Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
15:41:27 (2027796): wrapper (7.7.26015): starting
15:41:27 (2027796): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 15:41:27] Arguments: --nthreads 4
[2025-10-12 15:41:27] Threads: 4
[2025-10-12 15:41:27] Checking for CVMFS
[2025-10-12 15:41:30] Probing /srv/cvmfs/atlas.cern.ch... OK
[2025-10-12 15:41:46] Probing /srv/cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 15:41:46] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 15:41:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 15:41:46] 2.13.2.0 2028464 0 31784 151635 3 1 4785393 6144001 0 130560 0 0 0.000 1291 1689 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://10.0.1.3:3128 1
[2025-10-12 15:41:46] CVMFS is ok
[2025-10-12 15:41:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 15:41:46] Checking for apptainer binary...
[2025-10-12 15:41:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 15:41:46] Running /usr/bin/apptainer --version
[2025-10-12 15:41:46] apptainer version 1.4.2
[2025-10-12 15:41:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 15:41:46] pygoscelis
[2025-10-12 15:41:46] apptainer works
[2025-10-12 15:41:46] Set ATHENA_PROC_NUMBER=4
[2025-10-12 15:41:46] Set ATHENA_CORE_NUMBER=4
[2025-10-12 15:41:46] /usr/bin/zgrep: line 68: /usr/bin/sed: Permission denied
[2025-10-12 15:41:46] expr: write error: Broken pipe
[2025-10-12 15:41:46] /usr/bin/zgrep: eval: line 69: unexpected EOF while looking for matching `''
[2025-10-12 15:41:46] /usr/bin/zgrep: line 253: /usr/bin/gzip: Permission denied
[2025-10-12 15:41:46] Starting ATLAS job with 
[2025-10-12 15:41:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:27:16]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:27:16] 2025-10-12 21:26:32,798 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 17:27:16] 2025-10-12 21:26:32,799 | INFO     | fitting pss+swap vs Time
[2025-10-12 17:27:16] 2025-10-12 21:26:32,799 | INFO     | sum of square deviations: 338804492.0
[2025-10-12 17:27:16] 2025-10-12 21:26:32,800 | INFO     | sum of deviations: -21275811372.999996
[2025-10-12 17:27:16] 2025-10-12 21:26:32,800 | INFO     | mean x: 1760301254.0
[2025-10-12 17:27:16] 2025-10-12 21:26:32,800 | INFO     | mean y: 2436096.786407767
[2025-10-12 17:27:16] 2025-10-12 21:26:32,800 | INFO     | -- intersect: 110543583938.94476
[2025-10-12 17:27:16] 2025-10-12 21:26:32,800 | INFO     | intersect: 110543583938.94476
[2025-10-12 17:27:16] 2025-10-12 21:26:32,800 | INFO     | chi2: 2.1925287536077205
[2025-10-12 17:27:16] 2025-10-12 21:26:32,800 | INFO     | sum of square deviations: 291817564.5
[2025-10-12 17:27:16] 2025-10-12 21:26:32,800 | INFO     | sum of deviations: -13657010406.500004
[2025-10-12 17:27:16] 2025-10-12 21:26:32,800 | INFO     | mean x: 1760301101.5
[2025-10-12 17:27:16] 2025-10-12 21:26:32,801 | INFO     | mean y: 2460066.051020408
[2025-10-12 17:27:16] 2025-10-12 21:26:32,801 | INFO     | -- intersect: 82384240281.88489
[2025-10-12 17:27:16] 2025-10-12 21:26:32,801 | INFO     | intersect: 82384240281.88489
[2025-10-12 17:27:16] 2025-10-12 21:26:32,801 | INFO     | chi2: 1.5206379325787902
[2025-10-12 17:27:16] 2025-10-12 21:26:32,801 | INFO     | current chi2=1.5206379325787902 (change=30.64456144182192 %)
[2025-10-12 17:27:16] 2025-10-12 21:26:32,801 | INFO     | sum of square deviations: 249388862.0
[2025-10-12 17:27:16] 2025-10-12 21:26:32,801 | INFO     | sum of deviations: -12343441500.000004
[2025-10-12 17:27:16] 2025-10-12 21:26:32,801 | INFO     | mean x: 1760300949.0
[2025-10-12 17:27:16] 2025-10-12 21:26:32,801 | INFO     | mean y: 2464797.3225806453
[2025-10-12 17:27:16] 2025-10-12 21:26:32,801 | INFO     | -- intersect: 87128135174.59866
[2025-10-12 17:27:16] 2025-10-12 21:26:32,801 | INFO     | intersect: 87128135174.59866
[2025-10-12 17:27:16] 2025-10-12 21:26:32,801 | INFO     | chi2: 1.5130252185562931
[2025-10-12 17:27:16] 2025-10-12 21:26:32,801 | INFO     | current chi2=1.5130252185562931 (change=0.5006263397353884 %)
[2025-10-12 17:27:16] 2025-10-12 21:26:32,802 | INFO     | right removable region: 92
[2025-10-12 17:27:16] 2025-10-12 21:26:32,802 | INFO     | sum of square deviations: 291817564.5
[2025-10-12 17:27:16] 2025-10-12 21:26:32,802 | INFO     | sum of deviations: -31197389301.499996
[2025-10-12 17:27:16] 2025-10-12 21:26:32,802 | INFO     | mean x: 1760301406.5
[2025-10-12 17:27:16] 2025-10-12 21:26:32,802 | INFO     | mean y: 2467019.275510204
[2025-10-12 17:27:16] 2025-10-12 21:26:32,802 | INFO     | -- intersect: 188191304660.53577
[2025-10-12 17:27:16] 2025-10-12 21:26:32,802 | INFO     | intersect: 188191304660.53577
[2025-10-12 17:27:16] 2025-10-12 21:26:32,802 | INFO     | chi2: 0.9208606102508575
[2025-10-12 17:27:16] 2025-10-12 21:26:32,802 | INFO     | current chi2=0.9208606102508575 (change=58.00006687549172 %)
[2025-10-12 17:27:16] 2025-10-12 21:26:32,802 | INFO     | sum of square deviations: 249388862.0
[2025-10-12 17:27:16] 2025-10-12 21:26:32,803 | INFO     | sum of deviations: -26901315248.0
[2025-10-12 17:27:16] 2025-10-12 21:26:32,803 | INFO     | mean x: 1760301559.0
[2025-10-12 17:27:16] 2025-10-12 21:26:32,803 | INFO     | mean y: 2451547.7311827955
[2025-10-12 17:27:16] 2025-10-12 21:26:32,803 | INFO     | -- intersect: 189884336369.85635
[2025-10-12 17:27:16] 2025-10-12 21:26:32,803 | INFO     | intersect: 189884336369.85635
[2025-10-12 17:27:16] 2025-10-12 21:26:32,803 | INFO     | chi2: 0.9216567013832158
[2025-10-12 17:27:16] 2025-10-12 21:26:32,803 | INFO     | current chi2=0.9216567013832158 (change=-0.08645077479656406 %)
[2025-10-12 17:27:16] 2025-10-12 21:26:32,803 | INFO     | left removable region: 20
[2025-10-12 17:27:16] 2025-10-12 21:26:32,803 | INFO     | sum of square deviations: 115715658.0
[2025-10-12 17:27:16] 2025-10-12 21:26:32,803 | INFO     | sum of deviations: -10856355226.499996
[2025-10-12 17:27:16] 2025-10-12 21:26:32,803 | INFO     | mean x: 1760301528.5
[2025-10-12 17:27:16] 2025-10-12 21:26:32,803 | INFO     | mean y: 2447050.8194444445
[2025-10-12 17:27:16] 2025-10-12 21:26:32,803 | INFO     | -- intersect: 165152600707.18036
[2025-10-12 17:27:16] 2025-10-12 21:26:32,803 | INFO     | intersect: 165152600707.18036
[2025-10-12 17:27:16] 2025-10-12 21:26:32,804 | INFO     | chi2: 0.17570696900317997
[2025-10-12 17:27:16] 2025-10-12 21:26:32,804 | INFO     | -- intersect: 165152600707.18036
[2025-10-12 17:27:16] 2025-10-12 21:26:32,804 | INFO     | current memory leak: -93.82 B/s (using 72 data points, chi2=0.18)
[2025-10-12 17:27:16] 2025-10-12 21:26:32,804 | INFO     | could have reported an average CPU frequency of 3530 MHz (7 samples)
[2025-10-12 17:27:16] 2025-10-12 21:26:32,804 | INFO     | ..............................
[2025-10-12 17:27:16] 2025-10-12 21:26:32,804 | INFO     | . Timing measurements:
[2025-10-12 17:27:16] 2025-10-12 21:26:32,804 | INFO     | . get job = 0 s
[2025-10-12 17:27:16] 2025-10-12 21:26:32,804 | INFO     | . initial setup = 3 s
[2025-10-12 17:27:16] 2025-10-12 21:26:32,804 | INFO     | . payload setup = 4 s
[2025-10-12 17:27:16] 2025-10-12 21:26:32,804 | INFO     | . stage-in = 0 s
[2025-10-12 17:27:16] 2025-10-12 21:26:32,804 | INFO     | . payload execution = 6241 s
[2025-10-12 17:27:16] 2025-10-12 21:26:32,804 | INFO     | . stage-out = 0 s
[2025-10-12 17:27:16] 2025-10-12 21:26:32,804 | INFO     | . log creation = 0 s
[2025-10-12 17:27:16] 2025-10-12 21:26:32,804 | INFO     | ..............................
[2025-10-12 17:27:16] 2025-10-12 21:26:32,886 | INFO     | time since job start (6271s) is within the limit (172800.0s)
[2025-10-12 17:27:16] 2025-10-12 21:26:33,109 | INFO     | 
[2025-10-12 17:27:16] 2025-10-12 21:26:33,109 | INFO     | job summary report
[2025-10-12 17:27:16] 2025-10-12 21:26:33,109 | INFO     | --------------------------------------------------
[2025-10-12 17:27:16] 2025-10-12 21:26:33,109 | INFO     | PanDA job id: 6840390602
[2025-10-12 17:27:16] 2025-10-12 21:26:33,109 | INFO     | task id: 46676269
[2025-10-12 17:27:16] 2025-10-12 21:26:33,109 | INFO     | errors: (none)
[2025-10-12 17:27:16] 2025-10-12 21:26:33,109 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 17:27:16] 2025-10-12 21:26:33,109 | INFO     | pilot state: finished 
[2025-10-12 17:27:16] 2025-10-12 21:26:33,109 | INFO     | transexitcode: 0
[2025-10-12 17:27:16] 2025-10-12 21:26:33,109 | INFO     | exeerrorcode: 0
[2025-10-12 17:27:16] 2025-10-12 21:26:33,109 | INFO     | exeerrordiag: 
[2025-10-12 17:27:16] 2025-10-12 21:26:33,109 | INFO     | exitcode: 0
[2025-10-12 17:27:16] 2025-10-12 21:26:33,109 | INFO     | exitmsg: OK
[2025-10-12 17:27:16] 2025-10-12 21:26:33,110 | INFO     | cpuconsumptiontime: 24090 s
[2025-10-12 17:27:16] 2025-10-12 21:26:33,110 | INFO     | nevents: 400
[2025-10-12 17:27:16] 2025-10-12 21:26:33,110 | INFO     | neventsw: 0
[2025-10-12 17:27:16] 2025-10-12 21:26:33,110 | INFO     | pid: 2050044
[2025-10-12 17:27:16] 2025-10-12 21:26:33,110 | INFO     | pgrp: 2050044
[2025-10-12 17:27:16] 2025-10-12 21:26:33,110 | INFO     | corecount: 4
[2025-10-12 17:27:16] 2025-10-12 21:26:33,110 | INFO     | event service: False
[2025-10-12 17:27:16] 2025-10-12 21:26:33,110 | INFO     | sizes: {0: 2348857, 1: 2348857, 4: 2349147, 11: 2349175, 6249: 2376229, 6250: 2376228, 6251: 2385410, 6252: 2385466, 6258: 2385660}
[2025-10-12 17:27:16] 2025-10-12 21:26:33,110 | INFO     | --------------------------------------------------
[2025-10-12 17:27:16] 2025-10-12 21:26:33,110 | INFO     | 
[2025-10-12 17:27:16] 2025-10-12 21:26:33,110 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-12 17:27:16] 2025-10-12 21:26:33,128 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 17:27:16] 2025-10-12 21:26:33,128 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 17:27:16] 2025-10-12 21:26:33,128 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 17:27:16] 2025-10-12 21:26:33,128 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 17:27:16] 2025-10-12 21:26:33,128 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 17:27:16] 2025-10-12 21:26:33,128 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 17:27:16] 2025-10-12 21:26:33,128 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 17:27:16] 2025-10-12 21:26:33,128 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 17:27:16] 2025-10-12 21:26:33,129 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 17:27:16] 2025-10-12 21:26:33,129 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 17:27:16] 2025-10-12 21:26:33,129 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 17:27:16] 2025-10-12 21:26:33,129 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 17:27:16] 2025-10-12 21:26:33,129 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 17:27:16] 2025-10-12 21:26:33,129 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 17:27:16] 2025-10-12 21:26:33,129 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 17:27:16] 2025-10-12 21:26:33,129 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 17:27:16] 2025-10-12 21:26:33,129 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 17:27:16] 2025-10-12 21:26:33,129 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 17:27:16] 2025-10-12 21:26:33,129 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 17:27:16] 2025-10-12 21:26:33,129 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 17:27:16] 2025-10-12 21:26:33,129 | INFO     | job 6840390602 has completed (purged errors)
[2025-10-12 17:27:16] 2025-10-12 21:26:33,129 | INFO     | overall cleanup function is called
[2025-10-12 17:27:16] 2025-10-12 21:26:34,135 | INFO     | --- collectZombieJob: --- 10, [2050044]
[2025-10-12 17:27:16] 2025-10-12 21:26:34,136 | INFO     | zombie collector waiting for pid 2050044
[2025-10-12 17:27:16] 2025-10-12 21:26:34,136 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 17:27:16] 2025-10-12 21:26:34,136 | INFO     | collected zombie processes
[2025-10-12 17:27:16] 2025-10-12 21:26:34,136 | INFO     | will attempt to kill all subprocesses of pid=2050044
[2025-10-12 17:27:16] 2025-10-12 21:26:34,242 | INFO     | process IDs to be killed: [2050044] (in reverse order)
[2025-10-12 17:27:16] 2025-10-12 21:26:34,296 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 17:27:16] 2025-10-12 21:26:34,296 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 17:27:16] 2025-10-12 21:26:34,300 | INFO     | did not find any defunct processes belonging to 2050044
[2025-10-12 17:27:16] 2025-10-12 21:26:34,303 | INFO     | did not find any defunct processes belonging to 2050044
[2025-10-12 17:27:16] 2025-10-12 21:26:34,303 | INFO     | ready for new job
[2025-10-12 17:27:16] 2025-10-12 21:26:34,303 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 17:27:16] 2025-10-12 21:26:34,304 | INFO     | ***************************************
[2025-10-12 17:27:16] 2025-10-12 21:26:34,304 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:27:16] 2025-10-12 21:26:34,304 | INFO     | ***************************************
[2025-10-12 17:27:16] 2025-10-12 21:26:34,304 | INFO     | 
[2025-10-12 17:27:16] 2025-10-12 21:26:34,305 | INFO     | architecture information:
[2025-10-12 17:27:16] 2025-10-12 21:26:34,305 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:27:16] 2025-10-12 21:26:34,316 | INFO     | cat /etc/os-release:
[2025-10-12 17:27:16] NAME="CentOS Linux"
[2025-10-12 17:27:16] VERSION="7 (Core)"
[2025-10-12 17:27:16] ID="centos"
[2025-10-12 17:27:16] ID_LIKE="rhel fedora"
[2025-10-12 17:27:16] VERSION_ID="7"
[2025-10-12 17:27:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:27:16] ANSI_COLOR="0;31"
[2025-10-12 17:27:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:27:16] HOME_URL="https://www.centos.org/"
[2025-10-12 17:27:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:27:16] 
[2025-10-12 17:27:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:27:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:27:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:27:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:27:16] 
[2025-10-12 17:27:16] 2025-10-12 21:26:34,316 | INFO     | ***************************************
[2025-10-12 17:27:16] 2025-10-12 21:26:34,819 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-12 17:27:16] 2025-10-12 21:26:34,832 | INFO     | sufficient remaining disk space (481658142720 B)
[2025-10-12 17:27:16] 2025-10-12 21:26:34,833 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:27:16] 2025-10-12 21:26:34,833 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:27:16] 2025-10-12 21:26:34,833 | INFO     | update_server=False
[2025-10-12 17:27:16] 2025-10-12 21:26:34,833 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:27:16] 2025-10-12 21:26:34,833 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:27:16] 2025-10-12 21:26:34,833 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-12 17:27:16] 2025-10-12 21:26:34,834 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:27:16] 2025-10-12 21:26:34,834 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:27:16] 2025-10-12 21:26:34,834 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:27:16] 2025-10-12 21:26:35,111 | INFO     | all payload control threads have been joined
[2025-10-12 17:27:16] 2025-10-12 21:26:35,492 | INFO     | all job control threads have been joined
[2025-10-12 17:27:16] 2025-10-12 21:26:35,518 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:27:16] 2025-10-12 21:26:35,518 | INFO     | aborting loop
[2025-10-12 17:27:16] 2025-10-12 21:26:35,836 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:27:16] 2025-10-12 21:26:35,838 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:27:16] 2025-10-12 21:26:35,869 | INFO     | all data control threads have been joined
[2025-10-12 17:27:16] 2025-10-12 21:26:35,899 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:27:16] 2025-10-12 21:26:35,977 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:27:16] 2025-10-12 21:26:36,100 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:27:16] 2025-10-12 21:26:36,115 | INFO     | [payload] control thread has finished
[2025-10-12 17:27:16] 2025-10-12 21:26:36,250 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:27:16] 2025-10-12 21:26:36,496 | INFO     | [job] control thread has finished
[2025-10-12 17:27:16] 2025-10-12 21:26:36,523 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:27:16] 2025-10-12 21:26:36,646 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:27:16] 2025-10-12 21:26:36,874 | INFO     | [data] control thread has finished
[2025-10-12 17:27:16] 2025-10-12 21:26:37,084 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:27:16] 2025-10-12 21:26:37,123 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:27:16] 2025-10-12 21:26:37,216 | INFO     | [job] validate thread has finished
[2025-10-12 17:27:16] 2025-10-12 21:26:37,309 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:27:16] 2025-10-12 21:26:38,254 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:27:16] 2025-10-12 21:26:41,128 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:27:16] 2025-10-12 21:26:45,805 | INFO     | job.realtimelogging is not enabled
[2025-10-12 17:27:16] 2025-10-12 21:26:46,810 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:27:16] 2025-10-12 21:26:57,607 [wrapper] supervise_pilot (15 min periods counter: 8)
[2025-10-12 17:27:16] 2025-10-12 21:27:11,105 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:27:16] 2025-10-12 21:27:11,285 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139973448357696)>', '<ExcThread(monitor, started 139972958996224)>']
[2025-10-12 17:27:16] 2025-10-12 21:27:12,019 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:27:16] 2025-10-12 21:27:12,019 | INFO     | [monitor] control thread has ended
[2025-10-12 17:27:16] 2025-10-12 21:27:16,309 | INFO     | all workflow threads have been joined
[2025-10-12 17:27:16] 2025-10-12 21:27:16,317 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:27:16] 2025-10-12 21:27:16,318 | INFO     | traces error code: 0
[2025-10-12 17:27:16] 2025-10-12 21:27:16,318 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:27:16] 2025-10-12 21:27:16,392 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:27:16] 2025-10-12 21:27:16,395 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:27:16] 2025-10-12 21:27:16,397 [wrapper] pilotpid: 2038639
[2025-10-12 17:27:16] 2025-10-12 21:27:16,400 [wrapper] Pilot exit status: 0
[2025-10-12 17:27:16] 2025-10-12 21:27:16,408 [wrapper] pandaids: 6840390602
[2025-10-12 17:27:16] 2025-10-12 21:27:16,440 [wrapper] cleanup supervisor_pilot 3435993 2038640
[2025-10-12 17:27:16] 2025-10-12 21:27:16,442 [wrapper] Test setup, not cleaning
[2025-10-12 17:27:16] 2025-10-12 21:27:16,445 [wrapper] apfmon messages muted
[2025-10-12 17:27:16] 2025-10-12 21:27:16,447 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:27:16] 2025-10-12 21:27:16,449 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:27:16]  *** Error codes and diagnostics ***
[2025-10-12 17:27:16]     "exeErrorCode": 0,
[2025-10-12 17:27:16]     "exeErrorDiag": "",
[2025-10-12 17:27:16]     "pilotErrorCode": 0,
[2025-10-12 17:27:16]     "pilotErrorDiag": "",
[2025-10-12 17:27:16]  *** Listing of results directory ***
[2025-10-12 17:27:16] total 414464
[2025-10-12 17:27:16] -rw-r--r-- 1 boinc boinc    557409 Oct 12 12:01 pilot3.tar.gz
[2025-10-12 17:27:16] -rwx------ 1 boinc boinc     36292 Oct 12 12:23 runpilot2-wrapper.sh
[2025-10-12 17:27:16] -rw-r--r-- 1 boinc boinc      5112 Oct 12 12:23 queuedata.json
[2025-10-12 17:27:16] -rw-r--r-- 1 boinc boinc       100 Oct 12 15:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:27:16] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 15:41 run_atlas
[2025-10-12 17:27:16] -rw-r--r-- 1 boinc boinc       105 Oct 12 15:41 job.xml
[2025-10-12 17:27:16] -rw-r--r-- 2 boinc boinc 223408436 Oct 12 15:41 EVNT.46676267._004739.pool.root.1
[2025-10-12 17:27:16] -rw-r--r-- 2 boinc boinc     15120 Oct 12 15:41 start_atlas.sh
[2025-10-12 17:27:16] drwxrwx--x 2 boinc boinc      4096 Oct 12 15:41 shared
[2025-10-12 17:27:16] -rw-r--r-- 2 boinc boinc    569675 Oct 12 15:41 input.tar.gz
[2025-10-12 17:27:16] -rw-r--r-- 1 boinc boinc      9792 Oct 12 15:41 init_data.xml
[2025-10-12 17:27:16] -rw-r--r-- 1 boinc boinc         0 Oct 12 15:41 boinc_setup_complete
[2025-10-12 17:27:16] -rw-r--r-- 1 boinc boinc         0 Oct 12 15:41 boinc_lockfile
[2025-10-12 17:27:16] -rw-r--r-- 1 boinc boinc      2550 Oct 12 15:41 pandaJob.out
[2025-10-12 17:27:16] -rw------- 1 boinc boinc    975536 Oct 12 15:41 agis_schedconf.cvmfs.json
[2025-10-12 17:27:16] -rw------- 1 boinc boinc   1560580 Oct 12 15:42 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:27:16] drwx------ 5 boinc boinc      4096 Oct 12 15:42 pilot3
[2025-10-12 17:27:16] -rw------- 1 boinc boinc        95 Oct 12 17:25 pilot_heartbeat.json
[2025-10-12 17:27:16] -rw------- 1 boinc boinc 194686737 Oct 12 17:26 HITS.46676269._083434.pool.root.1
[2025-10-12 17:27:16] -rw------- 1 boinc boinc      1022 Oct 12 17:26 memory_monitor_summary.json
[2025-10-12 17:27:16] -rw-r--r-- 1 boinc boinc       529 Oct 12 17:26 boinc_task_state.xml
[2025-10-12 17:27:16] -rw------- 1 boinc boinc    303390 Oct 12 17:26 log.46676269._083434.job.log.tgz.1
[2025-10-12 17:27:16] -rw------- 1 boinc boinc      7754 Oct 12 17:26 heartbeat.json
[2025-10-12 17:27:16] -rw-r--r-- 1 boinc boinc      8192 Oct 12 17:27 boinc_mmap_file
[2025-10-12 17:27:16] -rw-r--r-- 1 boinc boinc        27 Oct 12 17:27 wrapper_checkpoint.txt
[2025-10-12 17:27:16] -rw------- 1 boinc boinc      4625 Oct 12 17:27 pilotlog.txt
[2025-10-12 17:27:16] -rw------- 1 boinc boinc    900775 Oct 12 17:27 log.46676269._083434.job.log.1
[2025-10-12 17:27:16] -rw------- 1 boinc boinc       357 Oct 12 17:27 output.list
[2025-10-12 17:27:16] -rw-r--r-- 1 boinc boinc       620 Oct 12 17:27 runtime_log
[2025-10-12 17:27:16] -rw------- 1 boinc boinc   1218560 Oct 12 17:27 result.tar.gz
[2025-10-12 17:27:16] -rw-r--r-- 1 boinc boinc      8697 Oct 12 17:27 runtime_log.err
[2025-10-12 17:27:16] -rw------- 1 boinc boinc       656 Oct 12 17:27 PsMODmG2DS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmWckNDmpwxszn.diag
[2025-10-12 17:27:16] -rw-r--r-- 1 boinc boinc     20814 Oct 12 17:27 stderr.txt
[2025-10-12 17:27:16] HITS file was successfully produced:
[2025-10-12 17:27:16] -rw------- 1 boinc boinc 194686737 Oct 12 17:26 shared/HITS.pool.root.1
[2025-10-12 17:27:16]  *** Contents of shared directory: ***
[2025-10-12 17:27:16] total 410076
[2025-10-12 17:27:16] -rw-r--r-- 2 boinc boinc 223408436 Oct 12 15:41 ATLAS.root_0
[2025-10-12 17:27:16] -rw-r--r-- 2 boinc boinc     15120 Oct 12 15:41 start_atlas.sh
[2025-10-12 17:27:16] -rw-r--r-- 2 boinc boinc    569675 Oct 12 15:41 input.tar.gz
[2025-10-12 17:27:16] -rw------- 1 boinc boinc 194686737 Oct 12 17:26 HITS.pool.root.1
[2025-10-12 17:27:16] -rw------- 1 boinc boinc   1218560 Oct 12 17:27 result.tar.gz
17:27:17 (2027796): run_atlas exited; CPU time 24131.849426
17:27:17 (2027796): called boinc_finish(0)

</stderr_txt>
]]>

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