Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:33:43 (2743999): wrapper (7.7.26015): starting
06:33:43 (2743999): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 06:33:43] Arguments: --nthreads 3
[2025-10-13 06:33:43] Threads: 3
[2025-10-13 06:33:43] Checking for CVMFS
[2025-10-13 06:33:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 06:33:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 06:33:43] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 06:33:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 06:33:43] 2.9.2.0 1632445 3778 83444 151649 1 57 28955189 36864000 0 130560 0 2895742 99.991 139828 801 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 06:33:43] CVMFS is ok
[2025-10-13 06:33:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 06:33:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 06:33:43] Further information can be found at the LHC@home message board.
[2025-10-13 06:33:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 06:33:43] Checking for apptainer binary...
[2025-10-13 06:33:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 06:33:43] Running /usr/bin/apptainer --version
[2025-10-13 06:33:43] apptainer version 1.4.1-1.1
[2025-10-13 06:33:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 06:33:43] atlasA223b
[2025-10-13 06:33:43] apptainer works
[2025-10-13 06:33:43] Set ATHENA_PROC_NUMBER=3
[2025-10-13 06:33:43] Set ATHENA_CORE_NUMBER=3
[2025-10-13 06:33:43] Starting ATLAS job with PandaID=6840389987
[2025-10-13 06:33:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 07:58:08]  *** The last 200 lines of the pilot log: ***
[2025-10-13 07:58:08] 2025-10-13 05:57:36,184 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 07:58:08] 2025-10-13 05:57:36,184 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 07:58:08] 2025-10-13 05:57:36,184 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 07:58:08] 2025-10-13 05:57:36,184 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 07:58:08] 2025-10-13 05:57:36,184 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 07:58:08] 2025-10-13 05:57:36,184 | INFO     | job 6840389987 has completed (purged errors)
[2025-10-13 07:58:08] 2025-10-13 05:57:36,184 | INFO     | overall cleanup function is called
[2025-10-13 07:58:08] 2025-10-13 05:57:37,191 | INFO     | --- collectZombieJob: --- 10, [2754152]
[2025-10-13 07:58:08] 2025-10-13 05:57:37,191 | INFO     | zombie collector waiting for pid 2754152
[2025-10-13 07:58:08] 2025-10-13 05:57:37,191 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 07:58:08] 2025-10-13 05:57:37,191 | INFO     | collected zombie processes
[2025-10-13 07:58:08] 2025-10-13 05:57:37,191 | INFO     | will attempt to kill all subprocesses of pid=2754152
[2025-10-13 07:58:08] 2025-10-13 05:57:37,245 | INFO     | process IDs to be killed: [2754152] (in reverse order)
[2025-10-13 07:58:08] 2025-10-13 05:57:37,275 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 07:58:08] 2025-10-13 05:57:37,275 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 07:58:08] 2025-10-13 05:57:37,277 | INFO     | did not find any defunct processes belonging to 2754152
[2025-10-13 07:58:08] 2025-10-13 05:57:37,278 | INFO     | did not find any defunct processes belonging to 2754152
[2025-10-13 07:58:08] 2025-10-13 05:57:37,278 | INFO     | ready for new job
[2025-10-13 07:58:08] 2025-10-13 05:57:37,278 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 07:58:08] 2025-10-13 05:57:37,279 | INFO     | ***************************************
[2025-10-13 07:58:08] 2025-10-13 05:57:37,279 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 07:58:08] 2025-10-13 05:57:37,279 | INFO     | ***************************************
[2025-10-13 07:58:08] 2025-10-13 05:57:37,279 | INFO     | 
[2025-10-13 07:58:08] 2025-10-13 05:57:37,279 | INFO     | architecture information:
[2025-10-13 07:58:08] 2025-10-13 05:57:37,279 | INFO     | executing command: cat /etc/os-release
[2025-10-13 07:58:08] 2025-10-13 05:57:37,289 | INFO     | cat /etc/os-release:
[2025-10-13 07:58:08] NAME="CentOS Linux"
[2025-10-13 07:58:08] VERSION="7 (Core)"
[2025-10-13 07:58:08] ID="centos"
[2025-10-13 07:58:08] ID_LIKE="rhel fedora"
[2025-10-13 07:58:08] VERSION_ID="7"
[2025-10-13 07:58:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 07:58:08] ANSI_COLOR="0;31"
[2025-10-13 07:58:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 07:58:08] HOME_URL="https://www.centos.org/"
[2025-10-13 07:58:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 07:58:08] 
[2025-10-13 07:58:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 07:58:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 07:58:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 07:58:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 07:58:08] 
[2025-10-13 07:58:08] 2025-10-13 05:57:37,289 | INFO     | ***************************************
[2025-10-13 07:58:08] 2025-10-13 05:57:37,792 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 07:58:08] 2025-10-13 05:57:37,807 | INFO     | sufficient remaining disk space (375948050432 B)
[2025-10-13 07:58:08] 2025-10-13 05:57:37,807 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 07:58:08] 2025-10-13 05:57:37,807 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 07:58:08] 2025-10-13 05:57:37,807 | INFO     | update_server=False
[2025-10-13 07:58:08] 2025-10-13 05:57:37,807 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 07:58:08] 2025-10-13 05:57:37,807 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:58:08] 2025-10-13 05:57:37,807 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 07:58:08] 2025-10-13 05:57:38,045 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 07:58:08] 2025-10-13 05:57:38,045 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 07:58:08] 2025-10-13 05:57:38,045 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:58:08] 2025-10-13 05:57:38,046 | INFO     | will abort loop
[2025-10-13 07:58:08] 2025-10-13 05:57:38,092 | INFO     | all job control threads have been joined
[2025-10-13 07:58:08] 2025-10-13 05:57:38,117 | INFO     | all data control threads have been joined
[2025-10-13 07:58:08] 2025-10-13 05:57:38,677 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 07:58:08] 2025-10-13 05:57:38,813 | INFO     | [job] queue monitor thread has finished
[2025-10-13 07:58:08] 2025-10-13 05:57:38,813 | INFO     | [job] retrieve thread has finished
[2025-10-13 07:58:08] 2025-10-13 05:57:38,843 | INFO     | all payload control threads have been joined
[2025-10-13 07:58:08] 2025-10-13 05:57:39,051 | INFO     | [job] job monitor thread has finished
[2025-10-13 07:58:08] 2025-10-13 05:57:39,059 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 07:58:08] 2025-10-13 05:57:39,098 | INFO     | [job] control thread has finished
[2025-10-13 07:58:08] 2025-10-13 05:57:39,122 | INFO     | [data] control thread has finished
[2025-10-13 07:58:08] 2025-10-13 05:57:39,373 | INFO     | [payload] failed_post thread has finished
[2025-10-13 07:58:08] 2025-10-13 05:57:39,810 | INFO     | [data] copytool_out thread has finished
[2025-10-13 07:58:08] 2025-10-13 05:57:39,848 | INFO     | [payload] control thread has finished
[2025-10-13 07:58:08] 2025-10-13 05:57:39,904 | INFO     | [payload] validate_post thread has finished
[2025-10-13 07:58:08] 2025-10-13 05:57:39,958 | INFO     | [data] copytool_in thread has finished
[2025-10-13 07:58:08] 2025-10-13 05:57:40,196 | INFO     | [job] validate thread has finished
[2025-10-13 07:58:08] 2025-10-13 05:57:40,265 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 07:58:08] 2025-10-13 05:57:40,265 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 07:58:08] 2025-10-13 05:57:42,685 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 07:58:08] 2025-10-13 05:57:48,027 | INFO     | job.realtimelogging is not enabled
[2025-10-13 07:58:08] 2025-10-13 05:57:49,033 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 07:58:08] 2025-10-13 05:57:55,514 | INFO     | [monitor] cgroup control has ended
[2025-10-13 07:58:08] 2025-10-13 05:57:56,623 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140204475266880)>', '<ExcThread(monitor, started 140203628947200)>']
[2025-10-13 07:58:08] 2025-10-13 05:58:01,649 | INFO     | all workflow threads have been joined
[2025-10-13 07:58:08] 2025-10-13 05:58:01,649 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 07:58:08] 2025-10-13 05:58:01,649 | INFO     | traces error code: 0
[2025-10-13 07:58:08] 2025-10-13 05:58:01,649 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 07:58:08] 2025-10-13 05:58:07,881 | INFO     | PID=2747716 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 07:58:08] 2025-10-13 05:58:07,881 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 07:58:08] 2025-10-13 05:58:07,881 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 07:58:08] 2025-10-13 05:58:07,881 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 07:58:08] 2025-10-13 05:58:07,882 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 07:58:08] 2025-10-13 05:58:07,882 | INFO     | [monitor] control thread has ended
[2025-10-13 07:58:08] 2025-10-13 05:58:07,931 [wrapper] ==== pilot stdout END ====
[2025-10-13 07:58:08] 2025-10-13 05:58:07,933 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 07:58:08] 2025-10-13 05:58:07,936 [wrapper] pilotpid: 2747716
[2025-10-13 07:58:08] 2025-10-13 05:58:07,938 [wrapper] Pilot exit status: 0
[2025-10-13 07:58:08] 2025-10-13 05:58:07,946 [wrapper] pandaids: 6840389987
[2025-10-13 07:58:08] 2025-10-13 05:58:07,966 [wrapper] cleanup supervisor_pilot 2766076 2747717
[2025-10-13 07:58:08] 2025-10-13 05:58:07,968 [wrapper] Test setup, not cleaning
[2025-10-13 07:58:08] 2025-10-13 05:58:07,971 [wrapper] apfmon messages muted
[2025-10-13 07:58:08] 2025-10-13 05:58:07,973 [wrapper] ==== wrapper stdout END ====
[2025-10-13 07:58:08] 2025-10-13 05:58:07,975 [wrapper] ==== wrapper stderr END ====
[2025-10-13 07:58:08]  *** Error codes and diagnostics ***
[2025-10-13 07:58:08]     "exeErrorCode": 0,
[2025-10-13 07:58:08]     "exeErrorDiag": "",
[2025-10-13 07:58:08]     "pilotErrorCode": 0,
[2025-10-13 07:58:08]     "pilotErrorDiag": "",
[2025-10-13 07:58:08]  *** Listing of results directory ***
[2025-10-13 07:58:08] total 409756
[2025-10-13 07:58:08] -rw-r--r-- 1 boinc boinc    557409 Oct 12 18:01 pilot3.tar.gz
[2025-10-13 07:58:08] -rw-r--r-- 1 boinc boinc      5112 Oct 12 18:08 queuedata.json
[2025-10-13 07:58:08] -rwx------ 1 boinc boinc     36292 Oct 12 18:08 runpilot2-wrapper.sh
[2025-10-13 07:58:08] -rw-r--r-- 1 boinc boinc       100 Oct 13 06:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 07:58:08] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 06:33 run_atlas
[2025-10-13 07:58:08] -rw-r--r-- 1 boinc boinc       105 Oct 13 06:33 job.xml
[2025-10-13 07:58:08] -rw-r--r-- 2 boinc boinc 221945825 Oct 13 06:33 EVNT.46676267._001894.pool.root.1
[2025-10-13 07:58:08] -rw-r--r-- 2 boinc boinc    569687 Oct 13 06:33 input.tar.gz
[2025-10-13 07:58:08] -rw-r--r-- 2 boinc boinc     15120 Oct 13 06:33 start_atlas.sh
[2025-10-13 07:58:08] drwxrwx--x 2 boinc boinc      4096 Oct 13 06:33 shared
[2025-10-13 07:58:08] -rw-r--r-- 1 boinc boinc         0 Oct 13 06:33 boinc_setup_complete
[2025-10-13 07:58:08] -rw-r--r-- 1 boinc boinc      6449 Oct 13 06:33 init_data.xml
[2025-10-13 07:58:08] -rw-r--r-- 1 boinc boinc         0 Oct 13 06:33 boinc_lockfile
[2025-10-13 07:58:08] -rw-r--r-- 1 boinc boinc      2550 Oct 13 06:33 pandaJob.out
[2025-10-13 07:58:08] -rw------- 1 boinc boinc    974365 Oct 13 06:33 agis_schedconf.cvmfs.json
[2025-10-13 07:58:08] -rw------- 1 boinc boinc   1560580 Oct 13 06:33 agis_ddmendpoints.agis.ALL.json
[2025-10-13 07:58:08] drwx------ 5 boinc boinc      4096 Oct 13 06:33 pilot3
[2025-10-13 07:58:08] -rw------- 1 boinc boinc 191795039 Oct 13 07:57 HITS.46676269._083113.pool.root.1
[2025-10-13 07:58:08] -rw-r--r-- 1 boinc boinc       530 Oct 13 07:57 boinc_task_state.xml
[2025-10-13 07:58:08] -rw------- 1 boinc boinc        95 Oct 13 07:57 pilot_heartbeat.json
[2025-10-13 07:58:08] -rw------- 1 boinc boinc      1017 Oct 13 07:57 memory_monitor_summary.json
[2025-10-13 07:58:08] -rw------- 1 boinc boinc    248922 Oct 13 07:57 log.46676269._083113.job.log.tgz.1
[2025-10-13 07:58:08] -rw------- 1 boinc boinc      7758 Oct 13 07:57 heartbeat.json
[2025-10-13 07:58:08] -rw-r--r-- 1 boinc boinc      8192 Oct 13 07:57 boinc_mmap_file
[2025-10-13 07:58:08] -rw-r--r-- 1 boinc boinc        27 Oct 13 07:57 wrapper_checkpoint.txt
[2025-10-13 07:58:08] -rw------- 1 boinc boinc       747 Oct 13 07:58 pilotlog.txt
[2025-10-13 07:58:08] -rw------- 1 boinc boinc    736567 Oct 13 07:58 log.46676269._083113.job.log.1
[2025-10-13 07:58:08] -rw------- 1 boinc boinc       357 Oct 13 07:58 output.list
[2025-10-13 07:58:08] -rw-r--r-- 1 boinc boinc       620 Oct 13 07:58 runtime_log
[2025-10-13 07:58:08] -rw------- 1 boinc boinc   1003520 Oct 13 07:58 result.tar.gz
[2025-10-13 07:58:08] -rw-r--r-- 1 boinc boinc      8797 Oct 13 07:58 runtime_log.err
[2025-10-13 07:58:08] -rw------- 1 boinc boinc       662 Oct 13 07:58 K0jLDmVnDS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmtNUMDmQ42ztn.diag
[2025-10-13 07:58:08] -rw-r--r-- 1 boinc boinc     11643 Oct 13 07:58 stderr.txt
[2025-10-13 07:58:08] HITS file was successfully produced:
[2025-10-13 07:58:08] -rw------- 1 boinc boinc 191795039 Oct 13 07:57 shared/HITS.pool.root.1
[2025-10-13 07:58:08]  *** Contents of shared directory: ***
[2025-10-13 07:58:08] total 405608
[2025-10-13 07:58:08] -rw-r--r-- 2 boinc boinc 221945825 Oct 13 06:33 ATLAS.root_0
[2025-10-13 07:58:08] -rw-r--r-- 2 boinc boinc    569687 Oct 13 06:33 input.tar.gz
[2025-10-13 07:58:08] -rw-r--r-- 2 boinc boinc     15120 Oct 13 06:33 start_atlas.sh
[2025-10-13 07:58:08] -rw------- 1 boinc boinc 191795039 Oct 13 07:57 HITS.pool.root.1
[2025-10-13 07:58:08] -rw------- 1 boinc boinc   1003520 Oct 13 07:58 result.tar.gz
07:58:09 (2743999): run_atlas exited; CPU time 14414.090099
07:58:09 (2743999): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN