Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-13 11:59:01 (32648): vboxwrapper version 26210
2025-10-13 11:59:01 (32648): BOINC client version: 7.24.1
2025-10-13 11:59:02 (32648): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2025-10-13 11:59:02 (32648): Successfully copied 'init_data.xml' to the shared directory.
2025-10-13 11:59:02 (32648): Create VM. (boinc_c81276f76741cb0b, slot#1)
2025-10-13 11:59:03 (32648): Setting Memory Size for VM. (4800MB)
2025-10-13 11:59:03 (32648): Setting CPU Count for VM. (8)
2025-10-13 11:59:03 (32648): Setting Chipset Options for VM.
2025-10-13 11:59:04 (32648): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-13 11:59:04 (32648): Setting Boot Options for VM.
2025-10-13 11:59:04 (32648): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-13 11:59:05 (32648): Enabling VM Network Access.
2025-10-13 11:59:05 (32648): Disabling USB Support for VM.
2025-10-13 11:59:05 (32648): Disabling COM Port Support for VM.
2025-10-13 11:59:05 (32648): Disabling LPT Port Support for VM.
2025-10-13 11:59:06 (32648): Disabling Audio Support for VM.
2025-10-13 11:59:06 (32648): Disabling Clipboard Support for VM.
2025-10-13 11:59:06 (32648): Disabling Drag and Drop Support for VM.
2025-10-13 11:59:06 (32648): Adding storage controller(s) to VM.
2025-10-13 11:59:07 (32648): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-13 11:59:09 (32648): Adding VirtualBox Guest Additions to VM.
2025-10-13 11:59:09 (32648): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-13 11:59:09 (32648): forwarding host port 62676 to guest port 80
2025-10-13 11:59:10 (32648): Enabling remote desktop for VM.
2025-10-13 11:59:10 (32648): Required extension pack not installed, remote desktop not enabled.
2025-10-13 11:59:10 (32648): Enabling shared directory for VM.
2025-10-13 11:59:10 (32648): Starting VM using VBoxManage interface. (boinc_c81276f76741cb0b, slot#1)
2025-10-13 11:59:16 (32648): Successfully started VM. (PID = '25056')
2025-10-13 11:59:16 (32648): Reporting VM Process ID to BOINC.
2025-10-13 11:59:16 (32648): Guest Log: BIOS: VirtualBox 7.0.20
2025-10-13 11:59:16 (32648): Guest Log: CPUID EDX: 0x178bfbff
2025-10-13 11:59:16 (32648): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-13 11:59:16 (32648): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-13 11:59:16 (32648): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-13 11:59:16 (32648): Detected: Web Application Enabled (http://localhost:62676)
2025-10-13 11:59:16 (32648): Preference change detected
2025-10-13 11:59:16 (32648): Setting CPU throttle for VM. (75%)
2025-10-13 11:59:17 (32648): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-13 11:59:18 (32648): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-13 11:59:18 (32648): Guest Log: BIOS: Booting from Hard Disk...
2025-10-13 11:59:22 (32648): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-13 11:59:22 (32648): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-13 11:59:22 (32648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-13 11:59:34 (32648): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-13 11:59:34 (32648): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-13 12:00:13 (32648): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-13 12:00:13 (32648): Guest Log: 00:00:00.000141 main     Log opened 2025-10-13T12:00:11.463451000Z
2025-10-13 12:00:13 (32648): Guest Log: 00:00:00.000268 main     OS Product: Linux
2025-10-13 12:00:13 (32648): Guest Log: 00:00:00.000307 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-13 12:00:13 (32648): Guest Log: 00:00:00.000338 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-13 12:00:13 (32648): Guest Log: 00:00:00.000369 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-13 12:00:13 (32648): Guest Log: 00:00:00.000370 main     Process ID: 1395
2025-10-13 12:00:13 (32648): Guest Log: 00:00:00.000370 main     Package type: LINUX_64BITS_GENERIC
2025-10-13 12:00:13 (32648): Guest Log: 00:00:00.002350 main     5.2.32 r132073 started. Verbose level = 0
2025-10-13 12:00:14 (32648): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-13 12:00:14 (32648): Guest Log: [INFO] Mounting shared directory
2025-10-13 12:00:14 (32648): Guest Log: [INFO] Checking for init_data.xml
2025-10-13 12:00:18 (32648): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-13 12:00:18 (32648): Guest Log: [INFO] Detected branch: prod
2025-10-13 12:00:18 (32648): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-13 12:00:18 (32648): Guest Log: Copying input files
2025-10-13 12:00:20 (32648): Guest Log: Copied input files into RunAtlas.
2025-10-13 12:00:20 (32648): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-13 12:00:20 (32648): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-13 12:00:20 (32648): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-13 12:00:20 (32648): Guest Log: Further information can be found at the LHC@home message board.
2025-10-13 12:00:23 (32648): Guest Log: 00:00:10.004979 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 787 753 562 000ns (GuestNow=1 760 346 023 713 836 000 ns GuestLast=1 760 356 811 467 398 000 ns fSetTimeLastLoop=true )
2025-10-13 12:00:28 (32648): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-13 12:00:29 (32648): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-13 12:00:29 (32648): Guest Log: 2.6.3.0 1671 0 30128 151654 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-13 12:00:33 (32648): Guest Log: copied the webapp to /var/www
2025-10-13 12:00:33 (32648): Guest Log: ATHENA_PROC_NUMBER=8
2025-10-13 12:00:33 (32648): Guest Log: ATHENA_CORE_NUMBER=8
2025-10-13 12:00:34 (32648): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-13 12:00:34 (32648): Guest Log:  *** Starting ATLAS job. (PandaID=6840224872 taskID=46676269) ***
2025-10-13 13:39:21 (32648): Status Report: Elapsed Time: '6000.000000'
2025-10-13 13:39:21 (32648): Status Report: CPU Time: '31878.078125'
2025-10-13 14:43:45 (32648): Guest Log:  *** Job finished ***
2025-10-13 14:43:45 (32648): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-13 14:43:45 (32648): Guest Log: 2025-10-13 11:43:30,119 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-13 14:43:45 (32648): Guest Log: 2025-10-13 11:43:30,119 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-13 14:43:45 (32648): Guest Log: 2025-10-13 11:43:37,832 | INFO     | [monitor] cgroup control has ended
2025-10-13 14:43:45 (32648): Guest Log: 2025-10-13 11:43:37,911 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140461381797696)>', '<ExcThread(monitor, started 140460723005184)>']
2025-10-13 14:43:45 (32648): Guest Log: 2025-10-13 11:43:38,228 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-13 14:43:45 (32648): Guest Log: 2025-10-13 11:43:38,228 | INFO     | [monitor] control thread has ended
2025-10-13 14:43:45 (32648): Guest Log: 2025-10-13 11:43:42,920 | INFO     | all workflow threads have been joined
2025-10-13 14:43:45 (32648): Guest Log: 2025-10-13 11:43:42,920 | INFO     | end of generic workflow (traces error code: 0)
2025-10-13 14:43:45 (32648): Guest Log: 2025-10-13 11:43:42,920 | INFO     | traces error code: 0
2025-10-13 14:43:45 (32648): Guest Log: 2025-10-13 11:43:42,921 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-13 14:43:45 (32648): Guest Log: 2025-10-13 11:43:43,049 [wrapper] ==== pilot stdout END ====
2025-10-13 14:43:45 (32648): Guest Log: 2025-10-13 11:43:43,054 [wrapper] ==== wrapper stdout RESUME ====
2025-10-13 14:43:45 (32648): Guest Log: 2025-10-13 11:43:43,060 [wrapper] pilotpid: 6104
2025-10-13 14:43:45 (32648): Guest Log: 2025-10-13 11:43:43,066 [wrapper] Pilot exit status: 0
2025-10-13 14:43:45 (32648): Guest Log: 2025-10-13 11:43:43,183 [wrapper] pandaids: 6840224872
2025-10-13 14:43:45 (32648): Guest Log: 2025-10-13 11:43:43,219 [wrapper] cleanup supervisor_pilot  5132 6105
2025-10-13 14:43:45 (32648): Guest Log: 2025-10-13 11:43:43,227 [wrapper] Test setup, not cleaning
2025-10-13 14:43:45 (32648): Guest Log: 2025-10-13 11:43:43,233 [wrapper] apfmon messages muted
2025-10-13 14:43:45 (32648): Guest Log: 2025-10-13 11:43:43,238 [wrapper] ==== wrapper stdout END ====
2025-10-13 14:43:45 (32648): Guest Log: 2025-10-13 11:43:43,243 [wrapper] ==== wrapper stderr END ====
2025-10-13 14:43:45 (32648): Guest Log:  *** Error codes and diagnostics ***
2025-10-13 14:43:45 (32648): Guest Log:     "exeErrorCode": 0,
2025-10-13 14:43:45 (32648): Guest Log:     "exeErrorDiag": "",
2025-10-13 14:43:45 (32648): Guest Log:     "pilotErrorCode": 0,
2025-10-13 14:43:45 (32648): Guest Log:     "pilotErrorDiag": "",
2025-10-13 14:43:45 (32648): Guest Log:  *** Listing of results directory ***
2025-10-13 14:43:46 (32648): Guest Log: total 191964
2025-10-13 14:43:46 (32648): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 12 15:00 pilot3.tar.gz
2025-10-13 14:43:46 (32648): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 12 15:25 queuedata.json
2025-10-13 14:43:46 (32648): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 12 15:26 runpilot2-wrapper.sh
2025-10-13 14:43:46 (32648): Guest Log: -rwxr-xr-x. 1 atlas atlas      9061 Oct 13 09:00 init_data.xml
2025-10-13 14:43:46 (32648): Guest Log: -rwxr-xr-x. 1 atlas atlas    569680 Oct 13 09:00 input.tar.gz
2025-10-13 14:43:46 (32648): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 13 09:00 start_atlas.sh
2025-10-13 14:43:46 (32648): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 13 09:00 EVNT.46676267._004569.pool.root.1 -> /data/./ATLAS.root_0
2025-10-13 14:43:46 (32648): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Oct 13 09:00 pandaJob.out
2025-10-13 14:43:46 (32648): Guest Log: -rw-------. 1 atlas atlas    972857 Oct 13 09:01 agis_schedconf.cvmfs.json
2025-10-13 14:43:46 (32648): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 13 09:01 agis_ddmendpoints.agis.ALL.json
2025-10-13 14:43:46 (32648): Guest Log: drwx------. 5 atlas atlas      4096 Oct 13 09:01 pilot3
2025-10-13 14:43:46 (32648): Guest Log: -rw-------. 1 atlas atlas 189581508 Oct 13 11:42 HITS.46676269._082167.pool.root.1
2025-10-13 14:43:46 (32648): Guest Log: -rw-------. 1 atlas atlas      1031 Oct 13 11:42 memory_monitor_summary.json
2025-10-13 14:43:46 (32648): Guest Log: -rw-------. 1 atlas atlas    377028 Oct 13 11:42 log.46676269._082167.job.log.tgz.1
2025-10-13 14:43:46 (32648): Guest Log: -rw-------. 1 atlas atlas        95 Oct 13 11:42 pilot_heartbeat.json
2025-10-13 14:43:46 (32648): Guest Log: -rw-------. 1 atlas atlas      7825 Oct 13 11:42 heartbeat.json
2025-10-13 14:43:46 (32648): Guest Log: -rw-------. 1 atlas atlas      4805 Oct 13 11:43 pilotlog.txt
2025-10-13 14:43:46 (32648): Guest Log: -rw-------. 1 atlas atlas   1201502 Oct 13 11:43 log.46676269._082167.job.log.1
2025-10-13 14:43:46 (32648): Guest Log: -rw-------. 1 atlas atlas       357 Oct 13 11:43 output.list
2025-10-13 14:43:46 (32648): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 13 11:43 runtime_log
2025-10-13 14:43:46 (32648): Guest Log: -rw-------. 1 atlas atlas   1597440 Oct 13 11:43 result.tar.gz
2025-10-13 14:43:46 (32648): Guest Log: -rw-------. 1 atlas atlas       655 Oct 13 11:43 skgMDmI9CS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmjHUMDmcHYqRn.diag
2025-10-13 14:43:46 (32648): Guest Log: -rw-r--r--. 1 atlas atlas      8636 Oct 13 11:43 runtime_log.err
2025-10-13 14:43:46 (32648): Guest Log: Looking for outputfile HITS.46676269._082167.pool.root.1
2025-10-13 14:43:46 (32648): Guest Log: HITS file was successfully produced
2025-10-13 14:43:46 (32648): Guest Log: -rw-------. 1 atlas atlas 189581508 Oct 13 11:42 /home/atlas/RunAtlas/HITS.46676269._082167.pool.root.1
2025-10-13 14:43:47 (32648): Guest Log: Successfully finished the ATLAS job!
2025-10-13 14:43:47 (32648): Guest Log: Copying the results back to the shared directory!
2025-10-13 14:43:47 (32648): Guest Log:  *** Contents of shared directory: ***
2025-10-13 14:43:47 (32648): Guest Log: total 403164
2025-10-13 14:43:47 (32648): Guest Log: -rwxrwxrwx. 1 root root 221053570 Oct 13 08:59 ATLAS.root_0
2025-10-13 14:43:47 (32648): Guest Log: -rwxrwxrwx. 1 root root 189581508 Oct 13 11:43 HITS.pool.root.1
2025-10-13 14:43:47 (32648): Guest Log: -rwxrwxrwx. 1 root root      9061 Oct 13 08:59 init_data.xml
2025-10-13 14:43:47 (32648): Guest Log: -rwxrwxrwx. 1 root root    569680 Oct 12 19:45 input.tar.gz
2025-10-13 14:43:47 (32648): Guest Log: -rwxrwxrwx. 1 root root   1597440 Oct 13 11:43 result.tar.gz
2025-10-13 14:43:47 (32648): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 12 19:45 start_atlas.sh
2025-10-13 14:43:47 (32648): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-13 14:43:47 (32648): VM Completion File Detected.
2025-10-13 14:43:47 (32648): Powering off VM.
2025-10-13 14:43:48 (32648): Successfully stopped VM.
2025-10-13 14:43:48 (32648): Deregistering VM. (boinc_c81276f76741cb0b, slot#1)
2025-10-13 14:43:48 (32648): Removing network bandwidth throttle group from VM.
2025-10-13 14:43:48 (32648): Removing VM from VirtualBox.
2025-10-13 14:43:54 (32648): called boinc_finish(0)

</stderr_txt>
]]>

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