 2025-10-12 21:03:32,112 | INFO     | nevents: 400
[2025-10-12 17:04:37] 2025-10-12 21:03:32,112 | INFO     | neventsw: 0
[2025-10-12 17:04:37] 2025-10-12 21:03:32,112 | INFO     | pid: 32336
[2025-10-12 17:04:37] 2025-10-12 21:03:32,112 | INFO     | pgrp: 32336
[2025-10-12 17:04:37] 2025-10-12 21:03:32,112 | INFO     | corecount: 12
[2025-10-12 17:04:37] 2025-10-12 21:03:32,113 | INFO     | event service: False
[2025-10-12 17:04:37] 2025-10-12 21:03:32,113 | INFO     | sizes: {0: 2348029, 1: 2348885, 6: 2349147, 12: 2349175, 4544: 2375280, 4546: 2384462, 4551: 2384600}
[2025-10-12 17:04:37] 2025-10-12 21:03:32,113 | INFO     | --------------------------------------------------
[2025-10-12 17:04:37] 2025-10-12 21:03:32,113 | INFO     | 
[2025-10-12 17:04:37] 2025-10-12 21:03:32,113 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 17:04:37] 2025-10-12 21:03:32,137 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 17:04:37] 2025-10-12 21:03:32,138 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 17:04:37] 2025-10-12 21:03:32,138 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 17:04:37] 2025-10-12 21:03:32,138 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 17:04:37] 2025-10-12 21:03:32,138 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 17:04:37] 2025-10-12 21:03:32,138 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 17:04:37] 2025-10-12 21:03:32,139 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 17:04:37] 2025-10-12 21:03:32,139 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 17:04:37] 2025-10-12 21:03:32,139 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 17:04:37] 2025-10-12 21:03:32,139 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 17:04:37] 2025-10-12 21:03:32,139 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 17:04:37] 2025-10-12 21:03:32,139 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 17:04:37] 2025-10-12 21:03:32,140 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 17:04:37] 2025-10-12 21:03:32,140 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 17:04:37] 2025-10-12 21:03:32,140 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 17:04:37] 2025-10-12 21:03:32,140 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 17:04:37] 2025-10-12 21:03:32,140 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 17:04:37] 2025-10-12 21:03:32,140 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 17:04:37] 2025-10-12 21:03:32,141 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 17:04:37] 2025-10-12 21:03:32,141 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 17:04:37] 2025-10-12 21:03:32,141 | INFO     | job 6839928882 has completed (purged errors)
[2025-10-12 17:04:37] 2025-10-12 21:03:32,141 | INFO     | overall cleanup function is called
[2025-10-12 17:04:37] 2025-10-12 21:03:33,150 | INFO     | --- collectZombieJob: --- 10, [32336]
[2025-10-12 17:04:37] 2025-10-12 21:03:33,150 | INFO     | zombie collector waiting for pid 32336
[2025-10-12 17:04:37] 2025-10-12 21:03:33,150 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 17:04:37] 2025-10-12 21:03:33,150 | INFO     | collected zombie processes
[2025-10-12 17:04:37] 2025-10-12 21:03:33,150 | INFO     | will attempt to kill all subprocesses of pid=32336
[2025-10-12 17:04:37] 2025-10-12 21:03:33,240 | INFO     | process IDs to be killed: [32336] (in reverse order)
[2025-10-12 17:04:37] 2025-10-12 21:03:33,293 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 17:04:37] 2025-10-12 21:03:33,293 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 17:04:37] 2025-10-12 21:03:33,296 | INFO     | did not find any defunct processes belonging to 32336
[2025-10-12 17:04:37] 2025-10-12 21:03:33,299 | INFO     | did not find any defunct processes belonging to 32336
[2025-10-12 17:04:37] 2025-10-12 21:03:33,299 | INFO     | ready for new job
[2025-10-12 17:04:37] 2025-10-12 21:03:33,299 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 17:04:37] 2025-10-12 21:03:33,300 | INFO     | ***************************************
[2025-10-12 17:04:37] 2025-10-12 21:03:33,300 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:04:37] 2025-10-12 21:03:33,300 | INFO     | ***************************************
[2025-10-12 17:04:37] 2025-10-12 21:03:33,300 | INFO     | 
[2025-10-12 17:04:37] 2025-10-12 21:03:33,301 | INFO     | architecture information:
[2025-10-12 17:04:37] 2025-10-12 21:03:33,302 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:04:37] 2025-10-12 21:03:33,318 | INFO     | cat /etc/os-release:
[2025-10-12 17:04:37] NAME="CentOS Linux"
[2025-10-12 17:04:37] VERSION="7 (Core)"
[2025-10-12 17:04:37] ID="centos"
[2025-10-12 17:04:37] ID_LIKE="rhel fedora"
[2025-10-12 17:04:37] VERSION_ID="7"
[2025-10-12 17:04:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:04:37] ANSI_COLOR="0;31"
[2025-10-12 17:04:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:04:37] HOME_URL="https://www.centos.org/"
[2025-10-12 17:04:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:04:37] 
[2025-10-12 17:04:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:04:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:04:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:04:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:04:37] 
[2025-10-12 17:04:37] 2025-10-12 21:03:33,319 | INFO     | ***************************************
[2025-10-12 17:04:37] 2025-10-12 21:03:33,820 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 17:04:37] 2025-10-12 21:03:33,836 | INFO     | sufficient remaining disk space (29358030848 B)
[2025-10-12 17:04:37] 2025-10-12 21:03:33,837 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:04:37] 2025-10-12 21:03:33,837 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:04:37] 2025-10-12 21:03:33,837 | INFO     | update_server=False
[2025-10-12 17:04:37] 2025-10-12 21:03:33,837 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:04:37] 2025-10-12 21:03:33,838 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:04:37] 2025-10-12 21:03:33,838 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:04:37] 2025-10-12 21:03:33,838 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:04:37] 2025-10-12 21:03:33,839 | INFO     | aborting loop
[2025-10-12 17:04:37] 2025-10-12 21:03:34,066 | INFO     | all data control threads have been joined
[2025-10-12 17:04:37] 2025-10-12 21:03:34,467 | INFO     | all payload control threads have been joined
[2025-10-12 17:04:37] 2025-10-12 21:03:34,714 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:04:37] 2025-10-12 21:03:34,840 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:04:37] 2025-10-12 21:03:34,842 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:04:37] 2025-10-12 21:03:34,843 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:04:37] 2025-10-12 21:03:35,071 | INFO     | [data] control thread has finished
[2025-10-12 17:04:37] 2025-10-12 21:03:35,258 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:04:37] 2025-10-12 21:03:35,473 | INFO     | [payload] control thread has finished
[2025-10-12 17:04:37] 2025-10-12 21:03:35,524 | INFO     | all job control threads have been joined
[2025-10-12 17:04:37] 2025-10-12 21:03:35,820 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:04:37] 2025-10-12 21:03:35,821 | INFO     | [job] validate thread has finished
[2025-10-12 17:04:37] 2025-10-12 21:03:36,000 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:04:37] 2025-10-12 21:03:36,055 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:04:37] 2025-10-12 21:03:36,124 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:04:37] 2025-10-12 21:03:36,338 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:04:37] 2025-10-12 21:03:36,530 | INFO     | [job] control thread has finished
[2025-10-12 17:04:37] 2025-10-12 21:03:36,717 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:04:37] 2025-10-12 21:03:37,843 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:04:37] 2025-10-12 21:03:44,609 | INFO     | job.realtimelogging is not enabled
[2025-10-12 17:04:37] 2025-10-12 21:03:45,615 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:04:37] 2025-10-12 21:04:04,605 | INFO     | PID=25864 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 17:04:37] 2025-10-12 21:04:04,605 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:04:37] 2025-10-12 21:04:04,605 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:04:37] 2025-10-12 21:04:04,605 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:04:37] 2025-10-12 21:04:31,978 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:04:37] 2025-10-12 21:04:32,525 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139773249374016)>', '<ExcThread(monitor, started 139772437710592)>']
[2025-10-12 17:04:37] 2025-10-12 21:04:32,743 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:04:37] 2025-10-12 21:04:32,744 | INFO     | [monitor] control thread has ended
[2025-10-12 17:04:37] 2025-10-12 21:04:37,550 | INFO     | all workflow threads have been joined
[2025-10-12 17:04:37] 2025-10-12 21:04:37,550 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:04:37] 2025-10-12 21:04:37,550 | INFO     | traces error code: 0
[2025-10-12 17:04:37] 2025-10-12 21:04:37,550 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:04:37] 2025-10-12 21:04:37,646 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:04:37] 2025-10-12 21:04:37,650 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:04:37] 2025-10-12 21:04:37,653 [wrapper] pilotpid: 25864
[2025-10-12 17:04:37] 2025-10-12 21:04:37,657 [wrapper] Pilot exit status: 0
[2025-10-12 17:04:37] 2025-10-12 21:04:37,673 [wrapper] pandaids: 6839928882
[2025-10-12 17:04:37] 2025-10-12 21:04:37,719 [wrapper] cleanup supervisor_pilot 27337 25865
[2025-10-12 17:04:37] 2025-10-12 21:04:37,723 [wrapper] Test setup, not cleaning
[2025-10-12 17:04:37] 2025-10-12 21:04:37,727 [wrapper] apfmon messages muted
[2025-10-12 17:04:37] 2025-10-12 21:04:37,731 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:04:37] 2025-10-12 21:04:37,735 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:04:37]  *** Error codes and diagnostics ***
[2025-10-12 17:04:37]     "exeErrorCode": 0,
[2025-10-12 17:04:37]     "exeErrorDiag": "",
[2025-10-12 17:04:37]     "pilotErrorCode": 0,
[2025-10-12 17:04:37]     "pilotErrorDiag": "",
[2025-10-12 17:04:37]  *** Listing of results directory ***
[2025-10-12 17:04:37] total 415664
[2025-10-12 17:04:37] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 08:10 pilot3.tar.gz
[2025-10-12 17:04:37] -rwx------ 1 boincer umatlas     36292 Oct 12 08:20 runpilot2-wrapper.sh
[2025-10-12 17:04:37] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 08:20 queuedata.json
[2025-10-12 17:04:37] -rw-r--r-- 1 boincer umatlas       100 Oct 12 15:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:04:37] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 15:47 run_atlas
[2025-10-12 17:04:37] -rw-r--r-- 1 boincer umatlas       105 Oct 12 15:47 job.xml
[2025-10-12 17:04:37] -rw-r--r-- 2 boincer umatlas 219787073 Oct 12 15:47 EVNT.46676267._003759.pool.root.1
[2025-10-12 17:04:37] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 15:47 start_atlas.sh
[2025-10-12 17:04:37] drwxrwx--x 2 boincer umatlas      4096 Oct 12 15:47 shared
[2025-10-12 17:04:37] -rw-r--r-- 2 boincer umatlas    569674 Oct 12 15:47 input.tar.gz
[2025-10-12 17:04:37] -rw-r--r-- 1 boincer umatlas         0 Oct 12 15:47 boinc_lockfile
[2025-10-12 17:04:37] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 15:47 pandaJob.out
[2025-10-12 17:04:37] -rw------- 1 boincer umatlas    975536 Oct 12 15:47 agis_schedconf.cvmfs.json
[2025-10-12 17:04:37] -rw------- 1 boincer umatlas   1560580 Oct 12 15:47 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:04:37] drwx------ 5 boincer umatlas      4096 Oct 12 15:47 pilot3
[2025-10-12 17:04:37] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 17:01 init_data.xml
[2025-10-12 17:04:37] -rw------- 1 boincer umatlas 199853483 Oct 12 17:02 HITS.46676269._078019.pool.root.1
[2025-10-12 17:04:37] -rw-r--r-- 1 boincer umatlas       529 Oct 12 17:03 boinc_task_state.xml
[2025-10-12 17:04:37] -rw------- 1 boincer umatlas      1050 Oct 12 17:03 memory_monitor_summary.json
[2025-10-12 17:04:37] -rw------- 1 boincer umatlas        95 Oct 12 17:03 pilot_heartbeat.json
[2025-10-12 17:04:37] -rw------- 1 boincer umatlas    389845 Oct 12 17:03 log.46676269._078019.job.log.tgz.1
[2025-10-12 17:04:37] -rw------- 1 boincer umatlas      7858 Oct 12 17:03 heartbeat.json
[2025-10-12 17:04:37] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 17:04 boinc_mmap_file
[2025-10-12 17:04:37] -rw-r--r-- 1 boincer umatlas        27 Oct 12 17:04 wrapper_checkpoint.txt
[2025-10-12 17:04:37] -rw------- 1 boincer umatlas      4818 Oct 12 17:04 pilotlog.txt
[2025-10-12 17:04:37] -rw------- 1 boincer umatlas    660532 Oct 12 17:04 log.46676269._078019.job.log.1
[2025-10-12 17:04:37] -rw------- 1 boincer umatlas       357 Oct 12 17:04 output.list
[2025-10-12 17:04:37] -rw-r--r-- 1 boincer umatlas       620 Oct 12 17:04 runtime_log
[2025-10-12 17:04:37] -rw------- 1 boincer umatlas   1064960 Oct 12 17:04 result.tar.gz
[2025-10-12 17:04:37] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 17:04 runtime_log.err
[2025-10-12 17:04:37] -rw------- 1 boincer umatlas       659 Oct 12 17:04 dYbMDmDFAS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmmkjNDmW4PhVo.diag
[2025-10-12 17:04:37] -rw-r--r-- 1 boincer umatlas     21839 Oct 12 17:04 stderr.txt
[2025-10-12 17:04:37] HITS file was successfully produced:
[2025-10-12 17:04:37] -rw------- 1 boincer umatlas 199853483 Oct 12 17:02 shared/HITS.pool.root.1
[2025-10-12 17:04:37]  *** Contents of shared directory: ***
[2025-10-12 17:04:37] total 411428
[2025-10-12 17:04:37] -rw-r--r-- 2 boincer umatlas 219787073 Oct 12 15:47 ATLAS.root_0
[2025-10-12 17:04:37] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 15:47 start_atlas.sh
[2025-10-12 17:04:37] -rw-r--r-- 2 boincer umatlas    569674 Oct 12 15:47 input.tar.gz
[2025-10-12 17:04:37] -rw------- 1 boincer umatlas 199853483 Oct 12 17:02 HITS.pool.root.1
[2025-10-12 17:04:37] -rw------- 1 boincer umatlas   1064960 Oct 12 17:04 result.tar.gz
17:04:39 (21279): run_atlas exited; CPU time 48119.398291
17:04:39 (21279): called boinc_finish(0)

</stderr_txt>
]]>

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