Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
20:23:48 (3687743): wrapper (7.7.26015): starting
20:23:48 (3687743): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 20:23:48] Arguments: --nthreads 12
[2025-10-12 20:23:48] Threads: 12
[2025-10-12 20:23:48] Checking for CVMFS
[2025-10-12 20:23:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 20:23:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 20:23:49] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 20:23:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 20:23:49] 2.11.0.0 3299214 3537 89108 151636 0 188 5435737 6144000 14205 130560 0 69373175 100.000 129850 196 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 20:23:49] CVMFS is ok
[2025-10-12 20:23:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:23:49] Checking for apptainer binary...
[2025-10-12 20:23:49] apptainer is not installed, using version from CVMFS
[2025-10-12 20:23:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:23:49] radiat0r
[2025-10-12 20:23:49] apptainer works
[2025-10-12 20:23:49] Set ATHENA_PROC_NUMBER=12
[2025-10-12 20:23:49] Set ATHENA_CORE_NUMBER=12
[2025-10-12 20:23:49] Starting ATLAS job with PandaID=6840181291
[2025-10-12 20:23:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:15:15]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:15:15]  workdir=None
[2025-10-12 21:15:15] ]
[2025-10-12 21:15:15] 2025-10-12 21:14:32,022 | INFO     | transferring file log.46676269._080250.job.log.tgz.1 from /var/lib/boinc/slots/4/PanDA_Pilot-6840181291/log.46676269._080250.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-12 21:15:15] 2025-10-12 21:14:32,023 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/4/PanDA_Pilot-6840181291/log.46676269._080250.job.log.tgz.1 /var/lib/boinc/slots/4/log.46676269._080250.job
[2025-10-12 21:15:15] 2025-10-12 21:14:32,054 | INFO     | adding to output.list: log.46676269._080250.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/21/37/log.46676269._080250.job.log.tg
[2025-10-12 21:15:15] 2025-10-12 21:14:32,055 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 21:15:15] 2025-10-12 21:14:32,055 | INFO     | summary of transferred files:
[2025-10-12 21:15:15] 2025-10-12 21:14:32,055 | INFO     |  -- lfn=log.46676269._080250.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 21:15:15] 2025-10-12 21:14:32,056 | INFO     | stage-out finished correctly
[2025-10-12 21:15:15] 2025-10-12 21:14:32,566 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 21:15:15] 2025-10-12 21:14:32,925 | INFO     | monitor loop #211: job 0:6840181291 is in state 'finished'
[2025-10-12 21:15:15] 2025-10-12 21:14:32,926 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:15:15] 2025-10-12 21:14:33,768 | INFO     | time since job start (3029s) is within the limit (172800.0s)
[2025-10-12 21:15:15] 2025-10-12 21:14:34,679 | INFO     | job 6840181291 has state=finished
[2025-10-12 21:15:15] 2025-10-12 21:14:34,680 | INFO     | preparing for final server update for job 6840181291 in state='finished'
[2025-10-12 21:15:15] 2025-10-12 21:14:34,681 | INFO     | this job has now completed (state=finished)
[2025-10-12 21:15:15] 2025-10-12 21:14:34,681 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 21:15:15] 2025-10-12 21:14:34,681 | INFO     | log transfer has been attempted: DONE
[2025-10-12 21:15:15] 2025-10-12 21:14:34,681 | INFO     | job 6840181291 has finished - writing final server update
[2025-10-12 21:15:15] 2025-10-12 21:14:34,682 | INFO     | total number of processed events: 400 (read)
[2025-10-12 21:15:15] 2025-10-12 21:14:34,684 | INFO     | executing command: lscpu
[2025-10-12 21:15:15] 2025-10-12 21:14:34,885 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 21:15:15] 2025-10-12 21:14:35,429 | INFO     | monitor loop #212: job 0:6840181291 is in state 'finished'
[2025-10-12 21:15:15] 2025-10-12 21:14:35,430 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:15:15] 2025-10-12 21:14:35,774 | INFO     | time since job start (3031s) is within the limit (172800.0s)
[2025-10-12 21:15:15] 2025-10-12 21:14:37,780 | INFO     | time since job start (3033s) is within the limit (172800.0s)
[2025-10-12 21:15:15] 2025-10-12 21:14:37,781 | INFO     | 3035s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-12 21:15:15] 2025-10-12 21:14:37,933 | INFO     | monitor loop #213: job 0:6840181291 is in state 'finished'
[2025-10-12 21:15:15] 2025-10-12 21:14:37,933 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:15:15] 2025-10-12 21:14:39,775 | INFO     | PID=3692493 has CPU usage=19.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-12 21:15:15] 2025-10-12 21:14:39,776 | INFO     | .. there are 17 such processes running
[2025-10-12 21:15:15] 2025-10-12 21:14:40,437 | INFO     | monitor loop #214: job 0:6840181291 is in state 'finished'
[2025-10-12 21:15:15] 2025-10-12 21:14:40,437 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:15:15] 2025-10-12 21:14:40,776 | INFO     | time since job start (3036s) is within the limit (172800.0s)
[2025-10-12 21:15:15] 2025-10-12 21:14:41,394 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 21:15:15] 2025-10-12 21:14:41,457 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2343.2845507812517
[2025-10-12 21:15:15] 2025-10-12 21:14:41,526 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6840181291/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 21:15:15] 2025-10-12 21:14:41,527 | INFO     | extracted standard info from prmon json
[2025-10-12 21:15:15] 2025-10-12 21:14:41,527 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 21:15:15] 2025-10-12 21:14:41,527 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 21:15:15] 2025-10-12 21:14:41,527 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 21:15:15] 2025-10-12 21:14:41,528 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 21:15:15] 2025-10-12 21:14:41,529 | INFO     | fitting pss+swap vs Time
[2025-10-12 21:15:15] 2025-10-12 21:14:41,529 | INFO     | sum of square deviations: 22960430.5
[2025-10-12 21:15:15] 2025-10-12 21:14:41,530 | INFO     | sum of deviations: 101576163.0
[2025-10-12 21:15:15] 2025-10-12 21:14:41,530 | INFO     | mean x: 1760302233.5
[2025-10-12 21:15:15] 2025-10-12 21:14:41,530 | INFO     | mean y: 2687183.476190476
[2025-10-12 21:15:15] 2025-10-12 21:14:41,530 | INFO     | -- intersect: -7784829979.987275
[2025-10-12 21:15:15] 2025-10-12 21:14:41,530 | INFO     | intersect: -7784829979.987275
[2025-10-12 21:15:15] 2025-10-12 21:14:41,530 | INFO     | chi2: 0.0002835702453741945
[2025-10-12 21:15:15] 2025-10-12 21:14:41,530 | INFO     | -- intersect: -7784829979.987275
[2025-10-12 21:15:15] 2025-10-12 21:14:41,530 | INFO     | current memory leak: 4.42 B/s (using 42 data points, chi2=0.00)
[2025-10-12 21:15:15] 2025-10-12 21:14:41,531 | INFO     | could have reported an average CPU frequency of 2329 MHz (5 samples)
[2025-10-12 21:15:15] 2025-10-12 21:14:41,531 | INFO     | ..............................
[2025-10-12 21:15:15] 2025-10-12 21:14:41,531 | INFO     | . Timing measurements:
[2025-10-12 21:15:15] 2025-10-12 21:14:41,531 | INFO     | . get job = 0 s
[2025-10-12 21:15:15] 2025-10-12 21:14:41,531 | INFO     | . initial setup = 1 s
[2025-10-12 21:15:15] 2025-10-12 21:14:41,531 | INFO     | . payload setup = 8 s
[2025-10-12 21:15:15] 2025-10-12 21:14:41,531 | INFO     | . stage-in = 0 s
[2025-10-12 21:15:15] 2025-10-12 21:14:41,531 | INFO     | . payload execution = 2995 s
[2025-10-12 21:15:15] 2025-10-12 21:14:41,532 | INFO     | . stage-out = 0 s
[2025-10-12 21:15:15] 2025-10-12 21:14:41,532 | INFO     | . log creation = 0 s
[2025-10-12 21:15:15] 2025-10-12 21:14:41,532 | INFO     | ..............................
[2025-10-12 21:15:15] 2025-10-12 21:14:41,632 | INFO     | 
[2025-10-12 21:15:15] 2025-10-12 21:14:41,632 | INFO     | job summary report
[2025-10-12 21:15:15] 2025-10-12 21:14:41,633 | INFO     | --------------------------------------------------
[2025-10-12 21:15:15] 2025-10-12 21:14:41,633 | INFO     | PanDA job id: 6840181291
[2025-10-12 21:15:15] 2025-10-12 21:14:41,633 | INFO     | task id: 46676269
[2025-10-12 21:15:15] 2025-10-12 21:14:41,633 | INFO     | errors: (none)
[2025-10-12 21:15:15] 2025-10-12 21:14:41,633 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 21:15:15] 2025-10-12 21:14:41,633 | INFO     | pilot state: finished 
[2025-10-12 21:15:15] 2025-10-12 21:14:41,633 | INFO     | transexitcode: 0
[2025-10-12 21:15:15] 2025-10-12 21:14:41,633 | INFO     | exeerrorcode: 0
[2025-10-12 21:15:15] 2025-10-12 21:14:41,633 | INFO     | exeerrordiag: 
[2025-10-12 21:15:15] 2025-10-12 21:14:41,633 | INFO     | exitcode: 0
[2025-10-12 21:15:15] 2025-10-12 21:14:41,634 | INFO     | exitmsg: OK
[2025-10-12 21:15:15] 2025-10-12 21:14:41,634 | INFO     | cpuconsumptiontime: 31943 s
[2025-10-12 21:15:15] 2025-10-12 21:14:41,634 | INFO     | nevents: 400
[2025-10-12 21:15:15] 2025-10-12 21:14:41,634 | INFO     | neventsw: 0
[2025-10-12 21:15:15] 2025-10-12 21:14:41,634 | INFO     | pid: 3703305
[2025-10-12 21:15:15] 2025-10-12 21:14:41,634 | INFO     | pgrp: 3703305
[2025-10-12 21:15:15] 2025-10-12 21:14:41,634 | INFO     | corecount: 12
[2025-10-12 21:15:15] 2025-10-12 21:14:41,634 | INFO     | event service: False
[2025-10-12 21:15:15] 2025-10-12 21:14:41,634 | INFO     | sizes: {0: 2348635, 1: 2348834, 8: 2349096, 11: 2349124, 3008: 2374686, 3009: 2383684, 3010: 2383868, 3019: 2384094}
[2025-10-12 21:15:15] 2025-10-12 21:14:41,634 | INFO     | --------------------------------------------------
[2025-10-12 21:15:15] 2025-10-12 21:14:41,634 | INFO     | 
[2025-10-12 21:15:15] 2025-10-12 21:14:41,635 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-10-12 21:15:15] 2025-10-12 21:14:41,666 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 21:15:15] 2025-10-12 21:14:41,666 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 21:15:15] 2025-10-12 21:14:41,666 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 21:15:15] 2025-10-12 21:14:41,667 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 21:15:15] 2025-10-12 21:14:41,667 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 21:15:15] 2025-10-12 21:14:41,667 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 21:15:15] 2025-10-12 21:14:41,667 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 21:15:15] 2025-10-12 21:14:41,667 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 21:15:15] 2025-10-12 21:14:41,667 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 21:15:15] 2025-10-12 21:14:41,667 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 21:15:15] 2025-10-12 21:14:41,667 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 21:15:15] 2025-10-12 21:14:41,667 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 21:15:15] 2025-10-12 21:14:41,667 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 21:15:15] 2025-10-12 21:14:41,667 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 21:15:15] 2025-10-12 21:14:41,668 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 21:15:15] 2025-10-12 21:14:41,668 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 21:15:15] 2025-10-12 21:14:41,668 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 21:15:15] 2025-10-12 21:14:41,668 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 21:15:15] 2025-10-12 21:14:41,668 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 21:15:15] 2025-10-12 21:14:41,668 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 21:15:15] 2025-10-12 21:14:41,668 | INFO     | job 6840181291 has completed (purged errors)
[2025-10-12 21:15:15] 2025-10-12 21:14:41,668 | INFO     | overall cleanup function is called
[2025-10-12 21:15:15] 2025-10-12 21:14:42,678 | INFO     | --- collectZombieJob: --- 10, [3703305]
[2025-10-12 21:15:15] 2025-10-12 21:14:42,679 | INFO     | zombie collector waiting for pid 3703305
[2025-10-12 21:15:15] 2025-10-12 21:14:42,679 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 21:15:15] 2025-10-12 21:14:42,679 | INFO     | collected zombie processes
[2025-10-12 21:15:15] 2025-10-12 21:14:42,679 | INFO     | will attempt to kill all subprocesses of pid=3703305
[2025-10-12 21:15:15] 2025-10-12 21:14:43,543 | INFO     | process IDs to be killed: [3703305] (in reverse order)
[2025-10-12 21:15:15] 2025-10-12 21:14:43,814 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 21:15:15] 2025-10-12 21:14:43,815 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:15:15] 2025-10-12 21:14:43,846 | INFO     | did not find any defunct processes belonging to 3703305
[2025-10-12 21:15:15] 2025-10-12 21:14:43,875 | INFO     | did not find any defunct processes belonging to 3703305
[2025-10-12 21:15:15] 2025-10-12 21:14:43,876 | INFO     | ready for new job
[2025-10-12 21:15:15] 2025-10-12 21:14:43,876 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:15:15] 2025-10-12 21:14:43,879 | INFO     | ***************************************
[2025-10-12 21:15:15] 2025-10-12 21:14:43,879 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:15:15] 2025-10-12 21:14:43,879 | INFO     | ***************************************
[2025-10-12 21:15:15] 2025-10-12 21:14:43,879 | INFO     | 
[2025-10-12 21:15:15] 2025-10-12 21:14:43,918 | INFO     | architecture information:
[2025-10-12 21:15:15] 2025-10-12 21:14:43,919 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:15:15] 2025-10-12 21:14:43,945 | INFO     | cat /etc/os-release:
[2025-10-12 21:15:15] NAME="CentOS Linux"
[2025-10-12 21:15:15] VERSION="7 (Core)"
[2025-10-12 21:15:15] ID="centos"
[2025-10-12 21:15:15] ID_LIKE="rhel fedora"
[2025-10-12 21:15:15] VERSION_ID="7"
[2025-10-12 21:15:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:15:15] ANSI_COLOR="0;31"
[2025-10-12 21:15:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:15:15] HOME_URL="https://www.centos.org/"
[2025-10-12 21:15:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:15:15] 
[2025-10-12 21:15:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:15:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:15:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:15:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:15:15] 
[2025-10-12 21:15:15] 2025-10-12 21:14:43,946 | INFO     | ***************************************
[2025-10-12 21:15:15] 2025-10-12 21:14:44,447 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-10-12 21:15:15] 2025-10-12 21:14:44,475 | INFO     | sufficient remaining disk space (1724091727872 B)
[2025-10-12 21:15:15] 2025-10-12 21:14:44,476 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:15:15] 2025-10-12 21:14:44,476 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:15:15] 2025-10-12 21:14:44,476 | INFO     | update_server=False
[2025-10-12 21:15:15] 2025-10-12 21:14:44,476 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:15:15] 2025-10-12 21:14:44,477 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:15:15] 2025-10-12 21:14:44,477 | INFO     | aborting loop
[2025-10-12 21:15:15] 2025-10-12 21:14:44,858 | INFO     | all job control threads have been joined
[2025-10-12 21:15:15] 2025-10-12 21:14:45,173 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:15:15] 2025-10-12 21:14:45,181 | INFO     | all payload control threads have been joined
[2025-10-12 21:15:15] 2025-10-12 21:14:45,429 | INFO     | all data control threads have been joined
[2025-10-12 21:15:15] 2025-10-12 21:14:45,478 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:15:15] 2025-10-12 21:14:45,483 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:15:15] 2025-10-12 21:14:45,594 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:15:15] 2025-10-12 21:14:45,598 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:15:15] 2025-10-12 21:14:45,823 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:15:15] 2025-10-12 21:14:45,864 | INFO     | [job] control thread has finished
[2025-10-12 21:15:15] 2025-10-12 21:14:45,891 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:15:15] 2025-10-12 21:14:46,186 | INFO     | [payload] control thread has finished
[2025-10-12 21:15:15] 2025-10-12 21:14:46,253 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:15:15] 2025-10-12 21:14:46,398 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:15:15] 2025-10-12 21:14:46,434 | INFO     | [data] control thread has finished
[2025-10-12 21:15:15] 2025-10-12 21:14:46,641 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:15:15] 2025-10-12 21:14:46,743 | INFO     | [job] validate thread has finished
[2025-10-12 21:15:15] 2025-10-12 21:14:47,178 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:15:15] 2025-10-12 21:14:47,649 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:15:15] 2025-10-12 21:14:47,678 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:15:15] 2025-10-12 21:14:51,686 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:15:15] 2025-10-12 21:14:55,018 | INFO     | job.realtimelogging is not enabled
[2025-10-12 21:15:15] 2025-10-12 21:14:56,022 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:15:15] 2025-10-12 21:15:08,870 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:15:15] 2025-10-12 21:15:09,015 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140035099256640)>', '<ExcThread(monitor, started 140034871969536)>']
[2025-10-12 21:15:15] 2025-10-12 21:15:14,040 | INFO     | all workflow threads have been joined
[2025-10-12 21:15:15] 2025-10-12 21:15:14,041 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:15:15] 2025-10-12 21:15:14,041 | INFO     | traces error code: 0
[2025-10-12 21:15:15] 2025-10-12 21:15:14,042 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:15:15] 2025-10-12 21:15:14,872 | INFO     | PID=3692493 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 21:15:15] 2025-10-12 21:15:14,872 | INFO     | .. there are 17 such processes running
[2025-10-12 21:15:15] 2025-10-12 21:15:14,873 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:15:15] 2025-10-12 21:15:14,873 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:15:15] 2025-10-12 21:15:14,873 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:15:15] 2025-10-12 21:15:14,873 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:15:15] 2025-10-12 21:15:14,874 | CRITICAL | thread 'MainThread' is not alive
[2025-10-12 21:15:15] 2025-10-12 21:15:14,874 | INFO     | [monitor] control thread has ended
[2025-10-12 21:15:15] 2025-10-12 21:15:15,059 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:15:15] 2025-10-12 21:15:15,063 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:15:15] 2025-10-12 21:15:15,066 [wrapper] pilotpid: 3692493
[2025-10-12 21:15:15] 2025-10-12 21:15:15,069 [wrapper] Pilot exit status: 0
[2025-10-12 21:15:15] 2025-10-12 21:15:15,083 [wrapper] pandaids: 6840181291
[2025-10-12 21:15:15] 2025-10-12 21:15:15,262 [wrapper] cleanup supervisor_pilot 4082481 3692494
[2025-10-12 21:15:15] 2025-10-12 21:15:15,266 [wrapper] Test setup, not cleaning
[2025-10-12 21:15:15] 2025-10-12 21:15:15,269 [wrapper] apfmon messages muted
[2025-10-12 21:15:15] 2025-10-12 21:15:15,272 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:15:15] 2025-10-12 21:15:15,274 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:15:15]  *** Error codes and diagnostics ***
[2025-10-12 21:15:15]     "exeErrorCode": 0,
[2025-10-12 21:15:15]     "exeErrorDiag": "",
[2025-10-12 21:15:15]     "pilotErrorCode": 0,
[2025-10-12 21:15:15]     "pilotErrorDiag": "",
[2025-10-12 21:15:15]  *** Listing of results directory ***
[2025-10-12 21:15:15] total 404900
[2025-10-12 21:15:15] -rw-r--r-- 1 boinc boinc    557409 Oct 12 13:55 pilot3.tar.gz
[2025-10-12 21:15:15] -rwx------ 1 boinc boinc     36292 Oct 12 14:05 runpilot2-wrapper.sh
[2025-10-12 21:15:15] -rw-r--r-- 1 boinc boinc      5112 Oct 12 14:05 queuedata.json
[2025-10-12 21:15:15] -rw-r--r-- 1 boinc boinc       100 Oct 12 20:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:15:15] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 20:23 run_atlas
[2025-10-12 21:15:15] -rw-r--r-- 1 boinc boinc       105 Oct 12 20:23 job.xml
[2025-10-12 21:15:15] -rw-r--r-- 2 boinc boinc     15120 Oct 12 20:23 start_atlas.sh
[2025-10-12 21:15:15] drwxrwx--x 2 boinc boinc      4096 Oct 12 20:23 shared
[2025-10-12 21:15:15] -rw-r--r-- 2 boinc boinc    569683 Oct 12 20:23 input.tar.gz
[2025-10-12 21:15:15] -rw-r--r-- 1 boinc boinc      9395 Oct 12 20:23 init_data.xml
[2025-10-12 21:15:15] -rw-r--r-- 2 boinc boinc 219492056 Oct 12 20:23 EVNT.46676267._004211.pool.root.1
[2025-10-12 21:15:15] -rw-r--r-- 1 boinc boinc         0 Oct 12 20:23 boinc_setup_complete
[2025-10-12 21:15:15] -rw-r--r-- 1 boinc boinc         0 Oct 12 20:23 boinc_lockfile
[2025-10-12 21:15:15] -rw-r--r-- 1 boinc boinc      2549 Oct 12 20:23 pandaJob.out
[2025-10-12 21:15:15] -rw------- 1 boinc boinc    975536 Oct 12 20:24 agis_schedconf.cvmfs.json
[2025-10-12 21:15:15] -rw------- 1 boinc boinc   1560580 Oct 12 20:24 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:15:15] drwx------ 5 boinc boinc      4096 Oct 12 20:24 pilot3
[2025-10-12 21:15:15] -rw------- 1 boinc boinc 189586097 Oct 12 21:13 HITS.46676269._080250.pool.root.1
[2025-10-12 21:15:15] -rw-r--r-- 1 boinc boinc       529 Oct 12 21:14 boinc_task_state.xml
[2025-10-12 21:15:15] -rw------- 1 boinc boinc      1027 Oct 12 21:14 memory_monitor_summary.json
[2025-10-12 21:15:15] -rw------- 1 boinc boinc    364038 Oct 12 21:14 log.46676269._080250.job.log.tgz.1
[2025-10-12 21:15:15] -rw------- 1 boinc boinc      7740 Oct 12 21:14 heartbeat.json
[2025-10-12 21:15:15] -rw-r--r-- 1 boinc boinc        27 Oct 12 21:15 wrapper_checkpoint.txt
[2025-10-12 21:15:15] -rw------- 1 boinc boinc       893 Oct 12 21:15 pilotlog.txt
[2025-10-12 21:15:15] -rw------- 1 boinc boinc        95 Oct 12 21:15 pilot_heartbeat.json
[2025-10-12 21:15:15] -rw-r--r-- 1 boinc boinc      8192 Oct 12 21:15 boinc_mmap_file
[2025-10-12 21:15:15] -rw------- 1 boinc boinc    452557 Oct 12 21:15 log.46676269._080250.job.log.1
[2025-10-12 21:15:15] -rw------- 1 boinc boinc       357 Oct 12 21:15 output.list
[2025-10-12 21:15:15] -rw-r--r-- 1 boinc boinc       620 Oct 12 21:15 runtime_log
[2025-10-12 21:15:15] -rw------- 1 boinc boinc    839680 Oct 12 21:15 result.tar.gz
[2025-10-12 21:15:15] -rw-r--r-- 1 boinc boinc      8658 Oct 12 21:15 runtime_log.err
[2025-10-12 21:15:15] -rw------- 1 boinc boinc       642 Oct 12 21:15 fk0KDmesBS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmz2TMDmPrzEsn.diag
[2025-10-12 21:15:15] -rw-r--r-- 1 boinc boinc     22035 Oct 12 21:15 stderr.txt
[2025-10-12 21:15:15] HITS file was successfully produced:
[2025-10-12 21:15:15] -rw------- 1 boinc boinc 189586097 Oct 12 21:13 shared/HITS.pool.root.1
[2025-10-12 21:15:15]  *** Contents of shared directory: ***
[2025-10-12 21:15:15] total 400896
[2025-10-12 21:15:15] -rw-r--r-- 2 boinc boinc     15120 Oct 12 20:23 start_atlas.sh
[2025-10-12 21:15:15] -rw-r--r-- 2 boinc boinc    569683 Oct 12 20:23 input.tar.gz
[2025-10-12 21:15:15] -rw-r--r-- 2 boinc boinc 219492056 Oct 12 20:23 ATLAS.root_0
[2025-10-12 21:15:15] -rw------- 1 boinc boinc 189586097 Oct 12 21:13 HITS.pool.root.1
[2025-10-12 21:15:15] -rw------- 1 boinc boinc    839680 Oct 12 21:15 result.tar.gz
21:15:16 (3687743): run_atlas exited; CPU time 32130.785638
21:15:16 (3687743): called boinc_finish(0)

</stderr_txt>
]]>

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