Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:52:47 (1722049): wrapper (7.7.26015): starting
15:52:47 (1722049): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 15:52:47] Arguments: --nthreads 9
[2025-10-12 15:52:47] Threads: 9
[2025-10-12 15:52:47] Checking for CVMFS
[2025-10-12 15:52:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 15:52:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 15:52:47] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 15:52:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 15:52:48] 2.13.2.0 1101976 129707 288880 151635 1 271 21801617 32935937 21870 16776704 0 172056675 99.814 79321457 29197 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 15:52:48] CVMFS is ok
[2025-10-12 15:52:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 15:52:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 15:52:48] Further information can be found at the LHC@home message board.
[2025-10-12 15:52:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 15:52:48] Checking for apptainer binary...
[2025-10-12 15:52:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 15:52:48] Running /usr/bin/apptainer --version
[2025-10-12 15:52:48] apptainer version 1.4.3-1.el9
[2025-10-12 15:52:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 15:52:48] c-5-2.aglt2.org
[2025-10-12 15:52:48] apptainer works
[2025-10-12 15:52:48] Set ATHENA_PROC_NUMBER=9
[2025-10-12 15:52:48] Set ATHENA_CORE_NUMBER=9
[2025-10-12 15:52:48] Starting ATLAS job with PandaID=6840390596
[2025-10-12 15:52:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:30:09 (2606307): wrapper (7.7.26015): starting
20:30:09 (2606307): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 20:30:09] Arguments: --nthreads 8
[2025-10-12 20:30:09] Threads: 8
[2025-10-12 20:30:09] This job has been restarted, cleaning up previous attempt
[2025-10-12 20:30:09] Checking for CVMFS
[2025-10-12 20:30:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 20:30:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 20:30:10] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 20:30:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 20:30:11] 2.13.2.0 1101976 129984 294096 151642 0 382 24002126 32935936 25227 16776704 0 172849796 99.814 80110898 29177 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 20:30:11] CVMFS is ok
[2025-10-12 20:30:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 20:30:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 20:30:11] Further information can be found at the LHC@home message board.
[2025-10-12 20:30:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:30:11] Checking for apptainer binary...
[2025-10-12 20:30:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 20:30:11] Running /usr/bin/apptainer --version
[2025-10-12 20:30:11] apptainer version 1.4.3-1.el9
[2025-10-12 20:30:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:30:11] c-5-2.aglt2.org
[2025-10-12 20:30:11] apptainer works
[2025-10-12 20:30:11] Set ATHENA_PROC_NUMBER=8
[2025-10-12 20:30:11] Set ATHENA_CORE_NUMBER=8
[2025-10-12 20:30:12] Starting ATLAS job with PandaID=6840390596
[2025-10-12 20:30:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 06:50:10]  *** The last 200 lines of the pilot log: ***
[2025-10-13 06:50:10] 2025-10-13 08:17:08,127 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 06:50:10] 2025-10-13 08:17:08,127 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 06:50:10] 2025-10-13 08:17:08,143 | INFO     | fitting pss+swap vs Time
[2025-10-13 06:50:10] 2025-10-13 08:17:08,144 | INFO     | sum of square deviations: 29404013858.945236
[2025-10-13 06:50:10] 2025-10-13 08:17:08,153 | INFO     | sum of deviations: -115719839573.6601
[2025-10-13 06:50:10] 2025-10-13 08:17:08,158 | INFO     | mean x: 1760329407.7609649
[2025-10-13 06:50:10] 2025-10-13 08:17:08,158 | INFO     | mean y: 2119262.682017544
[2025-10-13 06:50:10] 2025-10-13 08:17:08,158 | INFO     | -- intersect: 6929916183.200886
[2025-10-13 06:50:10] 2025-10-13 08:17:08,158 | INFO     | intersect: 6929916183.200886
[2025-10-13 06:50:10] 2025-10-13 08:17:08,159 | INFO     | chi2: 6.098592111062804
[2025-10-13 06:50:10] 2025-10-13 08:17:08,160 | INFO     | sum of square deviations: 28447538916.9978
[2025-10-13 06:50:10] 2025-10-13 08:17:08,174 | INFO     | sum of deviations: 7313145352.317057
[2025-10-13 06:50:10] 2025-10-13 08:17:08,174 | INFO     | mean x: 1760329255.27051
[2025-10-13 06:50:10] 2025-10-13 08:17:08,174 | INFO     | mean y: 2138882.3170731706
[2025-10-13 06:50:10] 2025-10-13 08:17:08,175 | INFO     | -- intersect: -450397407.3525107
[2025-10-13 06:50:10] 2025-10-13 08:17:08,175 | INFO     | intersect: -450397407.3525107
[2025-10-13 06:50:10] 2025-10-13 08:17:08,175 | INFO     | chi2: 2.5661216568069647
[2025-10-13 06:50:10] 2025-10-13 08:17:08,176 | INFO     | current chi2=2.5661216568069647 (change=57.9227203578341 %)
[2025-10-13 06:50:10] 2025-10-13 08:17:08,176 | INFO     | sum of square deviations: 27511849744.28022
[2025-10-13 06:50:10] 2025-10-13 08:17:08,183 | INFO     | sum of deviations: 20900706405.809406
[2025-10-13 06:50:10] 2025-10-13 08:17:08,184 | INFO     | mean x: 1760329102.764574
[2025-10-13 06:50:10] 2025-10-13 08:17:08,184 | INFO     | mean y: 2141099.760089686
[2025-10-13 06:50:10] 2025-10-13 08:17:08,184 | INFO     | -- intersect: -1335177986.2506003
[2025-10-13 06:50:10] 2025-10-13 08:17:08,184 | INFO     | intersect: -1335177986.2506003
[2025-10-13 06:50:10] 2025-10-13 08:17:08,192 | INFO     | chi2: 2.526458988048824
[2025-10-13 06:50:10] 2025-10-13 08:17:08,192 | INFO     | current chi2=2.526458988048824 (change=1.5456269835426721 %)
[2025-10-13 06:50:10] 2025-10-13 08:17:08,192 | INFO     | right removable region: 445
[2025-10-13 06:50:10] 2025-10-13 08:17:08,193 | INFO     | sum of square deviations: 28447243795.90694
[2025-10-13 06:50:10] 2025-10-13 08:17:08,202 | INFO     | sum of deviations: -198575317387.62527
[2025-10-13 06:50:10] 2025-10-13 08:17:08,202 | INFO     | mean x: 1760329560.2749445
[2025-10-13 06:50:10] 2025-10-13 08:17:08,202 | INFO     | mean y: 2132436.9889135254
[2025-10-13 06:50:10] 2025-10-13 08:17:08,202 | INFO     | -- intersect: 12290071600.666739
[2025-10-13 06:50:10] 2025-10-13 08:17:08,202 | INFO     | intersect: 12290071600.666739
[2025-10-13 06:50:10] 2025-10-13 08:17:08,203 | INFO     | chi2: 4.166651570858287
[2025-10-13 06:50:10] 2025-10-13 08:17:08,203 | INFO     | current chi2=4.166651570858287 (change=31.67846783358393 %)
[2025-10-13 06:50:10] 2025-10-13 08:17:08,204 | INFO     | sum of square deviations: 27511450870.18843
[2025-10-13 06:50:10] 2025-10-13 08:17:08,213 | INFO     | sum of deviations: -222622490044.65015
[2025-10-13 06:50:10] 2025-10-13 08:17:08,217 | INFO     | mean x: 1760329712.7892377
[2025-10-13 06:50:10] 2025-10-13 08:17:08,217 | INFO     | mean y: 2136350.822869955
[2025-10-13 06:50:10] 2025-10-13 08:17:08,217 | INFO     | -- intersect: 14246713483.80778
[2025-10-13 06:50:10] 2025-10-13 08:17:08,217 | INFO     | intersect: 14246713483.80778
[2025-10-13 06:50:10] 2025-10-13 08:17:08,218 | INFO     | chi2: 3.9622978354254403
[2025-10-13 06:50:10] 2025-10-13 08:17:08,218 | INFO     | current chi2=3.9622978354254403 (change=4.904507419389322 %)
[2025-10-13 06:50:10] 2025-10-13 08:17:08,218 | INFO     | left removable region: 20
[2025-10-13 06:50:10] 2025-10-13 08:17:08,219 | INFO     | sum of square deviations: 23805581977.84464
[2025-10-13 06:50:10] 2025-10-13 08:17:08,229 | INFO     | sum of deviations: -88214651015.08704
[2025-10-13 06:50:10] 2025-10-13 08:17:08,229 | INFO     | mean x: 1760329682.3035295
[2025-10-13 06:50:10] 2025-10-13 08:17:08,229 | INFO     | mean y: 2160018.1247058823
[2025-10-13 06:50:10] 2025-10-13 08:17:08,229 | INFO     | -- intersect: 6525288448.273028
[2025-10-13 06:50:10] 2025-10-13 08:17:08,229 | INFO     | intersect: 6525288448.273028
[2025-10-13 06:50:10] 2025-10-13 08:17:08,234 | INFO     | chi2: 0.28357313056615685
[2025-10-13 06:50:10] 2025-10-13 08:17:08,234 | INFO     | -- intersect: 6525288448.273028
[2025-10-13 06:50:10] 2025-10-13 08:17:08,235 | INFO     | current memory leak: -3.71 B/s (using 425 data points, chi2=0.28)
[2025-10-13 06:50:10] 2025-10-13 08:17:08,235 | INFO     | could have reported an average CPU frequency of 2600 MHz (18 samples)
[2025-10-13 06:50:10] 2025-10-13 08:17:08,236 | INFO     | ..............................
[2025-10-13 06:50:10] 2025-10-13 08:17:08,236 | INFO     | . Timing measurements:
[2025-10-13 06:50:10] 2025-10-13 08:17:08,236 | INFO     | . get job = 0 s
[2025-10-13 06:50:10] 2025-10-13 08:17:08,236 | INFO     | . initial setup = 3 s
[2025-10-13 06:50:10] 2025-10-13 08:17:08,236 | INFO     | . payload setup = 21 s
[2025-10-13 06:50:10] 2025-10-13 08:17:08,236 | INFO     | . stage-in = 0 s
[2025-10-13 06:50:10] 2025-10-13 08:17:08,236 | INFO     | . payload execution = 27824 s
[2025-10-13 06:50:10] 2025-10-13 08:17:08,236 | INFO     | . stage-out = 15 s
[2025-10-13 06:50:10] 2025-10-13 08:17:08,236 | INFO     | . log creation = 1 s
[2025-10-13 06:50:10] 2025-10-13 08:17:08,237 | INFO     | ..............................
[2025-10-13 06:50:10] 2025-10-13 08:17:08,296 | INFO     | time since job start (27984s) is within the limit (172800.0s)
[2025-10-13 06:50:10] 2025-10-13 08:17:08,500 | INFO     | 
[2025-10-13 06:50:10] 2025-10-13 08:17:08,500 | INFO     | job summary report
[2025-10-13 06:50:10] 2025-10-13 08:17:08,500 | INFO     | --------------------------------------------------
[2025-10-13 06:50:10] 2025-10-13 08:17:08,500 | INFO     | PanDA job id: 6840390596
[2025-10-13 06:50:10] 2025-10-13 08:17:08,500 | INFO     | task id: 46676269
[2025-10-13 06:50:10] 2025-10-13 08:17:08,501 | INFO     | errors: (none)
[2025-10-13 06:50:10] 2025-10-13 08:17:08,501 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 06:50:10] 2025-10-13 08:17:08,501 | INFO     | pilot state: finished 
[2025-10-13 06:50:10] 2025-10-13 08:17:08,501 | INFO     | transexitcode: 0
[2025-10-13 06:50:10] 2025-10-13 08:17:08,501 | INFO     | exeerrorcode: 0
[2025-10-13 06:50:10] 2025-10-13 08:17:08,501 | INFO     | exeerrordiag: 
[2025-10-13 06:50:10] 2025-10-13 08:17:08,501 | INFO     | exitcode: 0
[2025-10-13 06:50:10] 2025-10-13 08:17:08,501 | INFO     | exitmsg: OK
[2025-10-13 06:50:10] 2025-10-13 08:17:08,501 | INFO     | cpuconsumptiontime: 49852 s
[2025-10-13 06:50:10] 2025-10-13 08:17:08,501 | INFO     | nevents: 400
[2025-10-13 06:50:10] 2025-10-13 08:17:08,502 | INFO     | neventsw: 0
[2025-10-13 06:50:10] 2025-10-13 08:17:08,502 | INFO     | pid: 2637193
[2025-10-13 06:50:10] 2025-10-13 08:17:08,502 | INFO     | pgrp: 2637193
[2025-10-13 06:50:10] 2025-10-13 08:17:08,502 | INFO     | corecount: 8
[2025-10-13 06:50:10] 2025-10-13 08:17:08,502 | INFO     | event service: False
[2025-10-13 06:50:10] 2025-10-13 08:17:08,502 | INFO     | sizes: {0: 2348686, 1: 2348885, 13: 2348885, 17: 2349203, 23: 2349231, 27854: 2385768, 27871: 2394794, 27874: 2394850, 27945: 2395044}
[2025-10-13 06:50:10] 2025-10-13 08:17:08,502 | INFO     | --------------------------------------------------
[2025-10-13 06:50:10] 2025-10-13 08:17:08,502 | INFO     | 
[2025-10-13 06:50:10] 2025-10-13 08:17:08,502 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 06:50:10] 2025-10-13 08:17:09,028 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 06:50:10] 2025-10-13 08:17:09,028 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 06:50:10] 2025-10-13 08:17:09,029 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 06:50:10] 2025-10-13 08:17:09,029 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 06:50:10] 2025-10-13 08:17:09,036 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 06:50:10] 2025-10-13 08:17:09,036 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 06:50:10] 2025-10-13 08:17:09,036 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 06:50:10] 2025-10-13 08:17:09,037 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 06:50:10] 2025-10-13 08:17:09,037 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 06:50:10] 2025-10-13 08:17:09,037 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 06:50:10] 2025-10-13 08:17:09,037 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 06:50:10] 2025-10-13 08:17:09,037 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 06:50:10] 2025-10-13 08:17:09,037 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 06:50:10] 2025-10-13 08:17:09,037 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 06:50:10] 2025-10-13 08:17:09,037 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 06:50:10] 2025-10-13 08:17:09,037 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 06:50:10] 2025-10-13 08:17:09,037 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 06:50:10] 2025-10-13 08:17:09,037 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 06:50:10] 2025-10-13 08:17:09,038 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 06:50:10] 2025-10-13 08:17:09,038 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 06:50:10] 2025-10-13 08:17:09,038 | INFO     | job 6840390596 has completed (purged errors)
[2025-10-13 06:50:10] 2025-10-13 08:17:09,038 | INFO     | overall cleanup function is called
[2025-10-13 06:50:10] 2025-10-13 08:17:10,087 | INFO     | --- collectZombieJob: --- 10, [2637193]
[2025-10-13 06:50:10] 2025-10-13 08:17:10,087 | INFO     | zombie collector waiting for pid 2637193
[2025-10-13 06:50:10] 2025-10-13 08:17:10,087 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 06:50:10] 2025-10-13 08:17:10,087 | INFO     | collected zombie processes
[2025-10-13 06:50:10] 2025-10-13 08:17:10,087 | INFO     | will attempt to kill all subprocesses of pid=2637193
[2025-10-13 06:50:10] 2025-10-13 08:17:13,275 | INFO     | process IDs to be killed: [2637193] (in reverse order)
[2025-10-13 06:50:10] 2025-10-13 08:17:15,907 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 06:50:10] 2025-10-13 08:17:15,907 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 06:50:10] 2025-10-13 08:17:16,935 | INFO     | did not find any defunct processes belonging to 2637193
[2025-10-13 06:50:10] 2025-10-13 08:17:17,764 | INFO     | did not find any defunct processes belonging to 2637193
[2025-10-13 06:50:10] 2025-10-13 08:17:17,765 | INFO     | ready for new job
[2025-10-13 06:50:10] 2025-10-13 08:17:17,765 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 06:50:10] 2025-10-13 08:17:17,814 | INFO     | ***************************************
[2025-10-13 06:50:10] 2025-10-13 08:17:17,815 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 06:50:10] 2025-10-13 08:17:17,815 | INFO     | ***************************************
[2025-10-13 06:50:10] 2025-10-13 08:17:17,815 | INFO     | 
[2025-10-13 06:50:10] 2025-10-13 08:17:17,865 | INFO     | architecture information:
[2025-10-13 06:50:10] 2025-10-13 08:17:17,893 | INFO     | executing command: cat /etc/os-release
[2025-10-13 06:50:10] 2025-10-13 08:17:18,030 | INFO     | cat /etc/os-release:
[2025-10-13 06:50:10] NAME="CentOS Linux"
[2025-10-13 06:50:10] VERSION="7 (Core)"
[2025-10-13 06:50:10] ID="centos"
[2025-10-13 06:50:10] ID_LIKE="rhel fedora"
[2025-10-13 06:50:10] VERSION_ID="7"
[2025-10-13 06:50:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 06:50:10] ANSI_COLOR="0;31"
[2025-10-13 06:50:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 06:50:10] HOME_URL="https://www.centos.org/"
[2025-10-13 06:50:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 06:50:10] 
[2025-10-13 06:50:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 06:50:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 06:50:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 06:50:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 06:50:10] 
[2025-10-13 06:50:10] 2025-10-13 08:17:18,031 | INFO     | ***************************************
[2025-10-13 06:50:10] 2025-10-13 08:17:18,534 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 06:50:10] 2025-10-13 08:17:18,736 | INFO     | sufficient remaining disk space (74656514048 B)
[2025-10-13 06:50:10] 2025-10-13 08:17:18,739 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 06:50:10] 2025-10-13 08:17:18,739 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 06:50:10] 2025-10-13 08:17:18,739 | INFO     | update_server=False
[2025-10-13 06:50:10] 2025-10-13 08:17:18,739 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 06:50:10] 2025-10-13 08:17:19,155 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 06:50:10] 2025-10-13 08:17:19,183 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:50:10] 2025-10-13 08:17:19,183 | INFO     | aborting loop
[2025-10-13 06:50:10] 2025-10-13 08:17:19,191 | INFO     | all job control threads have been joined
[2025-10-13 06:50:10] 2025-10-13 08:17:19,745 | INFO     | [job] retrieve thread has finished
[2025-10-13 06:50:10] 2025-10-13 08:17:19,815 | INFO     | all payload control threads have been joined
[2025-10-13 06:50:10] 2025-10-13 08:17:19,864 | INFO     | all data control threads have been joined
[2025-10-13 06:50:10] 2025-10-13 08:17:20,161 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 06:50:10] 2025-10-13 08:17:20,161 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 06:50:10] 2025-10-13 08:17:20,167 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 06:50:10] 2025-10-13 08:17:20,174 | INFO     | [data] copytool_in thread has finished
[2025-10-13 06:50:10] 2025-10-13 08:17:20,197 | INFO     | [job] control thread has finished
[2025-10-13 06:50:10] 2025-10-13 08:17:20,200 | INFO     | [job] job monitor thread has finished
[2025-10-13 06:50:10] 2025-10-13 08:17:20,249 | INFO     | [job] validate thread has finished
[2025-10-13 06:50:10] 2025-10-13 08:17:20,391 | INFO     | [payload] failed_post thread has finished
[2025-10-13 06:50:10] 2025-10-13 08:17:20,398 | INFO     | [payload] validate_post thread has finished
[2025-10-13 06:50:10] 2025-10-13 08:17:20,585 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 06:50:10] 2025-10-13 08:17:20,865 | INFO     | [payload] control thread has finished
[2025-10-13 06:50:10] 2025-10-13 08:17:20,871 | INFO     | [data] control thread has finished
[2025-10-13 06:50:10] 2025-10-13 08:17:21,163 | INFO     | [data] copytool_out thread has finished
[2025-10-13 06:50:10] 2025-10-13 08:17:21,676 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:50:10] 2025-10-13 08:17:22,174 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 06:50:10] 2025-10-13 08:17:22,688 | INFO     | [job] queue monitor thread has finished
[2025-10-13 06:50:10] 2025-10-13 08:17:26,191 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 06:50:10] 2025-10-13 08:17:42,247 | INFO     | [monitor] cgroup control has ended
[2025-10-13 06:50:10] 2025-10-13 08:17:43,277 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139700863878976)>', '<ExcThread(monitor, started 139700354397952)>']
[2025-10-13 06:50:10] 2025-10-13 08:17:44,887 | INFO     | PID=2616906 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 06:50:10] 2025-10-13 08:17:44,887 | INFO     | .. there are 41 such processes running
[2025-10-13 06:50:10] 2025-10-13 08:17:44,887 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 06:50:10] 2025-10-13 08:17:44,887 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 06:50:10] 2025-10-13 08:17:44,887 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 06:50:10] 2025-10-13 08:17:44,887 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 06:50:10] 2025-10-13 08:17:44,887 | INFO     | [monitor] control thread has ended
[2025-10-13 06:50:10] 2025-10-13 08:17:48,303 | INFO     | all workflow threads have been joined
[2025-10-13 06:50:10] 2025-10-13 08:17:48,303 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 06:50:10] 2025-10-13 08:17:48,303 | INFO     | traces error code: 0
[2025-10-13 06:50:10] 2025-10-13 08:17:48,304 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 06:50:10] 2025-10-13 08:17:54,445 [wrapper] ==== pilot stdout END ====
[2025-10-13 06:50:10] 2025-10-13 08:17:54,563 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 06:50:10] 2025-10-13 08:17:54,635 [wrapper] pilotpid: 2616906
[2025-10-13 06:50:10] 2025-10-13 08:17:54,722 [wrapper] Pilot exit status: 0
[2025-10-13 06:50:10] 2025-10-13 08:17:55,007 [wrapper] pandaids: 6840390596 6840390596
[2025-10-13 06:50:10] 2025-10-13 08:17:55,289 [wrapper] cleanup supervisor_pilot 4189397 2616907
[2025-10-13 06:50:10] 2025-10-13 08:17:55,327 [wrapper] Test setup, not cleaning
[2025-10-13 06:50:10] 2025-10-13 08:17:55,372 [wrapper] apfmon messages muted
[2025-10-13 06:50:10] 2025-10-13 08:17:55,417 [wrapper] ==== wrapper stdout END ====
[2025-10-13 06:50:10] 2025-10-13 08:17:55,500 [wrapper] ==== wrapper stderr END ====
[2025-10-13 06:50:10]  *** Error codes and diagnostics ***
[2025-10-13 06:50:10]     "exeErrorCode": 0,
[2025-10-13 06:50:10]     "exeErrorDiag": "",
[2025-10-13 06:50:10]     "pilotErrorCode": 0,
[2025-10-13 06:50:10]     "pilotErrorDiag": "",
[2025-10-13 06:50:10]  *** Listing of results directory ***
[2025-10-13 06:50:10] total 636752
[2025-10-13 06:50:10] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-13 06:50:10] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 12:01 pilot3.tar.gz
[2025-10-13 06:50:10] -rwx------. 1 boincer umatlas     36292 Oct 12 12:23 runpilot2-wrapper.sh
[2025-10-13 06:50:10] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 12:23 queuedata.json
[2025-10-13 06:50:10] -rw-r--r--. 1 boincer umatlas       100 Oct 12 15:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 06:50:10] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 15:52 run_atlas
[2025-10-13 06:50:10] -rw-r--r--. 1 boincer umatlas       105 Oct 12 15:52 job.xml
[2025-10-13 06:50:10] -rw-r--r--. 3 boincer umatlas 223408436 Oct 12 15:52 EVNT.46676267._004739.pool.root.1
[2025-10-13 06:50:10] -rw-r--r--. 3 boincer umatlas 223408436 Oct 12 15:52 ATLAS.root_0
[2025-10-13 06:50:10] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 15:52 start_atlas.sh
[2025-10-13 06:50:10] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 15:52 shared
[2025-10-13 06:50:10] -rw-r--r--. 2 boincer umatlas    569679 Oct 12 15:52 input.tar.gz
[2025-10-13 06:50:10] -rw-r--r--. 1 boincer umatlas         0 Oct 12 15:52 boinc_lockfile
[2025-10-13 06:50:10] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 20:30 pandaJob.out
[2025-10-13 06:50:10] -rw-------. 1 boincer umatlas    975603 Oct 12 20:30 agis_schedconf.cvmfs.json
[2025-10-13 06:50:10] -rw-------. 1 boincer umatlas 193837464 Oct 13 04:09 HITS.46676269._083428.pool.root.1
[2025-10-13 06:50:10] -rw-r--r--. 1 boincer umatlas       531 Oct 13 04:10 boinc_task_state.xml
[2025-10-13 06:50:10] -rw-------. 1 boincer umatlas      1055 Oct 13 04:15 memory_monitor_summary.json
[2025-10-13 06:50:10] -rw-------. 1 boincer umatlas   1560580 Oct 13 04:15 agis_ddmendpoints.agis.ALL.json
[2025-10-13 06:50:10] -rw-------. 1 boincer umatlas    617489 Oct 13 04:15 log.46676269._083428.job.log.tgz.1
[2025-10-13 06:50:10] -rw-------. 1 boincer umatlas        96 Oct 13 04:17 pilot_heartbeat.json
[2025-10-13 06:50:10] -rw-------. 1 boincer umatlas      7850 Oct 13 04:17 heartbeat.json
[2025-10-13 06:50:10] -rw-------. 1 boincer umatlas      4824 Oct 13 04:17 pilotlog.txt
[2025-10-13 06:50:10] -rw-------. 1 boincer umatlas   3121764 Oct 13 04:17 log.46676269._083428.job.log.1
[2025-10-13 06:50:10] -rw-------. 1 boincer umatlas       357 Oct 13 04:17 output.list
[2025-10-13 06:50:10] -rw-r--r--. 1 boincer umatlas       620 Oct 13 04:17 runtime_log
[2025-10-13 06:50:10] -rw-------. 1 boincer umatlas   3758080 Oct 13 04:17 result.tar.gz
[2025-10-13 06:50:10] -rw-r--r--. 1 boincer umatlas      8774 Oct 13 04:17 runtime_log.err
[2025-10-13 06:50:10] -rw-------. 1 boincer umatlas       783 Oct 13 04:17 auDODmG2DS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQckNDmUxS8Wo.diag
[2025-10-13 06:50:10] -rw-r--r--. 1 boincer umatlas      6657 Oct 13 06:48 init_data.xml
[2025-10-13 06:50:10] -rw-r--r--. 1 boincer umatlas        28 Oct 13 06:50 wrapper_checkpoint.txt
[2025-10-13 06:50:10] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 06:50 boinc_mmap_file
[2025-10-13 06:50:10] -rw-r--r--. 1 boincer umatlas     14168 Oct 13 06:50 stderr.txt
[2025-10-13 06:50:10] HITS file was successfully produced:
[2025-10-13 06:50:10] -rw-------. 1 boincer umatlas 193837464 Oct 13 04:09 shared/HITS.pool.root.1
[2025-10-13 06:50:10]  *** Contents of shared directory: ***
[2025-10-13 06:50:10] total 411724
[2025-10-13 06:50:10] -rw-r--r--. 3 boincer umatlas 223408436 Oct 12 15:52 ATLAS.root_0
[2025-10-13 06:50:10] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 15:52 start_atlas.sh
[2025-10-13 06:50:10] -rw-r--r--. 2 boincer umatlas    569679 Oct 12 15:52 input.tar.gz
[2025-10-13 06:50:10] -rw-------. 1 boincer umatlas 193837464 Oct 13 04:09 HITS.pool.root.1
[2025-10-13 06:50:10] -rw-------. 1 boincer umatlas   3758080 Oct 13 04:17 result.tar.gz
06:50:12 (2606307): run_atlas exited; CPU time 50839.635082
06:50:12 (2606307): called boinc_finish(0)

</stderr_txt>
]]>

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