Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:01:03 (3845619): wrapper (7.7.26015): starting
17:01:03 (3845619): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 17:01:03] Arguments: --nthreads 8
[2025-10-12 17:01:03] Threads: 8
[2025-10-12 17:01:03] Checking for CVMFS
[2025-10-12 17:01:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 17:01:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 17:01:05] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 17:01:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 17:01:05] 2.13.2.0 100689 138626 617772 151636 1 812 25495940 32935937 54447 16776704 0 619128335 99.671 548146576 19033 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 17:01:05] CVMFS is ok
[2025-10-12 17:01:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 17:01:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 17:01:05] Further information can be found at the LHC@home message board.
[2025-10-12 17:01:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 17:01:05] Checking for apptainer binary...
[2025-10-12 17:01:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 17:01:05] Running /usr/bin/apptainer --version
[2025-10-12 17:01:05] apptainer version 1.4.3-1.el9
[2025-10-12 17:01:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 17:01:06] c7-2-38.aglt2.org
[2025-10-12 17:01:06] apptainer works
[2025-10-12 17:01:06] Set ATHENA_PROC_NUMBER=8
[2025-10-12 17:01:06] Set ATHENA_CORE_NUMBER=8
[2025-10-12 17:01:06] Starting ATLAS job with PandaID=6840225886
[2025-10-12 17:01:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 18:38:10]  *** The last 200 lines of the pilot log: ***
[2025-10-12 18:38:10] 2025-10-12 22:37:22,708 | INFO     | adding to output.list: log.46676269._082926.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/eb/be/log.46676269._082926.job.log.tg
[2025-10-12 18:38:10] 2025-10-12 22:37:22,708 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 18:38:10] 2025-10-12 22:37:22,708 | INFO     | summary of transferred files:
[2025-10-12 18:38:10] 2025-10-12 22:37:22,708 | INFO     |  -- lfn=log.46676269._082926.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 18:38:10] 2025-10-12 22:37:22,709 | INFO     | stage-out finished correctly
[2025-10-12 18:38:10] 2025-10-12 22:37:24,305 | INFO     | PID=3853511 has CPU usage=13.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-12 18:38:10] 2025-10-12 22:37:24,305 | INFO     | .. there are 64 such processes running
[2025-10-12 18:38:10] 2025-10-12 22:37:24,388 | WARNING  | process 3869814 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 18:38:10] 2025-10-12 22:37:24,388 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6840225886/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 18:38:10] 2025-10-12 22:37:24,878 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 18:38:10] 2025-10-12 22:37:25,325 | INFO     | time since job start (5738s) is within the limit (172800.0s)
[2025-10-12 18:38:10] 2025-10-12 22:37:25,349 | INFO     | number of running child processes to parent process 3869814: 1
[2025-10-12 18:38:10] 2025-10-12 22:37:25,349 | INFO     | maximum number of monitored processes: 6
[2025-10-12 18:38:10] 2025-10-12 22:37:25,935 | INFO     | job 6840225886 has state=finished
[2025-10-12 18:38:10] 2025-10-12 22:37:25,935 | INFO     | preparing for final server update for job 6840225886 in state='finished'
[2025-10-12 18:38:10] 2025-10-12 22:37:25,936 | INFO     | this job has now completed (state=finished)
[2025-10-12 18:38:10] 2025-10-12 22:37:25,936 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 18:38:10] 2025-10-12 22:37:25,936 | INFO     | log transfer has been attempted: DONE
[2025-10-12 18:38:10] 2025-10-12 22:37:25,936 | INFO     | job 6840225886 has finished - writing final server update
[2025-10-12 18:38:10] 2025-10-12 22:37:25,936 | INFO     | total number of processed events: 400 (read)
[2025-10-12 18:38:10] 2025-10-12 22:37:25,937 | INFO     | executing command: lscpu
[2025-10-12 18:38:10] 2025-10-12 22:37:26,049 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 18:38:10] 2025-10-12 22:37:27,332 | INFO     | time since job start (5740s) is within the limit (172800.0s)
[2025-10-12 18:38:10] 2025-10-12 22:37:27,856 | INFO     | monitor loop #365: job 0:6840225886 is in state 'finished'
[2025-10-12 18:38:10] 2025-10-12 22:37:27,856 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:38:10] 2025-10-12 22:37:29,338 | INFO     | time since job start (5742s) is within the limit (172800.0s)
[2025-10-12 18:38:10] 2025-10-12 22:37:30,362 | INFO     | monitor loop #366: job 0:6840225886 is in state 'finished'
[2025-10-12 18:38:10] 2025-10-12 22:37:30,362 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:38:10] 2025-10-12 22:37:31,344 | INFO     | time since job start (5744s) is within the limit (172800.0s)
[2025-10-12 18:38:10] 2025-10-12 22:37:32,868 | INFO     | monitor loop #367: job 0:6840225886 is in state 'finished'
[2025-10-12 18:38:10] 2025-10-12 22:37:32,868 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:38:10] 2025-10-12 22:37:33,373 | INFO     | time since job start (5746s) is within the limit (172800.0s)
[2025-10-12 18:38:10] 2025-10-12 22:37:35,372 | INFO     | monitor loop #368: job 0:6840225886 is in state 'finished'
[2025-10-12 18:38:10] 2025-10-12 22:37:35,373 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:38:10] 2025-10-12 22:37:35,380 | INFO     | time since job start (5748s) is within the limit (172800.0s)
[2025-10-12 18:38:10] 2025-10-12 22:37:35,961 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 18:38:10] 2025-10-12 22:37:35,981 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3550.7490312499995
[2025-10-12 18:38:10] 2025-10-12 22:37:35,992 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6840225886/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 18:38:10] 2025-10-12 22:37:35,993 | INFO     | extracted standard info from prmon json
[2025-10-12 18:38:10] 2025-10-12 22:37:35,993 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 18:38:10] 2025-10-12 22:37:35,993 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 18:38:10] 2025-10-12 22:37:35,993 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 18:38:10] 2025-10-12 22:37:35,993 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 18:38:10] 2025-10-12 22:37:35,994 | INFO     | fitting pss+swap vs Time
[2025-10-12 18:38:10] 2025-10-12 22:37:35,995 | INFO     | sum of square deviations: 197213709.08139488
[2025-10-12 18:38:10] 2025-10-12 22:37:35,995 | INFO     | sum of deviations: -650362982.6744188
[2025-10-12 18:38:10] 2025-10-12 22:37:35,995 | INFO     | mean x: 1760305879.5697675
[2025-10-12 18:38:10] 2025-10-12 22:37:35,995 | INFO     | mean y: 2180719.2790697673
[2025-10-12 18:38:10] 2025-10-12 22:37:35,995 | INFO     | -- intersect: 5807242586.371727
[2025-10-12 18:38:10] 2025-10-12 22:37:35,995 | INFO     | intersect: 5807242586.371727
[2025-10-12 18:38:10] 2025-10-12 22:37:35,995 | INFO     | chi2: 0.03964993927783261
[2025-10-12 18:38:10] 2025-10-12 22:37:35,995 | INFO     | -- intersect: 5807242586.371727
[2025-10-12 18:38:10] 2025-10-12 22:37:35,996 | INFO     | current memory leak: -3.30 B/s (using 86 data points, chi2=0.04)
[2025-10-12 18:38:10] 2025-10-12 22:37:35,996 | INFO     | could have reported an average CPU frequency of 3549 MHz (7 samples)
[2025-10-12 18:38:10] 2025-10-12 22:37:35,996 | INFO     | ..............................
[2025-10-12 18:38:10] 2025-10-12 22:37:35,996 | INFO     | . Timing measurements:
[2025-10-12 18:38:10] 2025-10-12 22:37:35,996 | INFO     | . get job = 0 s
[2025-10-12 18:38:10] 2025-10-12 22:37:35,996 | INFO     | . initial setup = 4 s
[2025-10-12 18:38:10] 2025-10-12 22:37:35,996 | INFO     | . payload setup = 26 s
[2025-10-12 18:38:10] 2025-10-12 22:37:35,996 | INFO     | . stage-in = 0 s
[2025-10-12 18:38:10] 2025-10-12 22:37:35,996 | INFO     | . payload execution = 5663 s
[2025-10-12 18:38:10] 2025-10-12 22:37:35,996 | INFO     | . stage-out = 0 s
[2025-10-12 18:38:10] 2025-10-12 22:37:35,996 | INFO     | . log creation = 0 s
[2025-10-12 18:38:10] 2025-10-12 22:37:35,996 | INFO     | ..............................
[2025-10-12 18:38:10] 2025-10-12 22:37:36,139 | INFO     | 
[2025-10-12 18:38:10] 2025-10-12 22:37:36,139 | INFO     | job summary report
[2025-10-12 18:38:10] 2025-10-12 22:37:36,139 | INFO     | --------------------------------------------------
[2025-10-12 18:38:10] 2025-10-12 22:37:36,139 | INFO     | PanDA job id: 6840225886
[2025-10-12 18:38:10] 2025-10-12 22:37:36,139 | INFO     | task id: 46676269
[2025-10-12 18:38:10] 2025-10-12 22:37:36,139 | INFO     | errors: (none)
[2025-10-12 18:38:10] 2025-10-12 22:37:36,139 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 18:38:10] 2025-10-12 22:37:36,140 | INFO     | pilot state: finished 
[2025-10-12 18:38:10] 2025-10-12 22:37:36,140 | INFO     | transexitcode: 0
[2025-10-12 18:38:10] 2025-10-12 22:37:36,140 | INFO     | exeerrorcode: 0
[2025-10-12 18:38:10] 2025-10-12 22:37:36,140 | INFO     | exeerrordiag: 
[2025-10-12 18:38:10] 2025-10-12 22:37:36,140 | INFO     | exitcode: 0
[2025-10-12 18:38:10] 2025-10-12 22:37:36,140 | INFO     | exitmsg: OK
[2025-10-12 18:38:10] 2025-10-12 22:37:36,140 | INFO     | cpuconsumptiontime: 29089 s
[2025-10-12 18:38:10] 2025-10-12 22:37:36,140 | INFO     | nevents: 400
[2025-10-12 18:38:10] 2025-10-12 22:37:36,140 | INFO     | neventsw: 0
[2025-10-12 18:38:10] 2025-10-12 22:37:36,140 | INFO     | pid: 3869814
[2025-10-12 18:38:10] 2025-10-12 22:37:36,140 | INFO     | pgrp: 3869814
[2025-10-12 18:38:10] 2025-10-12 22:37:36,140 | INFO     | corecount: 8
[2025-10-12 18:38:10] 2025-10-12 22:37:36,140 | INFO     | event service: False
[2025-10-12 18:38:10] 2025-10-12 22:37:36,140 | INFO     | sizes: {0: 2348857, 1: 2348857, 11: 2348885, 14: 2349175, 22: 2349203, 5693: 2375926, 5695: 2384924, 5697: 2384980, 5708: 2385174}
[2025-10-12 18:38:10] 2025-10-12 22:37:36,141 | INFO     | --------------------------------------------------
[2025-10-12 18:38:10] 2025-10-12 22:37:36,141 | INFO     | 
[2025-10-12 18:38:10] 2025-10-12 22:37:36,141 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-12 18:38:10] 2025-10-12 22:37:36,161 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 18:38:10] 2025-10-12 22:37:36,162 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 18:38:10] 2025-10-12 22:37:36,162 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 18:38:10] 2025-10-12 22:37:36,162 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 18:38:10] 2025-10-12 22:37:36,162 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 18:38:10] 2025-10-12 22:37:36,162 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 18:38:10] 2025-10-12 22:37:36,162 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 18:38:10] 2025-10-12 22:37:36,162 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 18:38:10] 2025-10-12 22:37:36,162 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 18:38:10] 2025-10-12 22:37:36,162 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 18:38:10] 2025-10-12 22:37:36,162 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 18:38:10] 2025-10-12 22:37:36,162 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 18:38:10] 2025-10-12 22:37:36,162 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 18:38:10] 2025-10-12 22:37:36,162 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 18:38:10] 2025-10-12 22:37:36,162 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 18:38:10] 2025-10-12 22:37:36,162 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 18:38:10] 2025-10-12 22:37:36,162 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 18:38:10] 2025-10-12 22:37:36,163 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 18:38:10] 2025-10-12 22:37:36,163 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 18:38:10] 2025-10-12 22:37:36,163 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 18:38:10] 2025-10-12 22:37:36,163 | INFO     | job 6840225886 has completed (purged errors)
[2025-10-12 18:38:10] 2025-10-12 22:37:36,163 | INFO     | overall cleanup function is called
[2025-10-12 18:38:10] 2025-10-12 22:37:37,172 | INFO     | --- collectZombieJob: --- 10, [3869814]
[2025-10-12 18:38:10] 2025-10-12 22:37:37,172 | INFO     | zombie collector waiting for pid 3869814
[2025-10-12 18:38:10] 2025-10-12 22:37:37,172 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 18:38:10] 2025-10-12 22:37:37,173 | INFO     | collected zombie processes
[2025-10-12 18:38:10] 2025-10-12 22:37:37,173 | INFO     | will attempt to kill all subprocesses of pid=3869814
[2025-10-12 18:38:10] 2025-10-12 22:37:37,903 | INFO     | process IDs to be killed: [3869814] (in reverse order)
[2025-10-12 18:38:10] 2025-10-12 22:37:38,123 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 18:38:10] 2025-10-12 22:37:38,125 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 18:38:10] 2025-10-12 22:37:38,192 | INFO     | did not find any defunct processes belonging to 3869814
[2025-10-12 18:38:10] 2025-10-12 22:37:38,217 | INFO     | did not find any defunct processes belonging to 3869814
[2025-10-12 18:38:10] 2025-10-12 22:37:38,217 | INFO     | ready for new job
[2025-10-12 18:38:10] 2025-10-12 22:37:38,217 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 18:38:10] 2025-10-12 22:37:38,218 | INFO     | ***************************************
[2025-10-12 18:38:10] 2025-10-12 22:37:38,219 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 18:38:10] 2025-10-12 22:37:38,219 | INFO     | ***************************************
[2025-10-12 18:38:10] 2025-10-12 22:37:38,219 | INFO     | 
[2025-10-12 18:38:10] 2025-10-12 22:37:38,240 | INFO     | architecture information:
[2025-10-12 18:38:10] 2025-10-12 22:37:38,246 | INFO     | executing command: cat /etc/os-release
[2025-10-12 18:38:10] 2025-10-12 22:37:38,265 | INFO     | cat /etc/os-release:
[2025-10-12 18:38:10] NAME="CentOS Linux"
[2025-10-12 18:38:10] VERSION="7 (Core)"
[2025-10-12 18:38:10] ID="centos"
[2025-10-12 18:38:10] ID_LIKE="rhel fedora"
[2025-10-12 18:38:10] VERSION_ID="7"
[2025-10-12 18:38:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 18:38:10] ANSI_COLOR="0;31"
[2025-10-12 18:38:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 18:38:10] HOME_URL="https://www.centos.org/"
[2025-10-12 18:38:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 18:38:10] 
[2025-10-12 18:38:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 18:38:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 18:38:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 18:38:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 18:38:10] 
[2025-10-12 18:38:10] 2025-10-12 22:37:38,265 | INFO     | ***************************************
[2025-10-12 18:38:10] 2025-10-12 22:37:38,771 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-12 18:38:10] 2025-10-12 22:37:38,802 | INFO     | sufficient remaining disk space (73653026816 B)
[2025-10-12 18:38:10] 2025-10-12 22:37:38,802 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 18:38:10] 2025-10-12 22:37:38,802 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 18:38:10] 2025-10-12 22:37:38,802 | INFO     | update_server=False
[2025-10-12 18:38:10] 2025-10-12 22:37:38,802 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 18:38:10] 2025-10-12 22:37:38,802 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 18:38:10] 2025-10-12 22:37:38,885 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:38:10] 2025-10-12 22:37:38,885 | INFO     | aborting loop
[2025-10-12 18:38:10] 2025-10-12 22:37:39,020 | INFO     | all payload control threads have been joined
[2025-10-12 18:38:10] 2025-10-12 22:37:39,572 | INFO     | all data control threads have been joined
[2025-10-12 18:38:10] 2025-10-12 22:37:39,697 | INFO     | all job control threads have been joined
[2025-10-12 18:38:10] 2025-10-12 22:37:39,822 | INFO     | [job] retrieve thread has finished
[2025-10-12 18:38:10] 2025-10-12 22:37:39,890 | INFO     | [job] job monitor thread has finished
[2025-10-12 18:38:10] 2025-10-12 22:37:40,026 | INFO     | [payload] control thread has finished
[2025-10-12 18:38:10] 2025-10-12 22:37:40,041 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 18:38:10] 2025-10-12 22:37:40,072 | INFO     | [payload] failed_post thread has finished
[2025-10-12 18:38:10] 2025-10-12 22:37:40,337 | INFO     | [job] validate thread has finished
[2025-10-12 18:38:10] 2025-10-12 22:37:40,520 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 18:38:10] 2025-10-12 22:37:40,592 | INFO     | [data] control thread has finished
[2025-10-12 18:38:10] 2025-10-12 22:37:40,703 | INFO     | [job] control thread has finished
[2025-10-12 18:38:10] 2025-10-12 22:37:40,804 | INFO     | [data] copytool_in thread has finished
[2025-10-12 18:38:10] 2025-10-12 22:37:40,822 | INFO     | [data] copytool_out thread has finished
[2025-10-12 18:38:10] 2025-10-12 22:37:40,930 | INFO     | [payload] validate_post thread has finished
[2025-10-12 18:38:10] 2025-10-12 22:37:41,141 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 18:38:10] 2025-10-12 22:37:41,163 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:38:10] 2025-10-12 22:37:41,240 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 18:38:10] 2025-10-12 22:37:42,169 | INFO     | [job] queue monitor thread has finished
[2025-10-12 18:38:10] 2025-10-12 22:37:44,051 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 18:38:10] 2025-10-12 22:37:49,049 | INFO     | job.realtimelogging is not enabled
[2025-10-12 18:38:10] 2025-10-12 22:37:50,055 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 18:38:10] 2025-10-12 22:37:56,847 | INFO     | [monitor] cgroup control has ended
[2025-10-12 18:38:10] 2025-10-12 22:37:58,649 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139696134518592)>', '<ExcThread(monitor, started 139695774209792)>']
[2025-10-12 18:38:10] 2025-10-12 22:38:03,675 | INFO     | all workflow threads have been joined
[2025-10-12 18:38:10] 2025-10-12 22:38:03,678 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 18:38:10] 2025-10-12 22:38:03,678 | INFO     | traces error code: 0
[2025-10-12 18:38:10] 2025-10-12 22:38:03,678 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 18:38:10] 2025-10-12 22:38:09,624 | INFO     | PID=3853511 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 18:38:10] 2025-10-12 22:38:09,625 | INFO     | .. there are 64 such processes running
[2025-10-12 18:38:10] 2025-10-12 22:38:09,626 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 18:38:10] 2025-10-12 22:38:09,626 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 18:38:10] 2025-10-12 22:38:09,626 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 18:38:10] 2025-10-12 22:38:09,626 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 18:38:10] 2025-10-12 22:38:09,626 | INFO     | [monitor] control thread has ended
[2025-10-12 18:38:10] 2025-10-12 22:38:09,779 [wrapper] ==== pilot stdout END ====
[2025-10-12 18:38:10] 2025-10-12 22:38:09,798 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 18:38:10] 2025-10-12 22:38:09,806 [wrapper] pilotpid: 3853511
[2025-10-12 18:38:10] 2025-10-12 22:38:09,809 [wrapper] Pilot exit status: 0
[2025-10-12 18:38:10] 2025-10-12 22:38:09,823 [wrapper] pandaids: 6840225886
[2025-10-12 18:38:10] 2025-10-12 22:38:09,968 [wrapper] cleanup supervisor_pilot  435536 3853512
[2025-10-12 18:38:10] 2025-10-12 22:38:09,980 [wrapper] Test setup, not cleaning
[2025-10-12 18:38:10] 2025-10-12 22:38:10,003 [wrapper] apfmon messages muted
[2025-10-12 18:38:10] 2025-10-12 22:38:10,005 [wrapper] ==== wrapper stdout END ====
[2025-10-12 18:38:10] 2025-10-12 22:38:10,007 [wrapper] ==== wrapper stderr END ====
[2025-10-12 18:38:10]  *** Error codes and diagnostics ***
[2025-10-12 18:38:10]     "exeErrorCode": 0,
[2025-10-12 18:38:10]     "exeErrorDiag": "",
[2025-10-12 18:38:10]     "pilotErrorCode": 0,
[2025-10-12 18:38:10]     "pilotErrorDiag": "",
[2025-10-12 18:38:10]  *** Listing of results directory ***
[2025-10-12 18:38:10] total 412724
[2025-10-12 18:38:10] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 11:59 queuedata.json
[2025-10-12 18:38:10] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 12:01 pilot3.tar.gz
[2025-10-12 18:38:10] -rwx------. 1 boincer umatlas     36292 Oct 12 12:01 runpilot2-wrapper.sh
[2025-10-12 18:38:10] -rw-r--r--. 1 boincer umatlas       100 Oct 12 17:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 18:38:10] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 17:01 run_atlas
[2025-10-12 18:38:10] -rw-r--r--. 1 boincer umatlas       105 Oct 12 17:01 job.xml
[2025-10-12 18:38:10] -rw-r--r--. 2 boincer umatlas 221648246 Oct 12 17:01 EVNT.46676267._004599.pool.root.1
[2025-10-12 18:38:10] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 17:01 start_atlas.sh
[2025-10-12 18:38:10] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 17:01 shared
[2025-10-12 18:38:10] -rw-r--r--. 2 boincer umatlas    569678 Oct 12 17:01 input.tar.gz
[2025-10-12 18:38:10] -rw-r--r--. 1 boincer umatlas         0 Oct 12 17:01 boinc_lockfile
[2025-10-12 18:38:10] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 17:01 pandaJob.out
[2025-10-12 18:38:10] -rw-------. 1 boincer umatlas    975536 Oct 12 17:01 agis_schedconf.cvmfs.json
[2025-10-12 18:38:10] -rw-------. 1 boincer umatlas   1560580 Oct 12 17:01 agis_ddmendpoints.agis.ALL.json
[2025-10-12 18:38:10] drwx------. 5 boincer umatlas      4096 Oct 12 17:01 pilot3
[2025-10-12 18:38:10] -rw-r--r--. 1 boincer umatlas      6933 Oct 12 18:27 init_data.xml
[2025-10-12 18:38:10] -rw-------. 1 boincer umatlas 194863581 Oct 12 18:36 HITS.46676269._082926.pool.root.1
[2025-10-12 18:38:10] -rw-r--r--. 1 boincer umatlas       529 Oct 12 18:36 boinc_task_state.xml
[2025-10-12 18:38:10] -rw-------. 1 boincer umatlas      1045 Oct 12 18:37 memory_monitor_summary.json
[2025-10-12 18:38:10] -rw-------. 1 boincer umatlas    337717 Oct 12 18:37 log.46676269._082926.job.log.tgz.1
[2025-10-12 18:38:10] -rw-------. 1 boincer umatlas      7769 Oct 12 18:37 heartbeat.json
[2025-10-12 18:38:10] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 18:38 boinc_mmap_file
[2025-10-12 18:38:10] -rw-r--r--. 1 boincer umatlas        27 Oct 12 18:38 wrapper_checkpoint.txt
[2025-10-12 18:38:10] -rw-------. 1 boincer umatlas        95 Oct 12 18:38 pilot_heartbeat.json
[2025-10-12 18:38:10] -rw-------. 1 boincer umatlas       823 Oct 12 18:38 pilotlog.txt
[2025-10-12 18:38:10] -rw-------. 1 boincer umatlas    767252 Oct 12 18:38 log.46676269._082926.job.log.1
[2025-10-12 18:38:10] -rw-------. 1 boincer umatlas       357 Oct 12 18:38 output.list
[2025-10-12 18:38:10] -rw-r--r--. 1 boincer umatlas       620 Oct 12 18:38 runtime_log
[2025-10-12 18:38:10] -rw-------. 1 boincer umatlas   1126400 Oct 12 18:38 result.tar.gz
[2025-10-12 18:38:10] -rw-r--r--. 1 boincer umatlas      8698 Oct 12 18:38 runtime_log.err
[2025-10-12 18:38:10] -rw-------. 1 boincer umatlas       651 Oct 12 18:38 ayoMDmKhDS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmTYkNDmjt8Okm.diag
[2025-10-12 18:38:10] -rw-r--r--. 1 boincer umatlas     22387 Oct 12 18:38 stderr.txt
[2025-10-12 18:38:10] HITS file was successfully produced:
[2025-10-12 18:38:10] -rw-------. 1 boincer umatlas 194863581 Oct 12 18:36 shared/HITS.pool.root.1
[2025-10-12 18:38:10]  *** Contents of shared directory: ***
[2025-10-12 18:38:10] total 408440
[2025-10-12 18:38:10] -rw-r--r--. 2 boincer umatlas 221648246 Oct 12 17:01 ATLAS.root_0
[2025-10-12 18:38:10] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 17:01 start_atlas.sh
[2025-10-12 18:38:10] -rw-r--r--. 2 boincer umatlas    569678 Oct 12 17:01 input.tar.gz
[2025-10-12 18:38:10] -rw-------. 1 boincer umatlas 194863581 Oct 12 18:36 HITS.pool.root.1
[2025-10-12 18:38:10] -rw-------. 1 boincer umatlas   1126400 Oct 12 18:38 result.tar.gz
18:38:12 (3845619): run_atlas exited; CPU time 29335.839128
18:38:12 (3845619): called boinc_finish(0)

</stderr_txt>
]]>

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