Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:29:35 (561524): wrapper (7.7.26015): starting
08:29:35 (561524): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 08:29:35] Arguments: --nthreads 4
[2025-10-13 08:29:35] Threads: 4
[2025-10-13 08:29:35] Checking for CVMFS
[2025-10-13 08:29:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 08:29:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 08:29:35] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 08:29:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 08:29:35] 2.9.2.0 4261 1571 87320 151650 1 188 33067389 36864000 0 130560 0 1440219 99.993 54555 599 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 08:29:35] CVMFS is ok
[2025-10-13 08:29:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 08:29:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 08:29:35] Further information can be found at the LHC@home message board.
[2025-10-13 08:29:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 08:29:35] Checking for apptainer binary...
[2025-10-13 08:29:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 08:29:35] Running /usr/bin/apptainer --version
[2025-10-13 08:29:35] apptainer version 1.4.1-1.1
[2025-10-13 08:29:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 08:29:35] atlasA237
[2025-10-13 08:29:35] apptainer works
[2025-10-13 08:29:35] Set ATHENA_PROC_NUMBER=4
[2025-10-13 08:29:35] Set ATHENA_CORE_NUMBER=4
[2025-10-13 08:29:35] Starting ATLAS job with PandaID=6840531307
[2025-10-13 08:29:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 09:44:53]  *** The last 200 lines of the pilot log: ***
[2025-10-13 09:44:53] 2025-10-13 07:44:08,456 | INFO     | [payload] control thread has finished
[2025-10-13 09:44:53] 2025-10-13 07:44:08,663 | INFO     | [payload] validate_post thread has finished
[2025-10-13 09:44:53] 2025-10-13 07:44:08,674 | INFO     | [job] job monitor thread has finished
[2025-10-13 09:44:53] 2025-10-13 07:44:08,842 | INFO     | [data] copytool_out thread has finished
[2025-10-13 09:44:53] 2025-10-13 07:44:09,056 | INFO     | [job] control thread has finished
[2025-10-13 09:44:53] 2025-10-13 07:44:09,213 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 09:44:53] 2025-10-13 07:44:09,213 | INFO     | [job] validate thread has finished
[2025-10-13 09:44:53] 2025-10-13 07:44:09,214 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 09:44:53] 2025-10-13 07:44:09,227 | INFO     | [payload] failed_post thread has finished
[2025-10-13 09:44:53] 2025-10-13 07:44:09,803 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:44:53] 2025-10-13 07:44:09,913 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 09:44:53] 2025-10-13 07:44:10,808 | INFO     | [job] queue monitor thread has finished
[2025-10-13 09:44:53] 2025-10-13 07:44:13,920 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 09:44:53] 2025-10-13 07:44:17,542 | INFO     | job.realtimelogging is not enabled
[2025-10-13 09:44:53] 2025-10-13 07:44:18,547 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 09:44:53] 2025-10-13 07:44:37,881 | INFO     | PID=565321 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 09:44:53] 2025-10-13 07:44:37,881 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 09:44:53] 2025-10-13 07:44:37,881 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 09:44:53] 2025-10-13 07:44:37,881 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 09:44:53] 2025-10-13 07:44:41,793 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-10-13 09:44:53] 2025-10-13 07:44:47,917 | INFO     | [monitor] cgroup control has ended
[2025-10-13 09:44:53] 2025-10-13 07:44:48,306 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140465603372864)>', '<ExcThread(monitor, started 140464640464640)>']
[2025-10-13 09:44:53] 2025-10-13 07:44:48,939 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 09:44:53] 2025-10-13 07:44:48,939 | INFO     | [monitor] control thread has ended
[2025-10-13 09:44:53] 2025-10-13 07:44:53,332 | INFO     | all workflow threads have been joined
[2025-10-13 09:44:53] 2025-10-13 07:44:53,332 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 09:44:53] 2025-10-13 07:44:53,333 | INFO     | traces error code: 0
[2025-10-13 09:44:53] 2025-10-13 07:44:53,334 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 09:44:53] 2025-10-13 07:44:53,402 [wrapper] ==== pilot stdout END ====
[2025-10-13 09:44:53] 2025-10-13 07:44:53,406 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 09:44:53] 2025-10-13 07:44:53,410 [wrapper] pilotpid: 565321
[2025-10-13 09:44:53] 2025-10-13 07:44:53,413 [wrapper] Pilot exit status: 0
[2025-10-13 09:44:53] 2025-10-13 07:44:53,423 [wrapper] pandaids: 6840531307
[2025-10-13 09:44:53] 2025-10-13 07:44:53,445 [wrapper] cleanup supervisor_pilot  586798 565322
[2025-10-13 09:44:53] 2025-10-13 07:44:53,449 [wrapper] Test setup, not cleaning
[2025-10-13 09:44:53] 2025-10-13 07:44:53,452 [wrapper] apfmon messages muted
[2025-10-13 09:44:53] 2025-10-13 07:44:53,456 [wrapper] ==== wrapper stdout END ====
[2025-10-13 09:44:53] 2025-10-13 07:44:53,459 [wrapper] ==== wrapper stderr END ====
[2025-10-13 09:44:53]  *** Error codes and diagnostics ***
[2025-10-13 09:44:53]     "exeErrorCode": 0,
[2025-10-13 09:44:53]     "exeErrorDiag": "",
[2025-10-13 09:44:53]     "pilotErrorCode": 0,
[2025-10-13 09:44:53]     "pilotErrorDiag": "",
[2025-10-13 09:44:53]  *** Listing of results directory ***
[2025-10-13 09:44:53] total 418132
[2025-10-13 09:44:53] -rw-r--r-- 1 boinc boinc    557409 Oct 12 19:57 pilot3.tar.gz
[2025-10-13 09:44:53] -rw-r--r-- 1 boinc boinc      5112 Oct 12 20:13 queuedata.json
[2025-10-13 09:44:53] -rwx------ 1 boinc boinc     36292 Oct 12 20:13 runpilot2-wrapper.sh
[2025-10-13 09:44:53] -rw-r--r-- 1 boinc boinc       100 Oct 13 08:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 09:44:53] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 08:29 run_atlas
[2025-10-13 09:44:53] -rw-r--r-- 1 boinc boinc       105 Oct 13 08:29 job.xml
[2025-10-13 09:44:53] -rw-r--r-- 2 boinc boinc 221829066 Oct 13 08:29 EVNT.46676267._004390.pool.root.1
[2025-10-13 09:44:53] -rw-r--r-- 2 boinc boinc    569686 Oct 13 08:29 input.tar.gz
[2025-10-13 09:44:53] -rw-r--r-- 2 boinc boinc     15120 Oct 13 08:29 start_atlas.sh
[2025-10-13 09:44:53] drwxrwx--x 2 boinc boinc      4096 Oct 13 08:29 shared
[2025-10-13 09:44:53] -rw-r--r-- 1 boinc boinc         0 Oct 13 08:29 boinc_setup_complete
[2025-10-13 09:44:53] -rw-r--r-- 1 boinc boinc      6370 Oct 13 08:29 init_data.xml
[2025-10-13 09:44:53] -rw-r--r-- 1 boinc boinc         0 Oct 13 08:29 boinc_lockfile
[2025-10-13 09:44:53] -rw-r--r-- 1 boinc boinc      2550 Oct 13 08:29 pandaJob.out
[2025-10-13 09:44:53] -rw------- 1 boinc boinc    973230 Oct 13 08:29 agis_schedconf.cvmfs.json
[2025-10-13 09:44:53] -rw------- 1 boinc boinc   1560580 Oct 13 08:29 agis_ddmendpoints.agis.ALL.json
[2025-10-13 09:44:53] drwx------ 5 boinc boinc      4096 Oct 13 08:29 pilot3
[2025-10-13 09:44:53] -rw-r--r-- 1 boinc boinc       529 Oct 13 09:43 boinc_task_state.xml
[2025-10-13 09:44:53] -rw------- 1 boinc boinc 200626154 Oct 13 09:43 HITS.46676269._085749.pool.root.1
[2025-10-13 09:44:53] -rw------- 1 boinc boinc      1022 Oct 13 09:43 memory_monitor_summary.json
[2025-10-13 09:44:53] -rw------- 1 boinc boinc    250804 Oct 13 09:43 log.46676269._085749.job.log.tgz.1
[2025-10-13 09:44:53] -rw------- 1 boinc boinc      7776 Oct 13 09:44 heartbeat.json
[2025-10-13 09:44:53] -rw-r--r-- 1 boinc boinc        27 Oct 13 09:44 wrapper_checkpoint.txt
[2025-10-13 09:44:53] -rw-r--r-- 1 boinc boinc      8192 Oct 13 09:44 boinc_mmap_file
[2025-10-13 09:44:53] -rw------- 1 boinc boinc        95 Oct 13 09:44 pilot_heartbeat.json
[2025-10-13 09:44:53] -rw------- 1 boinc boinc      4823 Oct 13 09:44 pilotlog.txt
[2025-10-13 09:44:53] -rw------- 1 boinc boinc    659516 Oct 13 09:44 log.46676269._085749.job.log.1
[2025-10-13 09:44:53] -rw------- 1 boinc boinc       357 Oct 13 09:44 output.list
[2025-10-13 09:44:53] -rw-r--r-- 1 boinc boinc       620 Oct 13 09:44 runtime_log
[2025-10-13 09:44:53] -rw------- 1 boinc boinc    931840 Oct 13 09:44 result.tar.gz
[2025-10-13 09:44:53] -rw------- 1 boinc boinc       661 Oct 13 09:44 yQTKDmTkFS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmsfUMDmIf9gOm.diag
[2025-10-13 09:44:53] -rw-r--r-- 1 boinc boinc      8792 Oct 13 09:44 runtime_log.err
[2025-10-13 09:44:53] -rw-r--r-- 1 boinc boinc      6358 Oct 13 09:44 stderr.txt
[2025-10-13 09:44:53] HITS file was successfully produced:
[2025-10-13 09:44:53] -rw------- 1 boinc boinc 200626154 Oct 13 09:43 shared/HITS.pool.root.1
[2025-10-13 09:44:53]  *** Contents of shared directory: ***
[2025-10-13 09:44:53] total 414052
[2025-10-13 09:44:53] -rw-r--r-- 2 boinc boinc 221829066 Oct 13 08:29 ATLAS.root_0
[2025-10-13 09:44:53] -rw-r--r-- 2 boinc boinc    569686 Oct 13 08:29 input.tar.gz
[2025-10-13 09:44:53] -rw-r--r-- 2 boinc boinc     15120 Oct 13 08:29 start_atlas.sh
[2025-10-13 09:44:53] -rw------- 1 boinc boinc 200626154 Oct 13 09:43 HITS.pool.root.1
[2025-10-13 09:44:53] -rw------- 1 boinc boinc    931840 Oct 13 09:44 result.tar.gz
09:44:55 (561524): run_atlas exited; CPU time 16859.140911
09:44:55 (561524): called boinc_finish(0)

</stderr_txt>
]]>

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