Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:39:01 (3601607): wrapper (7.7.26015): starting
15:39:01 (3601607): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 15:39:01] Arguments: --nthreads 8
[2025-10-12 15:39:01] Threads: 8
[2025-10-12 15:39:01] Checking for CVMFS
[2025-10-12 15:39:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 15:39:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 15:39:02] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 15:39:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 15:39:02] 2.13.2.0 7513 78012 101140 151635 3 498 40754794 40960000 33041 16776704 0 468055293 99.757 291177988 46114 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 15:39:02] CVMFS is ok
[2025-10-12 15:39:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 15:39:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 15:39:02] Further information can be found at the LHC@home message board.
[2025-10-12 15:39:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 15:39:02] Checking for apptainer binary...
[2025-10-12 15:39:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 15:39:02] Running /usr/bin/apptainer --version
[2025-10-12 15:39:02] apptainer version 1.4.3-1.el9
[2025-10-12 15:39:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 15:39:03] c-208-40.aglt2.org
[2025-10-12 15:39:03] apptainer works
[2025-10-12 15:39:03] Set ATHENA_PROC_NUMBER=8
[2025-10-12 15:39:03] Set ATHENA_CORE_NUMBER=8
[2025-10-12 15:39:03] Starting ATLAS job with PandaID=6840390964
[2025-10-12 15:39:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 16:50:58]  *** The last 200 lines of the pilot log: ***
[2025-10-12 16:50:58]  scope=mc23_13p6TeV
[2025-10-12 16:50:58]  status=None
[2025-10-12 16:50:58]  status_code=0
[2025-10-12 16:50:58]  storage_token=
[2025-10-12 16:50:58]  surl=/tmp/boinchome/slots/6/PanDA_Pilot-6840390964/log.46676269._083736.job.log.tgz.1
[2025-10-12 16:50:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/b0/log.46676269._083736.job.log.tgz.1
[2025-10-12 16:50:58]  workdir=None
[2025-10-12 16:50:58] ]
[2025-10-12 16:50:58] 2025-10-12 20:50:18,420 | INFO     | transferring file log.46676269._083736.job.log.tgz.1 from /tmp/boinchome/slots/6/PanDA_Pilot-6840390964/log.46676269._083736.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 16:50:58] 2025-10-12 20:50:18,420 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/6/PanDA_Pilot-6840390964/log.46676269._083736.job.log.tgz.1 /tmp/boinchome/slots/6/log.46676269._083736.job
[2025-10-12 16:50:58] 2025-10-12 20:50:18,451 | INFO     | adding to output.list: log.46676269._083736.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/b0/log.46676269._083736.job.log.tg
[2025-10-12 16:50:58] 2025-10-12 20:50:18,452 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 16:50:58] 2025-10-12 20:50:18,452 | INFO     | summary of transferred files:
[2025-10-12 16:50:58] 2025-10-12 20:50:18,452 | INFO     |  -- lfn=log.46676269._083736.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 16:50:58] 2025-10-12 20:50:18,452 | INFO     | stage-out finished correctly
[2025-10-12 16:50:58] 2025-10-12 20:50:18,754 | INFO     | time since job start (4237s) is within the limit (172800.0s)
[2025-10-12 16:50:58] 2025-10-12 20:50:18,835 | INFO     | monitor loop #300: job 0:6840390964 is in state 'finished'
[2025-10-12 16:50:58] 2025-10-12 20:50:18,835 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:50:58] 2025-10-12 20:50:19,766 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 16:50:58] 2025-10-12 20:50:19,823 | INFO     | job 6840390964 has state=finished
[2025-10-12 16:50:58] 2025-10-12 20:50:19,823 | INFO     | preparing for final server update for job 6840390964 in state='finished'
[2025-10-12 16:50:58] 2025-10-12 20:50:19,824 | INFO     | this job has now completed (state=finished)
[2025-10-12 16:50:58] 2025-10-12 20:50:19,824 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 16:50:58] 2025-10-12 20:50:19,824 | INFO     | log transfer has been attempted: DONE
[2025-10-12 16:50:58] 2025-10-12 20:50:19,824 | INFO     | job 6840390964 has finished - writing final server update
[2025-10-12 16:50:58] 2025-10-12 20:50:19,824 | INFO     | total number of processed events: 400 (read)
[2025-10-12 16:50:58] 2025-10-12 20:50:19,825 | INFO     | executing command: lscpu
[2025-10-12 16:50:58] 2025-10-12 20:50:19,897 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 16:50:58] 2025-10-12 20:50:20,761 | INFO     | time since job start (4239s) is within the limit (172800.0s)
[2025-10-12 16:50:58] 2025-10-12 20:50:21,339 | INFO     | monitor loop #301: job 0:6840390964 is in state 'finished'
[2025-10-12 16:50:58] 2025-10-12 20:50:21,339 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:50:58] 2025-10-12 20:50:22,770 | INFO     | time since job start (4241s) is within the limit (172800.0s)
[2025-10-12 16:50:58] 2025-10-12 20:50:23,844 | INFO     | monitor loop #302: job 0:6840390964 is in state 'finished'
[2025-10-12 16:50:58] 2025-10-12 20:50:23,844 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:50:58] 2025-10-12 20:50:24,777 | INFO     | time since job start (4243s) is within the limit (172800.0s)
[2025-10-12 16:50:58] 2025-10-12 20:50:25,716 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 16:50:58] 2025-10-12 20:50:25,721 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9938515625
[2025-10-12 16:50:58] 2025-10-12 20:50:25,732 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6840390964/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 16:50:58] 2025-10-12 20:50:25,733 | INFO     | extracted standard info from prmon json
[2025-10-12 16:50:58] 2025-10-12 20:50:25,733 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 16:50:58] 2025-10-12 20:50:25,733 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 16:50:58] 2025-10-12 20:50:25,733 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 16:50:58] 2025-10-12 20:50:25,733 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 16:50:58] 2025-10-12 20:50:25,734 | INFO     | fitting pss+swap vs Time
[2025-10-12 16:50:58] 2025-10-12 20:50:25,734 | INFO     | sum of square deviations: 73882315.5
[2025-10-12 16:50:58] 2025-10-12 20:50:25,734 | INFO     | sum of deviations: 3422112017.0000005
[2025-10-12 16:50:58] 2025-10-12 20:50:25,734 | INFO     | mean x: 1760300219.5
[2025-10-12 16:50:58] 2025-10-12 20:50:25,734 | INFO     | mean y: 2486524.5483870967
[2025-10-12 16:50:58] 2025-10-12 20:50:25,734 | INFO     | -- intersect: -81531835916.64107
[2025-10-12 16:50:58] 2025-10-12 20:50:25,734 | INFO     | intersect: -81531835916.64107
[2025-10-12 16:50:58] 2025-10-12 20:50:25,734 | INFO     | chi2: 0.21628466694455747
[2025-10-12 16:50:58] 2025-10-12 20:50:25,734 | INFO     | -- intersect: -81531835916.64107
[2025-10-12 16:50:58] 2025-10-12 20:50:25,735 | INFO     | current memory leak: 46.32 B/s (using 62 data points, chi2=0.22)
[2025-10-12 16:50:58] 2025-10-12 20:50:25,735 | INFO     | could have reported an average CPU frequency of 3795 MHz (6 samples)
[2025-10-12 16:50:58] 2025-10-12 20:50:25,735 | INFO     | ..............................
[2025-10-12 16:50:58] 2025-10-12 20:50:25,735 | INFO     | . Timing measurements:
[2025-10-12 16:50:58] 2025-10-12 20:50:25,735 | INFO     | . get job = 0 s
[2025-10-12 16:50:58] 2025-10-12 20:50:25,735 | INFO     | . initial setup = 2 s
[2025-10-12 16:50:58] 2025-10-12 20:50:25,735 | INFO     | . payload setup = 21 s
[2025-10-12 16:50:58] 2025-10-12 20:50:25,735 | INFO     | . stage-in = 0 s
[2025-10-12 16:50:58] 2025-10-12 20:50:25,735 | INFO     | . payload execution = 4173 s
[2025-10-12 16:50:58] 2025-10-12 20:50:25,735 | INFO     | . stage-out = 0 s
[2025-10-12 16:50:58] 2025-10-12 20:50:25,735 | INFO     | . log creation = 0 s
[2025-10-12 16:50:58] 2025-10-12 20:50:25,735 | INFO     | ..............................
[2025-10-12 16:50:58] 2025-10-12 20:50:25,781 | INFO     | 
[2025-10-12 16:50:58] 2025-10-12 20:50:25,781 | INFO     | job summary report
[2025-10-12 16:50:58] 2025-10-12 20:50:25,781 | INFO     | --------------------------------------------------
[2025-10-12 16:50:58] 2025-10-12 20:50:25,781 | INFO     | PanDA job id: 6840390964
[2025-10-12 16:50:58] 2025-10-12 20:50:25,782 | INFO     | task id: 46676269
[2025-10-12 16:50:58] 2025-10-12 20:50:25,782 | INFO     | errors: (none)
[2025-10-12 16:50:58] 2025-10-12 20:50:25,782 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 16:50:58] 2025-10-12 20:50:25,782 | INFO     | pilot state: finished 
[2025-10-12 16:50:58] 2025-10-12 20:50:25,782 | INFO     | transexitcode: 0
[2025-10-12 16:50:58] 2025-10-12 20:50:25,782 | INFO     | exeerrorcode: 0
[2025-10-12 16:50:58] 2025-10-12 20:50:25,782 | INFO     | exeerrordiag: 
[2025-10-12 16:50:58] 2025-10-12 20:50:25,782 | INFO     | exitcode: 0
[2025-10-12 16:50:58] 2025-10-12 20:50:25,782 | INFO     | exitmsg: OK
[2025-10-12 16:50:58] 2025-10-12 20:50:25,782 | INFO     | cpuconsumptiontime: 23466 s
[2025-10-12 16:50:58] 2025-10-12 20:50:25,782 | INFO     | nevents: 400
[2025-10-12 16:50:58] 2025-10-12 20:50:25,782 | INFO     | neventsw: 0
[2025-10-12 16:50:58] 2025-10-12 20:50:25,782 | INFO     | pid: 3637497
[2025-10-12 16:50:58] 2025-10-12 20:50:25,782 | INFO     | pgrp: 3637497
[2025-10-12 16:50:58] 2025-10-12 20:50:25,782 | INFO     | corecount: 8
[2025-10-12 16:50:58] 2025-10-12 20:50:25,782 | INFO     | event service: False
[2025-10-12 16:50:58] 2025-10-12 20:50:25,782 | INFO     | sizes: {0: 2348684, 1: 2348883, 11: 2348883, 14: 2349173, 22: 2349201, 4199: 2375435, 4201: 2384433, 4202: 2384489, 4208: 2384683}
[2025-10-12 16:50:58] 2025-10-12 20:50:25,782 | INFO     | --------------------------------------------------
[2025-10-12 16:50:58] 2025-10-12 20:50:25,782 | INFO     | 
[2025-10-12 16:50:58] 2025-10-12 20:50:25,782 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-10-12 16:50:58] 2025-10-12 20:50:25,822 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 16:50:58] 2025-10-12 20:50:25,822 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 16:50:58] 2025-10-12 20:50:25,822 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 16:50:58] 2025-10-12 20:50:25,823 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 16:50:58] 2025-10-12 20:50:25,823 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 16:50:58] 2025-10-12 20:50:25,823 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 16:50:58] 2025-10-12 20:50:25,823 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 16:50:58] 2025-10-12 20:50:25,823 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 16:50:58] 2025-10-12 20:50:25,823 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 16:50:58] 2025-10-12 20:50:25,823 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 16:50:58] 2025-10-12 20:50:25,823 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 16:50:58] 2025-10-12 20:50:25,823 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 16:50:58] 2025-10-12 20:50:25,823 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 16:50:58] 2025-10-12 20:50:25,823 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 16:50:58] 2025-10-12 20:50:25,823 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 16:50:58] 2025-10-12 20:50:25,823 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 16:50:58] 2025-10-12 20:50:25,823 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 16:50:58] 2025-10-12 20:50:25,823 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 16:50:58] 2025-10-12 20:50:25,823 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 16:50:58] 2025-10-12 20:50:25,823 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 16:50:58] 2025-10-12 20:50:25,823 | INFO     | job 6840390964 has completed (purged errors)
[2025-10-12 16:50:58] 2025-10-12 20:50:25,823 | INFO     | overall cleanup function is called
[2025-10-12 16:50:58] 2025-10-12 20:50:26,830 | INFO     | --- collectZombieJob: --- 10, [3637497]
[2025-10-12 16:50:58] 2025-10-12 20:50:26,831 | INFO     | zombie collector waiting for pid 3637497
[2025-10-12 16:50:58] 2025-10-12 20:50:26,831 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 16:50:58] 2025-10-12 20:50:26,831 | INFO     | collected zombie processes
[2025-10-12 16:50:58] 2025-10-12 20:50:26,831 | INFO     | will attempt to kill all subprocesses of pid=3637497
[2025-10-12 16:50:58] 2025-10-12 20:50:27,274 | INFO     | process IDs to be killed: [3637497] (in reverse order)
[2025-10-12 16:50:58] 2025-10-12 20:50:27,417 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 16:50:58] 2025-10-12 20:50:27,417 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 16:50:58] 2025-10-12 20:50:27,439 | INFO     | did not find any defunct processes belonging to 3637497
[2025-10-12 16:50:58] 2025-10-12 20:50:27,460 | INFO     | did not find any defunct processes belonging to 3637497
[2025-10-12 16:50:58] 2025-10-12 20:50:27,460 | INFO     | ready for new job
[2025-10-12 16:50:58] 2025-10-12 20:50:27,460 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 16:50:58] 2025-10-12 20:50:27,462 | INFO     | ***************************************
[2025-10-12 16:50:58] 2025-10-12 20:50:27,462 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-12 16:50:58] 2025-10-12 20:50:27,462 | INFO     | ***************************************
[2025-10-12 16:50:58] 2025-10-12 20:50:27,462 | INFO     | 
[2025-10-12 16:50:58] 2025-10-12 20:50:27,466 | INFO     | architecture information:
[2025-10-12 16:50:58] 2025-10-12 20:50:27,467 | INFO     | executing command: cat /etc/os-release
[2025-10-12 16:50:58] 2025-10-12 20:50:27,490 | INFO     | cat /etc/os-release:
[2025-10-12 16:50:58] NAME="CentOS Linux"
[2025-10-12 16:50:58] VERSION="7 (Core)"
[2025-10-12 16:50:58] ID="centos"
[2025-10-12 16:50:58] ID_LIKE="rhel fedora"
[2025-10-12 16:50:58] VERSION_ID="7"
[2025-10-12 16:50:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 16:50:58] ANSI_COLOR="0;31"
[2025-10-12 16:50:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 16:50:58] HOME_URL="https://www.centos.org/"
[2025-10-12 16:50:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 16:50:58] 
[2025-10-12 16:50:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 16:50:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 16:50:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 16:50:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 16:50:58] 
[2025-10-12 16:50:58] 2025-10-12 20:50:27,490 | INFO     | ***************************************
[2025-10-12 16:50:58] 2025-10-12 20:50:27,995 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-10-12 16:50:58] 2025-10-12 20:50:28,012 | INFO     | sufficient remaining disk space (169578856448 B)
[2025-10-12 16:50:58] 2025-10-12 20:50:28,012 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 16:50:58] 2025-10-12 20:50:28,013 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 16:50:58] 2025-10-12 20:50:28,013 | INFO     | update_server=False
[2025-10-12 16:50:58] 2025-10-12 20:50:28,013 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 16:50:58] 2025-10-12 20:50:28,013 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:50:58] 2025-10-12 20:50:28,013 | INFO     | aborting loop
[2025-10-12 16:50:58] 2025-10-12 20:50:28,219 | INFO     | all data control threads have been joined
[2025-10-12 16:50:58] 2025-10-12 20:50:28,709 | INFO     | all payload control threads have been joined
[2025-10-12 16:50:58] 2025-10-12 20:50:29,017 | INFO     | [job] retrieve thread has finished
[2025-10-12 16:50:58] 2025-10-12 20:50:29,019 | INFO     | [job] job monitor thread has finished
[2025-10-12 16:50:58] 2025-10-12 20:50:29,024 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 16:50:58] 2025-10-12 20:50:29,219 | INFO     | [job] validate thread has finished
[2025-10-12 16:50:58] 2025-10-12 20:50:29,221 | INFO     | all job control threads have been joined
[2025-10-12 16:50:58] 2025-10-12 20:50:29,225 | INFO     | [data] control thread has finished
[2025-10-12 16:50:58] 2025-10-12 20:50:29,439 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 16:50:58] 2025-10-12 20:50:29,684 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 16:50:58] 2025-10-12 20:50:29,705 | INFO     | [data] copytool_in thread has finished
[2025-10-12 16:50:58] 2025-10-12 20:50:29,715 | INFO     | [payload] control thread has finished
[2025-10-12 16:50:58] 2025-10-12 20:50:30,075 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 16:50:58] 2025-10-12 20:50:30,227 | INFO     | [job] control thread has finished
[2025-10-12 16:50:58] 2025-10-12 20:50:30,266 | INFO     | [payload] failed_post thread has finished
[2025-10-12 16:50:58] 2025-10-12 20:50:30,338 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 16:50:58] 2025-10-12 20:50:30,581 | INFO     | [payload] validate_post thread has finished
[2025-10-12 16:50:58] 2025-10-12 20:50:30,794 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:50:58] 2025-10-12 20:50:31,029 | INFO     | [data] copytool_out thread has finished
[2025-10-12 16:50:58] 2025-10-12 20:50:31,799 | INFO     | [job] queue monitor thread has finished
[2025-10-12 16:50:58] 2025-10-12 20:50:34,347 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 16:50:58] 2025-10-12 20:50:38,087 | INFO     | job.realtimelogging is not enabled
[2025-10-12 16:50:58] 2025-10-12 20:50:39,092 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 16:50:58] 2025-10-12 20:50:47,708 | INFO     | [monitor] cgroup control has ended
[2025-10-12 16:50:58] 2025-10-12 20:50:47,816 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139918679476032)>', '<ExcThread(monitor, started 139918307202816)>']
[2025-10-12 16:50:58] 2025-10-12 20:50:52,841 | INFO     | all workflow threads have been joined
[2025-10-12 16:50:58] 2025-10-12 20:50:52,843 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 16:50:58] 2025-10-12 20:50:52,844 | INFO     | traces error code: 0
[2025-10-12 16:50:58] 2025-10-12 20:50:52,844 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 16:50:58] 2025-10-12 20:50:58,316 | INFO     | PID=3610486 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 16:50:58] 2025-10-12 20:50:58,318 | INFO     | .. there are 31 such processes running
[2025-10-12 16:50:58] 2025-10-12 20:50:58,319 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 16:50:58] 2025-10-12 20:50:58,319 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 16:50:58] 2025-10-12 20:50:58,319 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 16:50:58] 2025-10-12 20:50:58,319 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 16:50:58] 2025-10-12 20:50:58,319 | INFO     | [monitor] control thread has ended
[2025-10-12 16:50:58] 2025-10-12 20:50:58,499 [wrapper] ==== pilot stdout END ====
[2025-10-12 16:50:58] 2025-10-12 20:50:58,502 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 16:50:58] 2025-10-12 20:50:58,513 [wrapper] pilotpid: 3610486
[2025-10-12 16:50:58] 2025-10-12 20:50:58,518 [wrapper] Pilot exit status: 0
[2025-10-12 16:50:58] 2025-10-12 20:50:58,539 [wrapper] pandaids: 6840390964
[2025-10-12 16:50:58] 2025-10-12 20:50:58,647 [wrapper] cleanup supervisor_pilot 3782116 3610487
[2025-10-12 16:50:58] 2025-10-12 20:50:58,653 [wrapper] Test setup, not cleaning
[2025-10-12 16:50:58] 2025-10-12 20:50:58,657 [wrapper] apfmon messages muted
[2025-10-12 16:50:58] 2025-10-12 20:50:58,662 [wrapper] ==== wrapper stdout END ====
[2025-10-12 16:50:58] 2025-10-12 20:50:58,665 [wrapper] ==== wrapper stderr END ====
[2025-10-12 16:50:58]  *** Error codes and diagnostics ***
[2025-10-12 16:50:58]     "exeErrorCode": 0,
[2025-10-12 16:50:58]     "exeErrorDiag": "",
[2025-10-12 16:50:58]     "pilotErrorCode": 0,
[2025-10-12 16:50:58]     "pilotErrorDiag": "",
[2025-10-12 16:50:58]  *** Listing of results directory ***
[2025-10-12 16:50:58] total 416156
[2025-10-12 16:50:58] -rw-r--r--. 1 boincer umatlas    563267 Oct  7 03:02 pilot3.tar.gz
[2025-10-12 16:50:58] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 12:39 queuedata.json
[2025-10-12 16:50:58] -rwx------. 1 boincer umatlas     36292 Oct 12 12:40 runpilot2-wrapper.sh
[2025-10-12 16:50:58] -rw-r--r--. 1 boincer umatlas       100 Oct 12 15:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 16:50:58] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 15:39 run_atlas
[2025-10-12 16:50:58] -rw-r--r--. 1 boincer umatlas       105 Oct 12 15:39 job.xml
[2025-10-12 16:50:58] -rw-r--r--. 2 boincer umatlas 222539318 Oct 12 15:39 EVNT.46676267._004752.pool.root.1
[2025-10-12 16:50:58] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 15:39 start_atlas.sh
[2025-10-12 16:50:58] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 15:39 shared
[2025-10-12 16:50:58] -rw-r--r--. 2 boincer umatlas    576703 Oct 12 15:39 input.tar.gz
[2025-10-12 16:50:58] -rw-r--r--. 1 boincer umatlas         0 Oct 12 15:39 boinc_lockfile
[2025-10-12 16:50:58] -rw-r--r--. 1 boincer umatlas      2549 Oct 12 15:39 pandaJob.out
[2025-10-12 16:50:58] -rw-------. 1 boincer umatlas    975536 Oct 12 15:39 agis_schedconf.cvmfs.json
[2025-10-12 16:50:58] -rw-------. 1 boincer umatlas   1560580 Oct 12 15:39 agis_ddmendpoints.agis.ALL.json
[2025-10-12 16:50:58] drwx------. 4 boincer umatlas      4096 Oct 12 15:39 pilot3
[2025-10-12 16:50:58] -rw-r--r--. 1 boincer umatlas      7173 Oct 12 16:48 init_data.xml
[2025-10-12 16:50:58] -rw-------. 1 boincer umatlas 197870340 Oct 12 16:49 HITS.46676269._083736.pool.root.1
[2025-10-12 16:50:58] -rw-r--r--. 1 boincer umatlas       529 Oct 12 16:49 boinc_task_state.xml
[2025-10-12 16:50:58] -rw-------. 1 boincer umatlas      1047 Oct 12 16:50 memory_monitor_summary.json
[2025-10-12 16:50:58] -rw-------. 1 boincer umatlas    307086 Oct 12 16:50 log.46676269._083736.job.log.tgz.1
[2025-10-12 16:50:58] -rw-------. 1 boincer umatlas      7801 Oct 12 16:50 heartbeat.json
[2025-10-12 16:50:58] -rw-r--r--. 1 boincer umatlas        27 Oct 12 16:50 wrapper_checkpoint.txt
[2025-10-12 16:50:58] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 16:50 boinc_mmap_file
[2025-10-12 16:50:58] -rw-------. 1 boincer umatlas        95 Oct 12 16:50 pilot_heartbeat.json
[2025-10-12 16:50:58] -rw-------. 1 boincer umatlas       823 Oct 12 16:50 pilotlog.txt
[2025-10-12 16:50:58] -rw-------. 1 boincer umatlas    609481 Oct 12 16:50 log.46676269._083736.job.log.1
[2025-10-12 16:50:58] -rw-------. 1 boincer umatlas       357 Oct 12 16:50 output.list
[2025-10-12 16:50:58] -rw-r--r--. 1 boincer umatlas       620 Oct 12 16:50 runtime_log
[2025-10-12 16:50:58] -rw-------. 1 boincer umatlas    931840 Oct 12 16:50 result.tar.gz
[2025-10-12 16:50:58] -rw-r--r--. 1 boincer umatlas      8703 Oct 12 16:50 runtime_log.err
[2025-10-12 16:50:58] -rw-------. 1 boincer umatlas       656 Oct 12 16:50 k89MDmOIES8n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQUMDmctX4Dm.diag
[2025-10-12 16:50:58] -rw-r--r--. 1 boincer umatlas     21938 Oct 12 16:50 stderr.txt
[2025-10-12 16:50:58] HITS file was successfully produced:
[2025-10-12 16:50:58] -rw-------. 1 boincer umatlas 197870340 Oct 12 16:49 shared/HITS.pool.root.1
[2025-10-12 16:50:58]  *** Contents of shared directory: ***
[2025-10-12 16:50:58] total 412056
[2025-10-12 16:50:58] -rw-r--r--. 2 boincer umatlas 222539318 Oct 12 15:39 ATLAS.root_0
[2025-10-12 16:50:58] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 15:39 start_atlas.sh
[2025-10-12 16:50:58] -rw-r--r--. 2 boincer umatlas    576703 Oct 12 15:39 input.tar.gz
[2025-10-12 16:50:58] -rw-------. 1 boincer umatlas 197870340 Oct 12 16:49 HITS.pool.root.1
[2025-10-12 16:50:58] -rw-------. 1 boincer umatlas    931840 Oct 12 16:50 result.tar.gz
16:51:00 (3601607): run_atlas exited; CPU time 23579.513150
16:51:00 (3601607): called boinc_finish(0)

</stderr_txt>
]]>

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