Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:10:11 (392876): wrapper (7.7.26015): starting
16:10:11 (392876): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 16:10:11] Arguments: --nthreads 9
[2025-10-12 16:10:11] Threads: 9
[2025-10-12 16:10:11] Checking for CVMFS
[2025-10-12 16:10:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:10:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:10:12] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:10:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:10:12] 2.13.2.0 1630706 124273 165092 151635 0 609 37617837 40960000 22522 16776704 1 352410382 99.726 252602507 34074 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 16:10:12] CVMFS is ok
[2025-10-12 16:10:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 16:10:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 16:10:12] Further information can be found at the LHC@home message board.
[2025-10-12 16:10:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:10:12] Checking for apptainer binary...
[2025-10-12 16:10:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 16:10:12] Running /usr/bin/apptainer --version
[2025-10-12 16:10:13] apptainer version 1.4.3-1.el9
[2025-10-12 16:10:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:10:13] c-212-16.aglt2.org
[2025-10-12 16:10:13] apptainer works
[2025-10-12 16:10:13] Set ATHENA_PROC_NUMBER=9
[2025-10-12 16:10:13] Set ATHENA_CORE_NUMBER=9
[2025-10-12 16:10:13] Starting ATLAS job with PandaID=6839870894
[2025-10-12 16:10:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:37:47]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:37:47] 2025-10-12 21:36:48,825 | INFO     | adding to output.list: log.46676269._077131.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f8/ae/log.46676269._077131.job.log.tg
[2025-10-12 17:37:47] 2025-10-12 21:36:48,826 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 17:37:47] 2025-10-12 21:36:48,826 | INFO     | summary of transferred files:
[2025-10-12 17:37:47] 2025-10-12 21:36:48,826 | INFO     |  -- lfn=log.46676269._077131.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 17:37:47] 2025-10-12 21:36:48,827 | INFO     | stage-out finished correctly
[2025-10-12 17:37:47] 2025-10-12 21:36:49,310 | INFO     | monitor loop #366: job 0:6839870894 is in state 'finished'
[2025-10-12 17:37:47] 2025-10-12 21:36:49,310 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:37:47] 2025-10-12 21:36:49,355 | INFO     | time since job start (5177s) is within the limit (172800.0s)
[2025-10-12 17:37:47] 2025-10-12 21:36:50,464 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 17:37:47] 2025-10-12 21:36:51,222 | INFO     | job 6839870894 has state=finished
[2025-10-12 17:37:47] 2025-10-12 21:36:51,223 | INFO     | preparing for final server update for job 6839870894 in state='finished'
[2025-10-12 17:37:47] 2025-10-12 21:36:51,223 | INFO     | this job has now completed (state=finished)
[2025-10-12 17:37:47] 2025-10-12 21:36:51,223 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 17:37:47] 2025-10-12 21:36:51,223 | INFO     | log transfer has been attempted: DONE
[2025-10-12 17:37:47] 2025-10-12 21:36:51,223 | INFO     | job 6839870894 has finished - writing final server update
[2025-10-12 17:37:47] 2025-10-12 21:36:51,224 | INFO     | total number of processed events: 400 (read)
[2025-10-12 17:37:47] 2025-10-12 21:36:51,224 | INFO     | executing command: lscpu
[2025-10-12 17:37:47] 2025-10-12 21:36:51,294 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 17:37:47] 2025-10-12 21:36:51,362 | INFO     | time since job start (5179s) is within the limit (172800.0s)
[2025-10-12 17:37:47] 2025-10-12 21:36:51,814 | INFO     | monitor loop #367: job 0:6839870894 is in state 'finished'
[2025-10-12 17:37:47] 2025-10-12 21:36:51,814 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:37:47] 2025-10-12 21:36:53,369 | INFO     | time since job start (5181s) is within the limit (172800.0s)
[2025-10-12 17:37:47] 2025-10-12 21:36:54,321 | INFO     | monitor loop #368: job 0:6839870894 is in state 'finished'
[2025-10-12 17:37:47] 2025-10-12 21:36:54,321 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:37:47] 2025-10-12 21:36:55,376 | INFO     | time since job start (5183s) is within the limit (172800.0s)
[2025-10-12 17:37:47] 2025-10-12 21:36:56,836 | INFO     | monitor loop #369: job 0:6839870894 is in state 'finished'
[2025-10-12 17:37:47] 2025-10-12 21:36:56,836 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:37:47] 2025-10-12 21:36:57,385 | INFO     | time since job start (5185s) is within the limit (172800.0s)
[2025-10-12 17:37:47] 2025-10-12 21:36:59,344 | INFO     | monitor loop #370: job 0:6839870894 is in state 'finished'
[2025-10-12 17:37:47] 2025-10-12 21:36:59,344 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:37:47] 2025-10-12 21:36:59,392 | INFO     | time since job start (5187s) is within the limit (172800.0s)
[2025-10-12 17:37:47] 2025-10-12 21:37:01,852 | INFO     | monitor loop #371: job 0:6839870894 is in state 'finished'
[2025-10-12 17:37:47] 2025-10-12 21:37:01,852 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:37:47] 2025-10-12 21:37:01,912 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 17:37:47] 2025-10-12 21:37:01,938 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3161.235958333333
[2025-10-12 17:37:47] 2025-10-12 21:37:01,971 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6839870894/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:37:47] 2025-10-12 21:37:01,972 | INFO     | extracted standard info from prmon json
[2025-10-12 17:37:47] 2025-10-12 21:37:01,972 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 17:37:47] 2025-10-12 21:37:01,972 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 17:37:47] 2025-10-12 21:37:01,972 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 17:37:47] 2025-10-12 21:37:01,972 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 17:37:47] 2025-10-12 21:37:01,974 | INFO     | fitting pss+swap vs Time
[2025-10-12 17:37:47] 2025-10-12 21:37:01,974 | INFO     | sum of square deviations: 147122637.48717925
[2025-10-12 17:37:47] 2025-10-12 21:37:01,974 | INFO     | sum of deviations: -425317998.3846155
[2025-10-12 17:37:47] 2025-10-12 21:37:01,974 | INFO     | mean x: 1760302525.5128205
[2025-10-12 17:37:47] 2025-10-12 21:37:01,975 | INFO     | mean y: 2561062.3846153845
[2025-10-12 17:37:47] 2025-10-12 21:37:01,975 | INFO     | -- intersect: 5091433580.509091
[2025-10-12 17:37:47] 2025-10-12 21:37:01,975 | INFO     | intersect: 5091433580.509091
[2025-10-12 17:37:47] 2025-10-12 21:37:01,975 | INFO     | chi2: 0.0061763437883334245
[2025-10-12 17:37:47] 2025-10-12 21:37:01,975 | INFO     | -- intersect: 5091433580.509091
[2025-10-12 17:37:47] 2025-10-12 21:37:01,975 | INFO     | current memory leak: -2.89 B/s (using 78 data points, chi2=0.01)
[2025-10-12 17:37:47] 2025-10-12 21:37:01,975 | INFO     | could have reported an average CPU frequency of 3162 MHz (6 samples)
[2025-10-12 17:37:47] 2025-10-12 21:37:01,975 | INFO     | ..............................
[2025-10-12 17:37:47] 2025-10-12 21:37:01,975 | INFO     | . Timing measurements:
[2025-10-12 17:37:47] 2025-10-12 21:37:01,976 | INFO     | . get job = 0 s
[2025-10-12 17:37:47] 2025-10-12 21:37:01,976 | INFO     | . initial setup = 3 s
[2025-10-12 17:37:47] 2025-10-12 21:37:01,976 | INFO     | . payload setup = 11 s
[2025-10-12 17:37:47] 2025-10-12 21:37:01,976 | INFO     | . stage-in = 0 s
[2025-10-12 17:37:47] 2025-10-12 21:37:01,976 | INFO     | . payload execution = 5138 s
[2025-10-12 17:37:47] 2025-10-12 21:37:01,976 | INFO     | . stage-out = 2 s
[2025-10-12 17:37:47] 2025-10-12 21:37:01,976 | INFO     | . log creation = 0 s
[2025-10-12 17:37:47] 2025-10-12 21:37:01,976 | INFO     | ..............................
[2025-10-12 17:37:47] 2025-10-12 21:37:02,463 | INFO     | 
[2025-10-12 17:37:47] 2025-10-12 21:37:02,463 | INFO     | job summary report
[2025-10-12 17:37:47] 2025-10-12 21:37:02,464 | INFO     | --------------------------------------------------
[2025-10-12 17:37:47] 2025-10-12 21:37:02,464 | INFO     | PanDA job id: 6839870894
[2025-10-12 17:37:47] 2025-10-12 21:37:02,464 | INFO     | task id: 46676269
[2025-10-12 17:37:47] 2025-10-12 21:37:02,464 | INFO     | errors: (none)
[2025-10-12 17:37:47] 2025-10-12 21:37:02,464 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 17:37:47] 2025-10-12 21:37:02,464 | INFO     | pilot state: finished 
[2025-10-12 17:37:47] 2025-10-12 21:37:02,464 | INFO     | transexitcode: 0
[2025-10-12 17:37:47] 2025-10-12 21:37:02,464 | INFO     | exeerrorcode: 0
[2025-10-12 17:37:47] 2025-10-12 21:37:02,464 | INFO     | exeerrordiag: 
[2025-10-12 17:37:47] 2025-10-12 21:37:02,464 | INFO     | exitcode: 0
[2025-10-12 17:37:47] 2025-10-12 21:37:02,464 | INFO     | exitmsg: OK
[2025-10-12 17:37:47] 2025-10-12 21:37:02,464 | INFO     | cpuconsumptiontime: 33466 s
[2025-10-12 17:37:47] 2025-10-12 21:37:02,464 | INFO     | nevents: 400
[2025-10-12 17:37:47] 2025-10-12 21:37:02,464 | INFO     | neventsw: 0
[2025-10-12 17:37:47] 2025-10-12 21:37:02,464 | INFO     | pid: 404454
[2025-10-12 17:37:47] 2025-10-12 21:37:02,465 | INFO     | pgrp: 404454
[2025-10-12 17:37:47] 2025-10-12 21:37:02,465 | INFO     | corecount: 9
[2025-10-12 17:37:47] 2025-10-12 21:37:02,465 | INFO     | event service: False
[2025-10-12 17:37:47] 2025-10-12 21:37:02,465 | INFO     | sizes: {0: 2348857, 6: 2349119, 11: 2349147, 5155: 2375606, 5158: 2384604, 5159: 2384660, 5171: 2384982}
[2025-10-12 17:37:47] 2025-10-12 21:37:02,465 | INFO     | --------------------------------------------------
[2025-10-12 17:37:47] 2025-10-12 21:37:02,465 | INFO     | 
[2025-10-12 17:37:47] 2025-10-12 21:37:02,465 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-10-12 17:37:47] 2025-10-12 21:37:02,588 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 17:37:47] 2025-10-12 21:37:02,588 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 17:37:47] 2025-10-12 21:37:02,588 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 17:37:47] 2025-10-12 21:37:02,588 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 17:37:47] 2025-10-12 21:37:02,589 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 17:37:47] 2025-10-12 21:37:02,589 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 17:37:47] 2025-10-12 21:37:02,589 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 17:37:47] 2025-10-12 21:37:02,589 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 17:37:47] 2025-10-12 21:37:02,589 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 17:37:47] 2025-10-12 21:37:02,589 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 17:37:47] 2025-10-12 21:37:02,589 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 17:37:47] 2025-10-12 21:37:02,589 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 17:37:47] 2025-10-12 21:37:02,589 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 17:37:47] 2025-10-12 21:37:02,589 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 17:37:47] 2025-10-12 21:37:02,589 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 17:37:47] 2025-10-12 21:37:02,589 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 17:37:47] 2025-10-12 21:37:02,589 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 17:37:47] 2025-10-12 21:37:02,589 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 17:37:47] 2025-10-12 21:37:02,589 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 17:37:47] 2025-10-12 21:37:02,590 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 17:37:47] 2025-10-12 21:37:02,590 | INFO     | job 6839870894 has completed (purged errors)
[2025-10-12 17:37:47] 2025-10-12 21:37:02,613 | INFO     | overall cleanup function is called
[2025-10-12 17:37:47] 2025-10-12 21:37:02,713 | INFO     | PID=396925 has CPU usage=10.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 17:37:47] 2025-10-12 21:37:02,713 | INFO     | .. there are 22 such processes running
[2025-10-12 17:37:47] 2025-10-12 21:37:03,622 | INFO     | --- collectZombieJob: --- 10, [404454]
[2025-10-12 17:37:47] 2025-10-12 21:37:03,622 | INFO     | zombie collector waiting for pid 404454
[2025-10-12 17:37:47] 2025-10-12 21:37:03,622 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 17:37:47] 2025-10-12 21:37:03,622 | INFO     | collected zombie processes
[2025-10-12 17:37:47] 2025-10-12 21:37:03,622 | INFO     | will attempt to kill all subprocesses of pid=404454
[2025-10-12 17:37:47] 2025-10-12 21:37:04,796 | INFO     | process IDs to be killed: [404454] (in reverse order)
[2025-10-12 17:37:47] 2025-10-12 21:37:04,962 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 17:37:47] 2025-10-12 21:37:04,962 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 17:37:47] 2025-10-12 21:37:05,043 | INFO     | did not find any defunct processes belonging to 404454
[2025-10-12 17:37:47] 2025-10-12 21:37:05,064 | INFO     | did not find any defunct processes belonging to 404454
[2025-10-12 17:37:47] 2025-10-12 21:37:05,065 | INFO     | ready for new job
[2025-10-12 17:37:47] 2025-10-12 21:37:05,065 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 17:37:47] 2025-10-12 21:37:05,067 | INFO     | ***************************************
[2025-10-12 17:37:47] 2025-10-12 21:37:05,068 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:37:47] 2025-10-12 21:37:05,087 | INFO     | ***************************************
[2025-10-12 17:37:47] 2025-10-12 21:37:05,087 | INFO     | 
[2025-10-12 17:37:47] 2025-10-12 21:37:05,102 | INFO     | architecture information:
[2025-10-12 17:37:47] 2025-10-12 21:37:05,132 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:37:47] 2025-10-12 21:37:05,204 | INFO     | cat /etc/os-release:
[2025-10-12 17:37:47] NAME="CentOS Linux"
[2025-10-12 17:37:47] VERSION="7 (Core)"
[2025-10-12 17:37:47] ID="centos"
[2025-10-12 17:37:47] ID_LIKE="rhel fedora"
[2025-10-12 17:37:47] VERSION_ID="7"
[2025-10-12 17:37:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:37:47] ANSI_COLOR="0;31"
[2025-10-12 17:37:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:37:47] HOME_URL="https://www.centos.org/"
[2025-10-12 17:37:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:37:47] 
[2025-10-12 17:37:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:37:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:37:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:37:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:37:47] 
[2025-10-12 17:37:47] 2025-10-12 21:37:05,205 | INFO     | ***************************************
[2025-10-12 17:37:47] 2025-10-12 21:37:05,708 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-12 17:37:47] 2025-10-12 21:37:05,778 | INFO     | sufficient remaining disk space (127140888576 B)
[2025-10-12 17:37:47] 2025-10-12 21:37:05,778 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:37:47] 2025-10-12 21:37:05,779 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:37:47] 2025-10-12 21:37:05,779 | INFO     | update_server=False
[2025-10-12 17:37:47] 2025-10-12 21:37:05,779 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:37:47] 2025-10-12 21:37:05,779 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:37:47] 2025-10-12 21:37:05,779 | INFO     | aborting loop
[2025-10-12 17:37:47] 2025-10-12 21:37:05,779 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:37:47] 2025-10-12 21:37:06,279 | INFO     | all data control threads have been joined
[2025-10-12 17:37:47] 2025-10-12 21:37:06,294 | INFO     | all job control threads have been joined
[2025-10-12 17:37:47] 2025-10-12 21:37:06,463 | INFO     | all payload control threads have been joined
[2025-10-12 17:37:47] 2025-10-12 21:37:06,786 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:37:47] 2025-10-12 21:37:06,787 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:37:47] 2025-10-12 21:37:06,989 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:37:47] 2025-10-12 21:37:06,990 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:37:47] 2025-10-12 21:37:07,135 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:37:47] 2025-10-12 21:37:07,169 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:37:47] 2025-10-12 21:37:07,176 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:37:47] 2025-10-12 21:37:07,235 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:37:47] 2025-10-12 21:37:07,285 | INFO     | [data] control thread has finished
[2025-10-12 17:37:47] 2025-10-12 21:37:07,300 | INFO     | [job] control thread has finished
[2025-10-12 17:37:47] 2025-10-12 21:37:07,479 | INFO     | [payload] control thread has finished
[2025-10-12 17:37:47] 2025-10-12 21:37:07,546 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:37:47] 2025-10-12 21:37:07,554 | INFO     | [job] validate thread has finished
[2025-10-12 17:37:47] 2025-10-12 21:37:07,955 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:37:47] 2025-10-12 21:37:08,141 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:37:47] 2025-10-12 21:37:09,242 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:37:47] 2025-10-12 21:37:09,798 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:37:47] 2025-10-12 21:37:16,741 | INFO     | job.realtimelogging is not enabled
[2025-10-12 17:37:47] 2025-10-12 21:37:17,747 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:37:47] 2025-10-12 21:37:36,164 | INFO     | PID=396925 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 17:37:47] 2025-10-12 21:37:36,164 | INFO     | .. there are 22 such processes running
[2025-10-12 17:37:47] 2025-10-12 21:37:36,165 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:37:47] 2025-10-12 21:37:36,165 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:37:47] 2025-10-12 21:37:36,165 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:37:47] 2025-10-12 21:37:40,859 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:37:47] 2025-10-12 21:37:41,017 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140518880659264)>', '<ExcThread(monitor, started 140518159800064)>']
[2025-10-12 17:37:47] 2025-10-12 21:37:41,224 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:37:47] 2025-10-12 21:37:41,224 | INFO     | [monitor] control thread has ended
[2025-10-12 17:37:47] 2025-10-12 21:37:46,043 | INFO     | all workflow threads have been joined
[2025-10-12 17:37:47] 2025-10-12 21:37:46,044 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:37:47] 2025-10-12 21:37:46,044 | INFO     | traces error code: 0
[2025-10-12 17:37:47] 2025-10-12 21:37:46,045 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:37:47] 2025-10-12 21:37:47,015 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:37:47] 2025-10-12 21:37:47,046 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:37:47] 2025-10-12 21:37:47,069 [wrapper] pilotpid: 396925
[2025-10-12 17:37:47] 2025-10-12 21:37:47,098 [wrapper] Pilot exit status: 0
[2025-10-12 17:37:47] 2025-10-12 21:37:47,150 [wrapper] pandaids: 6839870894
[2025-10-12 17:37:47] 2025-10-12 21:37:47,225 [wrapper] cleanup supervisor_pilot  616838 396926
[2025-10-12 17:37:47] 2025-10-12 21:37:47,229 [wrapper] Test setup, not cleaning
[2025-10-12 17:37:47] 2025-10-12 21:37:47,231 [wrapper] apfmon messages muted
[2025-10-12 17:37:47] 2025-10-12 21:37:47,233 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:37:47] 2025-10-12 21:37:47,236 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:37:47]  *** Error codes and diagnostics ***
[2025-10-12 17:37:47]     "exeErrorCode": 0,
[2025-10-12 17:37:47]     "exeErrorDiag": "",
[2025-10-12 17:37:47]     "pilotErrorCode": 0,
[2025-10-12 17:37:47]     "pilotErrorDiag": "",
[2025-10-12 17:37:47]  *** Listing of results directory ***
[2025-10-12 17:37:47] total 408352
[2025-10-12 17:37:47] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 07:23 pilot3.tar.gz
[2025-10-12 17:37:47] -rwx------. 1 boincer umatlas     36292 Oct 12 07:27 runpilot2-wrapper.sh
[2025-10-12 17:37:47] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 07:27 queuedata.json
[2025-10-12 17:37:47] -rw-r--r--. 1 boincer umatlas       100 Oct 12 16:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:37:47] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 16:10 run_atlas
[2025-10-12 17:37:47] -rw-r--r--. 1 boincer umatlas       105 Oct 12 16:10 job.xml
[2025-10-12 17:37:47] -rw-r--r--. 2 boincer umatlas 218670767 Oct 12 16:10 EVNT.46676267._003679.pool.root.1
[2025-10-12 17:37:47] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 16:10 start_atlas.sh
[2025-10-12 17:37:47] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 16:10 shared
[2025-10-12 17:37:47] -rw-r--r--. 2 boincer umatlas    569675 Oct 12 16:10 input.tar.gz
[2025-10-12 17:37:47] -rw-r--r--. 1 boincer umatlas         0 Oct 12 16:10 boinc_lockfile
[2025-10-12 17:37:47] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 16:10 pandaJob.out
[2025-10-12 17:37:47] -rw-------. 1 boincer umatlas    975536 Oct 12 16:10 agis_schedconf.cvmfs.json
[2025-10-12 17:37:47] -rw-------. 1 boincer umatlas   1560580 Oct 12 16:10 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:37:47] drwx------. 5 boincer umatlas      4096 Oct 12 16:10 pilot3
[2025-10-12 17:37:47] -rw-r--r--. 1 boincer umatlas      6946 Oct 12 17:31 init_data.xml
[2025-10-12 17:37:47] -rw-------. 1 boincer umatlas 193424428 Oct 12 17:36 HITS.46676269._077131.pool.root.1
[2025-10-12 17:37:47] -rw-r--r--. 1 boincer umatlas       529 Oct 12 17:36 boinc_task_state.xml
[2025-10-12 17:37:47] -rw-------. 1 boincer umatlas      1047 Oct 12 17:36 memory_monitor_summary.json
[2025-10-12 17:37:47] -rw-------. 1 boincer umatlas    354998 Oct 12 17:36 log.46676269._077131.job.log.tgz.1
[2025-10-12 17:37:47] -rw-------. 1 boincer umatlas        95 Oct 12 17:36 pilot_heartbeat.json
[2025-10-12 17:37:47] -rw-------. 1 boincer umatlas      7800 Oct 12 17:37 heartbeat.json
[2025-10-12 17:37:47] -rw-------. 1 boincer umatlas      4896 Oct 12 17:37 pilotlog.txt
[2025-10-12 17:37:47] -rw-r--r--. 1 boincer umatlas        27 Oct 12 17:37 wrapper_checkpoint.txt
[2025-10-12 17:37:47] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 17:37 boinc_mmap_file
[2025-10-12 17:37:47] -rw-------. 1 boincer umatlas    736764 Oct 12 17:37 log.46676269._077131.job.log.1
[2025-10-12 17:37:47] -rw-------. 1 boincer umatlas       357 Oct 12 17:37 output.list
[2025-10-12 17:37:47] -rw-r--r--. 1 boincer umatlas       620 Oct 12 17:37 runtime_log
[2025-10-12 17:37:47] -rw-------. 1 boincer umatlas   1105920 Oct 12 17:37 result.tar.gz
[2025-10-12 17:37:47] -rw-r--r--. 1 boincer umatlas      8703 Oct 12 17:37 runtime_log.err
[2025-10-12 17:37:47] -rw-------. 1 boincer umatlas       656 Oct 12 17:37 EQOKDmqP9R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmddjNDmPRveQo.diag
[2025-10-12 17:37:47] -rw-r--r--. 1 boincer umatlas      2145 Oct 12 17:37 stderr.txt
[2025-10-12 17:37:47] HITS file was successfully produced:
[2025-10-12 17:37:47] -rw-------. 1 boincer umatlas 193424428 Oct 12 17:36 shared/HITS.pool.root.1
[2025-10-12 17:37:47]  *** Contents of shared directory: ***
[2025-10-12 17:37:47] total 404100
[2025-10-12 17:37:47] -rw-r--r--. 2 boincer umatlas 218670767 Oct 12 16:10 ATLAS.root_0
[2025-10-12 17:37:47] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 16:10 start_atlas.sh
[2025-10-12 17:37:47] -rw-r--r--. 2 boincer umatlas    569675 Oct 12 16:10 input.tar.gz
[2025-10-12 17:37:47] -rw-------. 1 boincer umatlas 193424428 Oct 12 17:36 HITS.pool.root.1
[2025-10-12 17:37:47] -rw-------. 1 boincer umatlas   1105920 Oct 12 17:37 result.tar.gz
17:37:49 (392876): run_atlas exited; CPU time 33551.856604
17:37:49 (392876): called boinc_finish(0)

</stderr_txt>
]]>

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