Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:44:57 (94777): wrapper (7.7.26015): starting
15:44:57 (94777): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 15:44:57] Arguments: --nthreads 8
[2025-10-12 15:44:57] Threads: 8
[2025-10-12 15:44:57] Checking for CVMFS
[2025-10-12 15:44:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 15:44:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 15:44:57] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 15:44:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 15:44:58] 2.13.1.0 7481 77775 108488 151635 2 448 34414157 40960001 30386 16776704 0 448340438 99.780 253552666 45793 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 15:44:58] CVMFS is ok
[2025-10-12 15:44:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 15:44:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 15:44:58] Further information can be found at the LHC@home message board.
[2025-10-12 15:44:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 15:44:58] Checking for apptainer binary...
[2025-10-12 15:44:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 15:44:58] Running /usr/bin/apptainer --version
[2025-10-12 15:44:58] apptainer version 1.4.3-1.el9
[2025-10-12 15:44:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 15:44:58] c-208-38.aglt2.org
[2025-10-12 15:44:58] apptainer works
[2025-10-12 15:44:58] Set ATHENA_PROC_NUMBER=8
[2025-10-12 15:44:58] Set ATHENA_CORE_NUMBER=8
[2025-10-12 15:44:58] Starting ATLAS job with PandaID=6840225666
[2025-10-12 15:44:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 16:58:03]  *** The last 200 lines of the pilot log: ***
[2025-10-12 16:58:03] 2025-10-12 20:57:12,185 | INFO     | .. there are 23 such processes running
[2025-10-12 16:58:03] 2025-10-12 20:57:13,187 | INFO     | time since job start (4302s) is within the limit (172800.0s)
[2025-10-12 16:58:03] 2025-10-12 20:57:13,544 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 16:58:03] 2025-10-12 20:57:13,842 | WARNING  | process 105727 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 16:58:03] 2025-10-12 20:57:13,842 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6840225666/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 16:58:03] 2025-10-12 20:57:14,347 | INFO     | number of running child processes to parent process 105727: 1
[2025-10-12 16:58:03] 2025-10-12 20:57:14,347 | INFO     | maximum number of monitored processes: 6
[2025-10-12 16:58:03] 2025-10-12 20:57:15,198 | INFO     | time since job start (4304s) is within the limit (172800.0s)
[2025-10-12 16:58:03] 2025-10-12 20:57:16,378 | INFO     | job 6840225666 has state=finished
[2025-10-12 16:58:03] 2025-10-12 20:57:16,379 | INFO     | preparing for final server update for job 6840225666 in state='finished'
[2025-10-12 16:58:03] 2025-10-12 20:57:16,379 | INFO     | this job has now completed (state=finished)
[2025-10-12 16:58:03] 2025-10-12 20:57:16,379 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 16:58:03] 2025-10-12 20:57:16,379 | INFO     | log transfer has been attempted: DONE
[2025-10-12 16:58:03] 2025-10-12 20:57:16,379 | INFO     | job 6840225666 has finished - writing final server update
[2025-10-12 16:58:03] 2025-10-12 20:57:16,379 | INFO     | total number of processed events: 400 (read)
[2025-10-12 16:58:03] 2025-10-12 20:57:16,380 | INFO     | executing command: lscpu
[2025-10-12 16:58:03] 2025-10-12 20:57:16,494 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 16:58:03] 2025-10-12 20:57:16,852 | INFO     | monitor loop #299: job 0:6840225666 is in state 'finished'
[2025-10-12 16:58:03] 2025-10-12 20:57:16,853 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:58:03] 2025-10-12 20:57:17,206 | INFO     | time since job start (4306s) is within the limit (172800.0s)
[2025-10-12 16:58:03] 2025-10-12 20:57:19,212 | INFO     | time since job start (4308s) is within the limit (172800.0s)
[2025-10-12 16:58:03] 2025-10-12 20:57:19,356 | INFO     | monitor loop #300: job 0:6840225666 is in state 'finished'
[2025-10-12 16:58:03] 2025-10-12 20:57:19,356 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:58:03] 2025-10-12 20:57:21,219 | INFO     | time since job start (4310s) is within the limit (172800.0s)
[2025-10-12 16:58:03] 2025-10-12 20:57:21,860 | INFO     | monitor loop #301: job 0:6840225666 is in state 'finished'
[2025-10-12 16:58:03] 2025-10-12 20:57:21,861 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:58:03] 2025-10-12 20:57:23,228 | INFO     | time since job start (4312s) is within the limit (172800.0s)
[2025-10-12 16:58:03] 2025-10-12 20:57:24,365 | INFO     | monitor loop #302: job 0:6840225666 is in state 'finished'
[2025-10-12 16:58:03] 2025-10-12 20:57:24,366 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:58:03] 2025-10-12 20:57:25,236 | INFO     | time since job start (4314s) is within the limit (172800.0s)
[2025-10-12 16:58:03] 2025-10-12 20:57:26,871 | INFO     | monitor loop #303: job 0:6840225666 is in state 'finished'
[2025-10-12 16:58:03] 2025-10-12 20:57:26,871 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:58:03] 2025-10-12 20:57:27,256 | INFO     | time since job start (4316s) is within the limit (172800.0s)
[2025-10-12 16:58:03] 2025-10-12 20:57:29,263 | INFO     | time since job start (4318s) is within the limit (172800.0s)
[2025-10-12 16:58:03] 2025-10-12 20:57:29,374 | INFO     | monitor loop #304: job 0:6840225666 is in state 'finished'
[2025-10-12 16:58:03] 2025-10-12 20:57:29,374 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:58:03] 2025-10-12 20:57:30,567 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 16:58:03] 2025-10-12 20:57:30,593 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3752.856843750001
[2025-10-12 16:58:03] 2025-10-12 20:57:30,614 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6840225666/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 16:58:03] 2025-10-12 20:57:30,615 | INFO     | extracted standard info from prmon json
[2025-10-12 16:58:03] 2025-10-12 20:57:30,615 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 16:58:03] 2025-10-12 20:57:30,615 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 16:58:03] 2025-10-12 20:57:30,616 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 16:58:03] 2025-10-12 20:57:30,616 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 16:58:03] 2025-10-12 20:57:30,617 | INFO     | fitting pss+swap vs Time
[2025-10-12 16:58:03] 2025-10-12 20:57:30,618 | INFO     | sum of square deviations: 73882315.5
[2025-10-12 16:58:03] 2025-10-12 20:57:30,618 | INFO     | sum of deviations: -642967297.4999999
[2025-10-12 16:58:03] 2025-10-12 20:57:30,618 | INFO     | mean x: 1760300582.5
[2025-10-12 16:58:03] 2025-10-12 20:57:30,618 | INFO     | mean y: 2520805.4677419355
[2025-10-12 16:58:03] 2025-10-12 20:57:30,618 | INFO     | -- intersect: 15321690225.891504
[2025-10-12 16:58:03] 2025-10-12 20:57:30,618 | INFO     | intersect: 15321690225.891504
[2025-10-12 16:58:03] 2025-10-12 20:57:30,618 | INFO     | chi2: 0.044829819893153364
[2025-10-12 16:58:03] 2025-10-12 20:57:30,618 | INFO     | -- intersect: 15321690225.891504
[2025-10-12 16:58:03] 2025-10-12 20:57:30,618 | INFO     | current memory leak: -8.70 B/s (using 62 data points, chi2=0.04)
[2025-10-12 16:58:03] 2025-10-12 20:57:30,619 | INFO     | could have reported an average CPU frequency of 3756 MHz (6 samples)
[2025-10-12 16:58:03] 2025-10-12 20:57:30,619 | INFO     | ..............................
[2025-10-12 16:58:03] 2025-10-12 20:57:30,619 | INFO     | . Timing measurements:
[2025-10-12 16:58:03] 2025-10-12 20:57:30,619 | INFO     | . get job = 0 s
[2025-10-12 16:58:03] 2025-10-12 20:57:30,619 | INFO     | . initial setup = 4 s
[2025-10-12 16:58:03] 2025-10-12 20:57:30,619 | INFO     | . payload setup = 26 s
[2025-10-12 16:58:03] 2025-10-12 20:57:30,619 | INFO     | . stage-in = 0 s
[2025-10-12 16:58:03] 2025-10-12 20:57:30,619 | INFO     | . payload execution = 4226 s
[2025-10-12 16:58:03] 2025-10-12 20:57:30,619 | INFO     | . stage-out = 0 s
[2025-10-12 16:58:03] 2025-10-12 20:57:30,619 | INFO     | . log creation = 0 s
[2025-10-12 16:58:03] 2025-10-12 20:57:30,619 | INFO     | ..............................
[2025-10-12 16:58:03] 2025-10-12 20:57:30,817 | INFO     | 
[2025-10-12 16:58:03] 2025-10-12 20:57:30,818 | INFO     | job summary report
[2025-10-12 16:58:03] 2025-10-12 20:57:30,818 | INFO     | --------------------------------------------------
[2025-10-12 16:58:03] 2025-10-12 20:57:30,818 | INFO     | PanDA job id: 6840225666
[2025-10-12 16:58:03] 2025-10-12 20:57:30,818 | INFO     | task id: 46676269
[2025-10-12 16:58:03] 2025-10-12 20:57:30,818 | INFO     | errors: (none)
[2025-10-12 16:58:03] 2025-10-12 20:57:30,818 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 16:58:03] 2025-10-12 20:57:30,818 | INFO     | pilot state: finished 
[2025-10-12 16:58:03] 2025-10-12 20:57:30,818 | INFO     | transexitcode: 0
[2025-10-12 16:58:03] 2025-10-12 20:57:30,818 | INFO     | exeerrorcode: 0
[2025-10-12 16:58:03] 2025-10-12 20:57:30,818 | INFO     | exeerrordiag: 
[2025-10-12 16:58:03] 2025-10-12 20:57:30,818 | INFO     | exitcode: 0
[2025-10-12 16:58:03] 2025-10-12 20:57:30,818 | INFO     | exitmsg: OK
[2025-10-12 16:58:03] 2025-10-12 20:57:30,818 | INFO     | cpuconsumptiontime: 24845 s
[2025-10-12 16:58:03] 2025-10-12 20:57:30,818 | INFO     | nevents: 400
[2025-10-12 16:58:03] 2025-10-12 20:57:30,818 | INFO     | neventsw: 0
[2025-10-12 16:58:03] 2025-10-12 20:57:30,818 | INFO     | pid: 105727
[2025-10-12 16:58:03] 2025-10-12 20:57:30,818 | INFO     | pgrp: 105727
[2025-10-12 16:58:03] 2025-10-12 20:57:30,818 | INFO     | corecount: 8
[2025-10-12 16:58:03] 2025-10-12 20:57:30,818 | INFO     | event service: False
[2025-10-12 16:58:03] 2025-10-12 20:57:30,818 | INFO     | sizes: {0: 2348856, 11: 2348856, 16: 2349146, 21: 2349174, 4257: 2375336, 4260: 2384334, 4263: 2384518, 4280: 2384712}
[2025-10-12 16:58:03] 2025-10-12 20:57:30,818 | INFO     | --------------------------------------------------
[2025-10-12 16:58:03] 2025-10-12 20:57:30,819 | INFO     | 
[2025-10-12 16:58:03] 2025-10-12 20:57:30,819 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-10-12 16:58:03] 2025-10-12 20:57:30,877 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 16:58:03] 2025-10-12 20:57:30,878 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 16:58:03] 2025-10-12 20:57:30,878 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 16:58:03] 2025-10-12 20:57:30,878 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 16:58:03] 2025-10-12 20:57:30,878 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 16:58:03] 2025-10-12 20:57:30,878 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 16:58:03] 2025-10-12 20:57:30,878 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 16:58:03] 2025-10-12 20:57:30,878 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 16:58:03] 2025-10-12 20:57:30,878 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 16:58:03] 2025-10-12 20:57:30,878 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 16:58:03] 2025-10-12 20:57:30,878 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 16:58:03] 2025-10-12 20:57:30,878 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 16:58:03] 2025-10-12 20:57:30,878 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 16:58:03] 2025-10-12 20:57:30,878 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 16:58:03] 2025-10-12 20:57:30,878 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 16:58:03] 2025-10-12 20:57:30,878 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 16:58:03] 2025-10-12 20:57:30,878 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 16:58:03] 2025-10-12 20:57:30,878 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 16:58:03] 2025-10-12 20:57:30,878 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 16:58:03] 2025-10-12 20:57:30,878 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 16:58:03] 2025-10-12 20:57:30,879 | INFO     | job 6840225666 has completed (purged errors)
[2025-10-12 16:58:03] 2025-10-12 20:57:30,879 | INFO     | overall cleanup function is called
[2025-10-12 16:58:03] 2025-10-12 20:57:31,886 | INFO     | --- collectZombieJob: --- 10, [105727]
[2025-10-12 16:58:03] 2025-10-12 20:57:31,887 | INFO     | zombie collector waiting for pid 105727
[2025-10-12 16:58:03] 2025-10-12 20:57:31,887 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 16:58:03] 2025-10-12 20:57:31,887 | INFO     | collected zombie processes
[2025-10-12 16:58:03] 2025-10-12 20:57:31,887 | INFO     | will attempt to kill all subprocesses of pid=105727
[2025-10-12 16:58:03] 2025-10-12 20:57:32,306 | INFO     | process IDs to be killed: [105727] (in reverse order)
[2025-10-12 16:58:03] 2025-10-12 20:57:32,495 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 16:58:03] 2025-10-12 20:57:32,495 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 16:58:03] 2025-10-12 20:57:32,529 | INFO     | did not find any defunct processes belonging to 105727
[2025-10-12 16:58:03] 2025-10-12 20:57:32,550 | INFO     | did not find any defunct processes belonging to 105727
[2025-10-12 16:58:03] 2025-10-12 20:57:32,550 | INFO     | ready for new job
[2025-10-12 16:58:03] 2025-10-12 20:57:32,550 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 16:58:03] 2025-10-12 20:57:32,552 | INFO     | ***************************************
[2025-10-12 16:58:03] 2025-10-12 20:57:32,552 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 16:58:03] 2025-10-12 20:57:32,552 | INFO     | ***************************************
[2025-10-12 16:58:03] 2025-10-12 20:57:32,552 | INFO     | 
[2025-10-12 16:58:03] 2025-10-12 20:57:32,557 | INFO     | architecture information:
[2025-10-12 16:58:03] 2025-10-12 20:57:32,557 | INFO     | executing command: cat /etc/os-release
[2025-10-12 16:58:03] 2025-10-12 20:57:32,572 | INFO     | cat /etc/os-release:
[2025-10-12 16:58:03] NAME="CentOS Linux"
[2025-10-12 16:58:03] VERSION="7 (Core)"
[2025-10-12 16:58:03] ID="centos"
[2025-10-12 16:58:03] ID_LIKE="rhel fedora"
[2025-10-12 16:58:03] VERSION_ID="7"
[2025-10-12 16:58:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 16:58:03] ANSI_COLOR="0;31"
[2025-10-12 16:58:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 16:58:03] HOME_URL="https://www.centos.org/"
[2025-10-12 16:58:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 16:58:03] 
[2025-10-12 16:58:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 16:58:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 16:58:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 16:58:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 16:58:03] 
[2025-10-12 16:58:03] 2025-10-12 20:57:32,572 | INFO     | ***************************************
[2025-10-12 16:58:03] 2025-10-12 20:57:33,076 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-10-12 16:58:03] 2025-10-12 20:57:33,109 | INFO     | sufficient remaining disk space (169890283520 B)
[2025-10-12 16:58:03] 2025-10-12 20:57:33,109 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 16:58:03] 2025-10-12 20:57:33,109 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 16:58:03] 2025-10-12 20:57:33,109 | INFO     | update_server=False
[2025-10-12 16:58:03] 2025-10-12 20:57:33,109 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 16:58:03] 2025-10-12 20:57:33,112 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:58:03] 2025-10-12 20:57:33,113 | INFO     | aborting loop
[2025-10-12 16:58:03] 2025-10-12 20:57:33,199 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 16:58:03] 2025-10-12 20:57:33,536 | INFO     | all payload control threads have been joined
[2025-10-12 16:58:03] 2025-10-12 20:57:33,834 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 16:58:03] 2025-10-12 20:57:34,115 | INFO     | [job] retrieve thread has finished
[2025-10-12 16:58:03] 2025-10-12 20:57:34,117 | INFO     | [job] job monitor thread has finished
[2025-10-12 16:58:03] 2025-10-12 20:57:34,135 | INFO     | all data control threads have been joined
[2025-10-12 16:58:03] 2025-10-12 20:57:34,151 | INFO     | [job] validate thread has finished
[2025-10-12 16:58:03] 2025-10-12 20:57:34,316 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 16:58:03] 2025-10-12 20:57:34,317 | INFO     | all job control threads have been joined
[2025-10-12 16:58:03] 2025-10-12 20:57:34,443 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 16:58:03] 2025-10-12 20:57:34,542 | INFO     | [payload] control thread has finished
[2025-10-12 16:58:03] 2025-10-12 20:57:34,608 | INFO     | [payload] failed_post thread has finished
[2025-10-12 16:58:03] 2025-10-12 20:57:34,761 | INFO     | [data] copytool_in thread has finished
[2025-10-12 16:58:03] 2025-10-12 20:57:35,120 | INFO     | [payload] validate_post thread has finished
[2025-10-12 16:58:03] 2025-10-12 20:57:35,141 | INFO     | [data] control thread has finished
[2025-10-12 16:58:03] 2025-10-12 20:57:35,189 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 16:58:03] 2025-10-12 20:57:35,322 | INFO     | [job] control thread has finished
[2025-10-12 16:58:03] 2025-10-12 20:57:35,605 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 16:58:03] 2025-10-12 20:57:35,841 | INFO     | [data] copytool_out thread has finished
[2025-10-12 16:58:03] 2025-10-12 20:57:35,848 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:58:03] 2025-10-12 20:57:36,854 | INFO     | [job] queue monitor thread has finished
[2025-10-12 16:58:03] 2025-10-12 20:57:37,208 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 16:58:03] 2025-10-12 20:57:38,319 | INFO     | [monitor] cgroup control has ended
[2025-10-12 16:58:03] 2025-10-12 20:57:38,551 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140423282845504)>', '<ExcThread(monitor, started 140422806497024)>']
[2025-10-12 16:58:03] 2025-10-12 20:57:43,577 | INFO     | all workflow threads have been joined
[2025-10-12 16:58:03] 2025-10-12 20:57:43,578 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 16:58:03] 2025-10-12 20:57:43,578 | INFO     | traces error code: 0
[2025-10-12 16:58:03] 2025-10-12 20:57:43,578 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 16:58:03] 2025-10-12 20:58:02,805 | INFO     | PID=98845 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 16:58:03] 2025-10-12 20:58:02,805 | INFO     | .. there are 23 such processes running
[2025-10-12 16:58:03] 2025-10-12 20:58:02,806 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 16:58:03] 2025-10-12 20:58:02,806 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 16:58:03] 2025-10-12 20:58:02,806 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 16:58:03] 2025-10-12 20:58:02,806 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 16:58:03] 2025-10-12 20:58:02,806 | INFO     | [monitor] control thread has ended
[2025-10-12 16:58:03] 2025-10-12 20:58:03,042 [wrapper] ==== pilot stdout END ====
[2025-10-12 16:58:03] 2025-10-12 20:58:03,062 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 16:58:03] 2025-10-12 20:58:03,075 [wrapper] pilotpid: 98845
[2025-10-12 16:58:03] 2025-10-12 20:58:03,084 [wrapper] Pilot exit status: 0
[2025-10-12 16:58:03] 2025-10-12 20:58:03,112 [wrapper] pandaids: 6840225666
[2025-10-12 16:58:03] 2025-10-12 20:58:03,231 [wrapper] cleanup supervisor_pilot  315717 98846
[2025-10-12 16:58:03] 2025-10-12 20:58:03,247 [wrapper] Test setup, not cleaning
[2025-10-12 16:58:03] 2025-10-12 20:58:03,250 [wrapper] apfmon messages muted
[2025-10-12 16:58:03] 2025-10-12 20:58:03,255 [wrapper] ==== wrapper stdout END ====
[2025-10-12 16:58:03] 2025-10-12 20:58:03,258 [wrapper] ==== wrapper stderr END ====
[2025-10-12 16:58:03]  *** Error codes and diagnostics ***
[2025-10-12 16:58:03]     "exeErrorCode": 0,
[2025-10-12 16:58:03]     "exeErrorDiag": "",
[2025-10-12 16:58:03]     "pilotErrorCode": 0,
[2025-10-12 16:58:03]     "pilotErrorDiag": "",
[2025-10-12 16:58:03]  *** Listing of results directory ***
[2025-10-12 16:58:03] total 412124
[2025-10-12 16:58:03] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 11:00 pilot3.tar.gz
[2025-10-12 16:58:03] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 11:51 queuedata.json
[2025-10-12 16:58:03] -rwx------. 1 boincer umatlas     36292 Oct 12 11:51 runpilot2-wrapper.sh
[2025-10-12 16:58:03] -rw-r--r--. 1 boincer umatlas       100 Oct 12 15:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 16:58:03] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 15:44 run_atlas
[2025-10-12 16:58:03] -rw-r--r--. 1 boincer umatlas       105 Oct 12 15:44 job.xml
[2025-10-12 16:58:03] -rw-r--r--. 2 boincer umatlas 223383259 Oct 12 15:44 EVNT.46676267._004591.pool.root.1
[2025-10-12 16:58:03] -rw-r--r--. 2 boincer umatlas    569685 Oct 12 15:44 input.tar.gz
[2025-10-12 16:58:03] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 15:44 start_atlas.sh
[2025-10-12 16:58:03] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 15:44 shared
[2025-10-12 16:58:03] -rw-r--r--. 1 boincer umatlas         0 Oct 12 15:44 boinc_lockfile
[2025-10-12 16:58:03] -rw-r--r--. 1 boincer umatlas      2549 Oct 12 15:44 pandaJob.out
[2025-10-12 16:58:03] -rw-------. 1 boincer umatlas    975536 Oct 12 15:45 agis_schedconf.cvmfs.json
[2025-10-12 16:58:03] -rw-------. 1 boincer umatlas   1560580 Oct 12 15:45 agis_ddmendpoints.agis.ALL.json
[2025-10-12 16:58:03] drwx------. 5 boincer umatlas      4096 Oct 12 15:45 pilot3
[2025-10-12 16:58:03] -rw-r--r--. 1 boincer umatlas       530 Oct 12 16:56 boinc_task_state.xml
[2025-10-12 16:58:03] -rw-------. 1 boincer umatlas 192850158 Oct 12 16:56 HITS.46676269._082733.pool.root.1
[2025-10-12 16:58:03] -rw-------. 1 boincer umatlas      1068 Oct 12 16:57 memory_monitor_summary.json
[2025-10-12 16:58:03] -rw-r--r--. 1 boincer umatlas      7172 Oct 12 16:57 init_data.xml
[2025-10-12 16:58:03] -rw-------. 1 boincer umatlas    329287 Oct 12 16:57 log.46676269._082733.job.log.tgz.1
[2025-10-12 16:58:03] -rw-------. 1 boincer umatlas      7820 Oct 12 16:57 heartbeat.json
[2025-10-12 16:58:03] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 16:58 boinc_mmap_file
[2025-10-12 16:58:03] -rw-------. 1 boincer umatlas        95 Oct 12 16:58 pilot_heartbeat.json
[2025-10-12 16:58:03] -rw-------. 1 boincer umatlas       821 Oct 12 16:58 pilotlog.txt
[2025-10-12 16:58:03] -rw-r--r--. 1 boincer umatlas        27 Oct 12 16:58 wrapper_checkpoint.txt
[2025-10-12 16:58:03] -rw-------. 1 boincer umatlas    613299 Oct 12 16:58 log.46676269._082733.job.log.1
[2025-10-12 16:58:03] -rw-------. 1 boincer umatlas       357 Oct 12 16:58 output.list
[2025-10-12 16:58:03] -rw-r--r--. 1 boincer umatlas       620 Oct 12 16:58 runtime_log
[2025-10-12 16:58:03] -rw-------. 1 boincer umatlas    962560 Oct 12 16:58 result.tar.gz
[2025-10-12 16:58:03] -rw-r--r--. 1 boincer umatlas      8703 Oct 12 16:58 runtime_log.err
[2025-10-12 16:58:03] -rw-------. 1 boincer umatlas       657 Oct 12 16:58 2jfKDmWXDS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmHMUMDmB921pm.diag
[2025-10-12 16:58:03] -rw-r--r--. 1 boincer umatlas     22184 Oct 12 16:58 stderr.txt
[2025-10-12 16:58:03] HITS file was successfully produced:
[2025-10-12 16:58:03] -rw-------. 1 boincer umatlas 192850158 Oct 12 16:56 shared/HITS.pool.root.1
[2025-10-12 16:58:03]  *** Contents of shared directory: ***
[2025-10-12 16:58:03] total 408000
[2025-10-12 16:58:03] -rw-r--r--. 2 boincer umatlas 223383259 Oct 12 15:44 ATLAS.root_0
[2025-10-12 16:58:03] -rw-r--r--. 2 boincer umatlas    569685 Oct 12 15:44 input.tar.gz
[2025-10-12 16:58:03] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 15:44 start_atlas.sh
[2025-10-12 16:58:03] -rw-------. 1 boincer umatlas 192850158 Oct 12 16:56 HITS.pool.root.1
[2025-10-12 16:58:03] -rw-------. 1 boincer umatlas    962560 Oct 12 16:58 result.tar.gz
16:58:04 (94777): run_atlas exited; CPU time 24954.707778
16:58:04 (94777): called boinc_finish(0)

</stderr_txt>
]]>

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