Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:29:54 (558590): wrapper (7.7.26015): starting
11:29:54 (558590): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 11:29:54] Arguments: --nthreads 4
[2025-10-13 11:29:54] Threads: 4
[2025-10-13 11:29:54] Checking for CVMFS
[2025-10-13 11:29:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 11:29:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 11:29:54] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 11:29:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 11:29:55] 2.9.2.0 2765228 5536 94704 151656 1 57 26788643 36864000 0 130560 0 4966580 99.992 189684 839 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 11:29:55] CVMFS is ok
[2025-10-13 11:29:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 11:29:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 11:29:55] Further information can be found at the LHC@home message board.
[2025-10-13 11:29:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 11:29:55] Checking for apptainer binary...
[2025-10-13 11:29:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 11:29:55] Running /usr/bin/apptainer --version
[2025-10-13 11:29:55] apptainer version 1.4.1-1.1
[2025-10-13 11:29:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 11:29:55] thA350a
[2025-10-13 11:29:55] apptainer works
[2025-10-13 11:29:55] Set ATHENA_PROC_NUMBER=4
[2025-10-13 11:29:55] Set ATHENA_CORE_NUMBER=4
[2025-10-13 11:29:55] Starting ATLAS job with PandaID=6840225853
[2025-10-13 11:29:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 12:41:15]  *** The last 200 lines of the pilot log: ***
[2025-10-13 12:41:15]  replicas=None
[2025-10-13 12:41:15]  scope=mc23_13p6TeV
[2025-10-13 12:41:15]  status=None
[2025-10-13 12:41:15]  status_code=0
[2025-10-13 12:41:15]  storage_token=
[2025-10-13 12:41:15]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6840225853/log.46676269._082893.job.log.tgz.1
[2025-10-13 12:41:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/62/88/log.46676269._082893.job.log.tgz.1
[2025-10-13 12:41:15]  workdir=None
[2025-10-13 12:41:15] ]
[2025-10-13 12:41:15] 2025-10-13 10:40:09,541 | INFO     | transferring file log.46676269._082893.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6840225853/log.46676269._082893.job.log.tgz.1 to /local/data/boinc/
[2025-10-13 12:41:15] 2025-10-13 10:40:09,541 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6840225853/log.46676269._082893.job.log.tgz.1 /local/data/boinc/slots/0/log.46676269._0828
[2025-10-13 12:41:15] 2025-10-13 10:40:09,559 | INFO     | adding to output.list: log.46676269._082893.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/62/88/log.46676269._082893.job.log.tg
[2025-10-13 12:41:15] 2025-10-13 10:40:09,560 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 12:41:15] 2025-10-13 10:40:09,560 | INFO     | summary of transferred files:
[2025-10-13 12:41:15] 2025-10-13 10:40:09,560 | INFO     |  -- lfn=log.46676269._082893.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 12:41:15] 2025-10-13 10:40:09,560 | INFO     | stage-out finished correctly
[2025-10-13 12:41:15] 2025-10-13 10:40:10,202 | INFO     | monitor loop #324: job 0:6840225853 is in state 'finished'
[2025-10-13 12:41:15] 2025-10-13 10:40:10,202 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 12:41:15] 2025-10-13 10:40:10,362 | INFO     | time since job start (4207s) is within the limit (172800.0s)
[2025-10-13 12:41:15] 2025-10-13 10:40:11,414 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 12:41:15] 2025-10-13 10:40:11,456 | INFO     | job 6840225853 has state=finished
[2025-10-13 12:41:15] 2025-10-13 10:40:11,456 | INFO     | preparing for final server update for job 6840225853 in state='finished'
[2025-10-13 12:41:15] 2025-10-13 10:40:12,033 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-13 12:41:15] 2025-10-13 10:40:12,034 | INFO     | this job has now completed (state=finished)
[2025-10-13 12:41:15] 2025-10-13 10:40:12,034 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 12:41:15] 2025-10-13 10:40:12,034 | INFO     | log transfer has been attempted: DONE
[2025-10-13 12:41:15] 2025-10-13 10:40:12,034 | INFO     | job 6840225853 has finished - writing final server update
[2025-10-13 12:41:15] 2025-10-13 10:40:12,034 | INFO     | total number of processed events: 400 (read)
[2025-10-13 12:41:15] 2025-10-13 10:40:12,035 | INFO     | executing command: lscpu
[2025-10-13 12:41:15] 2025-10-13 10:40:12,055 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 12:41:15] 2025-10-13 10:40:12,363 | INFO     | time since job start (4209s) is within the limit (172800.0s)
[2025-10-13 12:41:15] 2025-10-13 10:40:12,706 | INFO     | monitor loop #325: job 0:6840225853 is in state 'finished'
[2025-10-13 12:41:15] 2025-10-13 10:40:12,706 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 12:41:15] 2025-10-13 10:40:14,369 | INFO     | time since job start (4211s) is within the limit (172800.0s)
[2025-10-13 12:41:15] 2025-10-13 10:40:15,210 | INFO     | monitor loop #326: job 0:6840225853 is in state 'finished'
[2025-10-13 12:41:15] 2025-10-13 10:40:15,210 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 12:41:15] 2025-10-13 10:40:15,419 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 12:41:15] 2025-10-13 10:40:15,421 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3572.1422499999994
[2025-10-13 12:41:15] 2025-10-13 10:40:15,422 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6840225853/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 12:41:15] 2025-10-13 10:40:15,422 | INFO     | extracted standard info from prmon json
[2025-10-13 12:41:15] 2025-10-13 10:40:15,422 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 12:41:15] 2025-10-13 10:40:15,422 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 12:41:15] 2025-10-13 10:40:15,423 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 12:41:15] 2025-10-13 10:40:15,423 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 12:41:15] 2025-10-13 10:40:15,423 | INFO     | fitting pss+swap vs Time
[2025-10-13 12:41:15] 2025-10-13 10:40:15,423 | INFO     | sum of square deviations: 73882315.5
[2025-10-13 12:41:15] 2025-10-13 10:40:15,424 | INFO     | sum of deviations: -8638212287.5
[2025-10-13 12:41:15] 2025-10-13 10:40:15,424 | INFO     | mean x: 1760349991.5
[2025-10-13 12:41:15] 2025-10-13 10:40:15,424 | INFO     | mean y: 2551149.8870967743
[2025-10-13 12:41:15] 2025-10-13 10:40:15,424 | INFO     | -- intersect: 205820097933.13348
[2025-10-13 12:41:15] 2025-10-13 10:40:15,424 | INFO     | intersect: 205820097933.13348
[2025-10-13 12:41:15] 2025-10-13 10:40:15,424 | INFO     | chi2: 0.06334766721502355
[2025-10-13 12:41:15] 2025-10-13 10:40:15,424 | INFO     | -- intersect: 205820097933.13348
[2025-10-13 12:41:15] 2025-10-13 10:40:15,424 | INFO     | current memory leak: -116.92 B/s (using 62 data points, chi2=0.06)
[2025-10-13 12:41:15] 2025-10-13 10:40:15,424 | INFO     | could have reported an average CPU frequency of 3836 MHz (6 samples)
[2025-10-13 12:41:15] 2025-10-13 10:40:15,424 | INFO     | ..............................
[2025-10-13 12:41:15] 2025-10-13 10:40:15,424 | INFO     | . Timing measurements:
[2025-10-13 12:41:15] 2025-10-13 10:40:15,424 | INFO     | . get job = 0 s
[2025-10-13 12:41:15] 2025-10-13 10:40:15,424 | INFO     | . initial setup = 1 s
[2025-10-13 12:41:15] 2025-10-13 10:40:15,424 | INFO     | . payload setup = 4 s
[2025-10-13 12:41:15] 2025-10-13 10:40:15,424 | INFO     | . stage-in = 0 s
[2025-10-13 12:41:15] 2025-10-13 10:40:15,424 | INFO     | . payload execution = 4183 s
[2025-10-13 12:41:15] 2025-10-13 10:40:15,424 | INFO     | . stage-out = 0 s
[2025-10-13 12:41:15] 2025-10-13 10:40:15,424 | INFO     | . log creation = 0 s
[2025-10-13 12:41:15] 2025-10-13 10:40:15,424 | INFO     | ..............................
[2025-10-13 12:41:15] 2025-10-13 10:40:15,547 | INFO     | 
[2025-10-13 12:41:15] 2025-10-13 10:40:15,547 | INFO     | job summary report
[2025-10-13 12:41:15] 2025-10-13 10:40:15,547 | INFO     | --------------------------------------------------
[2025-10-13 12:41:15] 2025-10-13 10:40:15,547 | INFO     | PanDA job id: 6840225853
[2025-10-13 12:41:15] 2025-10-13 10:40:15,547 | INFO     | task id: 46676269
[2025-10-13 12:41:15] 2025-10-13 10:40:15,547 | INFO     | errors: (none)
[2025-10-13 12:41:15] 2025-10-13 10:40:15,547 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 12:41:15] 2025-10-13 10:40:15,547 | INFO     | pilot state: finished 
[2025-10-13 12:41:15] 2025-10-13 10:40:15,547 | INFO     | transexitcode: 0
[2025-10-13 12:41:15] 2025-10-13 10:40:15,547 | INFO     | exeerrorcode: 0
[2025-10-13 12:41:15] 2025-10-13 10:40:15,547 | INFO     | exeerrordiag: 
[2025-10-13 12:41:15] 2025-10-13 10:40:15,547 | INFO     | exitcode: 0
[2025-10-13 12:41:15] 2025-10-13 10:40:15,548 | INFO     | exitmsg: OK
[2025-10-13 12:41:15] 2025-10-13 10:40:15,548 | INFO     | cpuconsumptiontime: 15865 s
[2025-10-13 12:41:15] 2025-10-13 10:40:15,548 | INFO     | nevents: 400
[2025-10-13 12:41:15] 2025-10-13 10:40:15,548 | INFO     | neventsw: 0
[2025-10-13 12:41:15] 2025-10-13 10:40:15,548 | INFO     | pid: 568941
[2025-10-13 12:41:15] 2025-10-13 10:40:15,548 | INFO     | pgrp: 568941
[2025-10-13 12:41:15] 2025-10-13 10:40:15,548 | INFO     | corecount: 4
[2025-10-13 12:41:15] 2025-10-13 10:40:15,548 | INFO     | event service: False
[2025-10-13 12:41:15] 2025-10-13 10:40:15,548 | INFO     | sizes: {0: 2348860, 4: 2349122, 11: 2349150, 4191: 2384342, 4193: 2384342, 4197: 2384536}
[2025-10-13 12:41:15] 2025-10-13 10:40:15,548 | INFO     | --------------------------------------------------
[2025-10-13 12:41:15] 2025-10-13 10:40:15,548 | INFO     | 
[2025-10-13 12:41:15] 2025-10-13 10:40:15,548 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-13 12:41:15] 2025-10-13 10:40:15,567 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 12:41:15] 2025-10-13 10:40:15,567 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 12:41:15] 2025-10-13 10:40:15,567 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 12:41:15] 2025-10-13 10:40:15,567 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 12:41:15] 2025-10-13 10:40:15,567 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 12:41:15] 2025-10-13 10:40:15,567 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 12:41:15] 2025-10-13 10:40:15,567 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 12:41:15] 2025-10-13 10:40:15,567 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 12:41:15] 2025-10-13 10:40:15,567 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 12:41:15] 2025-10-13 10:40:15,567 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 12:41:15] 2025-10-13 10:40:15,567 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 12:41:15] 2025-10-13 10:40:15,567 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 12:41:15] 2025-10-13 10:40:15,567 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 12:41:15] 2025-10-13 10:40:15,567 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 12:41:15] 2025-10-13 10:40:15,567 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 12:41:15] 2025-10-13 10:40:15,567 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 12:41:15] 2025-10-13 10:40:15,567 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 12:41:15] 2025-10-13 10:40:15,568 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 12:41:15] 2025-10-13 10:40:15,568 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 12:41:15] 2025-10-13 10:40:15,568 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 12:41:15] 2025-10-13 10:40:15,568 | INFO     | job 6840225853 has completed (purged errors)
[2025-10-13 12:41:15] 2025-10-13 10:40:15,568 | INFO     | overall cleanup function is called
[2025-10-13 12:41:15] 2025-10-13 10:40:16,574 | INFO     | --- collectZombieJob: --- 10, [568941]
[2025-10-13 12:41:15] 2025-10-13 10:40:16,574 | INFO     | zombie collector waiting for pid 568941
[2025-10-13 12:41:15] 2025-10-13 10:40:16,574 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 12:41:15] 2025-10-13 10:40:16,574 | INFO     | collected zombie processes
[2025-10-13 12:41:15] 2025-10-13 10:40:16,574 | INFO     | will attempt to kill all subprocesses of pid=568941
[2025-10-13 12:41:15] 2025-10-13 10:40:16,622 | INFO     | process IDs to be killed: [568941] (in reverse order)
[2025-10-13 12:41:15] 2025-10-13 10:40:16,657 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 12:41:15] 2025-10-13 10:40:16,657 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 12:41:15] 2025-10-13 10:40:16,659 | INFO     | did not find any defunct processes belonging to 568941
[2025-10-13 12:41:15] 2025-10-13 10:40:16,660 | INFO     | did not find any defunct processes belonging to 568941
[2025-10-13 12:41:15] 2025-10-13 10:40:16,661 | INFO     | ready for new job
[2025-10-13 12:41:15] 2025-10-13 10:40:16,661 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 12:41:15] 2025-10-13 10:40:16,661 | INFO     | ***************************************
[2025-10-13 12:41:15] 2025-10-13 10:40:16,661 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 12:41:15] 2025-10-13 10:40:16,661 | INFO     | ***************************************
[2025-10-13 12:41:15] 2025-10-13 10:40:16,662 | INFO     | 
[2025-10-13 12:41:15] 2025-10-13 10:40:16,662 | INFO     | architecture information:
[2025-10-13 12:41:15] 2025-10-13 10:40:16,662 | INFO     | executing command: cat /etc/os-release
[2025-10-13 12:41:15] 2025-10-13 10:40:16,677 | INFO     | cat /etc/os-release:
[2025-10-13 12:41:15] NAME="CentOS Linux"
[2025-10-13 12:41:15] VERSION="7 (Core)"
[2025-10-13 12:41:15] ID="centos"
[2025-10-13 12:41:15] ID_LIKE="rhel fedora"
[2025-10-13 12:41:15] VERSION_ID="7"
[2025-10-13 12:41:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 12:41:15] ANSI_COLOR="0;31"
[2025-10-13 12:41:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 12:41:15] HOME_URL="https://www.centos.org/"
[2025-10-13 12:41:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 12:41:15] 
[2025-10-13 12:41:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 12:41:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 12:41:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 12:41:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 12:41:15] 
[2025-10-13 12:41:15] 2025-10-13 10:40:16,677 | INFO     | ***************************************
[2025-10-13 12:41:15] 2025-10-13 10:40:17,180 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 12:41:15] 2025-10-13 10:40:17,195 | INFO     | sufficient remaining disk space (231909359616 B)
[2025-10-13 12:41:15] 2025-10-13 10:40:17,195 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 12:41:15] 2025-10-13 10:40:17,195 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 12:41:15] 2025-10-13 10:40:17,195 | INFO     | update_server=False
[2025-10-13 12:41:15] 2025-10-13 10:40:17,195 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 12:41:15] 2025-10-13 10:40:17,195 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:41:15] 2025-10-13 10:40:17,195 | INFO     | aborting loop
[2025-10-13 12:41:15] 2025-10-13 10:40:17,196 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:41:15] 2025-10-13 10:40:17,400 | INFO     | all payload control threads have been joined
[2025-10-13 12:41:15] 2025-10-13 10:40:17,402 | INFO     | all data control threads have been joined
[2025-10-13 12:41:15] 2025-10-13 10:40:17,462 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 12:41:15] 2025-10-13 10:40:17,612 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 12:41:15] 2025-10-13 10:40:18,200 | INFO     | [job] retrieve thread has finished
[2025-10-13 12:41:15] 2025-10-13 10:40:18,201 | INFO     | [job] validate thread has finished
[2025-10-13 12:41:15] 2025-10-13 10:40:18,201 | INFO     | [job] queue monitor thread has finished
[2025-10-13 12:41:15] 2025-10-13 10:40:18,201 | INFO     | [job] job monitor thread has finished
[2025-10-13 12:41:15] 2025-10-13 10:40:18,249 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 12:41:15] 2025-10-13 10:40:18,405 | INFO     | [payload] control thread has finished
[2025-10-13 12:41:15] 2025-10-13 10:40:18,408 | INFO     | [data] control thread has finished
[2025-10-13 12:41:15] 2025-10-13 10:40:18,416 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 12:41:15] 2025-10-13 10:40:18,506 | INFO     | all job control threads have been joined
[2025-10-13 12:41:15] 2025-10-13 10:40:18,782 | INFO     | [payload] failed_post thread has finished
[2025-10-13 12:41:15] 2025-10-13 10:40:18,838 | INFO     | [data] copytool_in thread has finished
[2025-10-13 12:41:15] 2025-10-13 10:40:18,947 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 12:41:15] 2025-10-13 10:40:19,512 | INFO     | [job] control thread has finished
[2025-10-13 12:41:15] 2025-10-13 10:40:19,582 | INFO     | [payload] validate_post thread has finished
[2025-10-13 12:41:15] 2025-10-13 10:40:19,618 | INFO     | [data] copytool_out thread has finished
[2025-10-13 12:41:15] 2025-10-13 10:40:21,469 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 12:41:15] 2025-10-13 10:40:27,721 | INFO     | job.realtimelogging is not enabled
[2025-10-13 12:41:15] 2025-10-13 10:40:28,723 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 12:41:15] 2025-10-13 10:40:47,466 | INFO     | PID=562373 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 12:41:15] 2025-10-13 10:40:47,467 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 12:41:15] 2025-10-13 10:40:47,467 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 12:41:15] 2025-10-13 10:40:47,467 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 12:41:15] 2025-10-13 10:41:08,363 | INFO     | [monitor] cgroup control has ended
[2025-10-13 12:41:15] 2025-10-13 10:41:10,464 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139771379033920)>', '<ExcThread(monitor, started 139770432837376)>']
[2025-10-13 12:41:15] 2025-10-13 10:41:10,587 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 12:41:15] 2025-10-13 10:41:10,587 | INFO     | [monitor] control thread has ended
[2025-10-13 12:41:15] 2025-10-13 10:41:15,490 | INFO     | all workflow threads have been joined
[2025-10-13 12:41:15] 2025-10-13 10:41:15,490 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 12:41:15] 2025-10-13 10:41:15,491 | INFO     | traces error code: 0
[2025-10-13 12:41:15] 2025-10-13 10:41:15,491 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 12:41:15] 2025-10-13 10:41:15,572 [wrapper] ==== pilot stdout END ====
[2025-10-13 12:41:15] 2025-10-13 10:41:15,576 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 12:41:15] 2025-10-13 10:41:15,580 [wrapper] pilotpid: 562373
[2025-10-13 12:41:15] 2025-10-13 10:41:15,584 [wrapper] Pilot exit status: 0
[2025-10-13 12:41:15] 2025-10-13 10:41:15,597 [wrapper] pandaids: 6840225853
[2025-10-13 12:41:15] 2025-10-13 10:41:15,622 [wrapper] cleanup supervisor_pilot  579550 562374
[2025-10-13 12:41:15] 2025-10-13 10:41:15,625 [wrapper] Test setup, not cleaning
[2025-10-13 12:41:15] 2025-10-13 10:41:15,629 [wrapper] apfmon messages muted
[2025-10-13 12:41:15] 2025-10-13 10:41:15,633 [wrapper] ==== wrapper stdout END ====
[2025-10-13 12:41:15] 2025-10-13 10:41:15,637 [wrapper] ==== wrapper stderr END ====
[2025-10-13 12:41:15]  *** Error codes and diagnostics ***
[2025-10-13 12:41:15]     "exeErrorCode": 0,
[2025-10-13 12:41:15]     "exeErrorDiag": "",
[2025-10-13 12:41:15]     "pilotErrorCode": 0,
[2025-10-13 12:41:15]     "pilotErrorDiag": "",
[2025-10-13 12:41:15]  *** Listing of results directory ***
[2025-10-13 12:41:15] total 406064
[2025-10-13 12:41:15] -rw-r--r-- 1 boinc boinc    557409 Oct 12 17:00 pilot3.tar.gz
[2025-10-13 12:41:15] -rw-r--r-- 1 boinc boinc      5112 Oct 12 17:59 queuedata.json
[2025-10-13 12:41:15] -rwx------ 1 boinc boinc     36292 Oct 12 17:59 runpilot2-wrapper.sh
[2025-10-13 12:41:15] -rw-r--r-- 1 boinc boinc       100 Oct 13 11:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 12:41:15] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 11:29 run_atlas
[2025-10-13 12:41:15] -rw-r--r-- 1 boinc boinc       105 Oct 13 11:29 job.xml
[2025-10-13 12:41:15] -rw-r--r-- 2 boinc boinc 218693777 Oct 13 11:29 EVNT.46676267._004598.pool.root.1
[2025-10-13 12:41:15] -rw-r--r-- 2 boinc boinc    569682 Oct 13 11:29 input.tar.gz
[2025-10-13 12:41:15] -rw-r--r-- 2 boinc boinc     15120 Oct 13 11:29 start_atlas.sh
[2025-10-13 12:41:15] drwxrwx--x 2 boinc boinc      4096 Oct 13 11:29 shared
[2025-10-13 12:41:15] -rw-r--r-- 1 boinc boinc         0 Oct 13 11:29 boinc_setup_complete
[2025-10-13 12:41:15] -rw-r--r-- 1 boinc boinc      6379 Oct 13 11:29 init_data.xml
[2025-10-13 12:41:15] -rw-r--r-- 1 boinc boinc         0 Oct 13 11:29 boinc_lockfile
[2025-10-13 12:41:15] -rw-r--r-- 1 boinc boinc      2550 Oct 13 11:29 pandaJob.out
[2025-10-13 12:41:15] -rw------- 1 boinc boinc    972849 Oct 13 11:30 agis_schedconf.cvmfs.json
[2025-10-13 12:41:15] -rw------- 1 boinc boinc   1560580 Oct 13 11:30 agis_ddmendpoints.agis.ALL.json
[2025-10-13 12:41:15] drwx------ 5 boinc boinc      4096 Oct 13 11:30 pilot3
[2025-10-13 12:41:15] -rw------- 1 boinc boinc 191466874 Oct 13 12:39 HITS.46676269._082893.pool.root.1
[2025-10-13 12:41:15] -rw-r--r-- 1 boinc boinc       530 Oct 13 12:40 boinc_task_state.xml
[2025-10-13 12:41:15] -rw------- 1 boinc boinc      1019 Oct 13 12:40 memory_monitor_summary.json
[2025-10-13 12:41:15] -rw------- 1 boinc boinc    247809 Oct 13 12:40 log.46676269._082893.job.log.tgz.1
[2025-10-13 12:41:15] -rw------- 1 boinc boinc      7768 Oct 13 12:40 heartbeat.json
[2025-10-13 12:41:15] -rw------- 1 boinc boinc        95 Oct 13 12:40 pilot_heartbeat.json
[2025-10-13 12:41:15] -rw-r--r-- 1 boinc boinc        27 Oct 13 12:41 wrapper_checkpoint.txt
[2025-10-13 12:41:15] -rw-r--r-- 1 boinc boinc      8192 Oct 13 12:41 boinc_mmap_file
[2025-10-13 12:41:15] -rw------- 1 boinc boinc      4823 Oct 13 12:41 pilotlog.txt
[2025-10-13 12:41:15] -rw------- 1 boinc boinc    626123 Oct 13 12:41 log.46676269._082893.job.log.1
[2025-10-13 12:41:15] -rw------- 1 boinc boinc       357 Oct 13 12:41 output.list
[2025-10-13 12:41:15] -rw-r--r-- 1 boinc boinc       620 Oct 13 12:41 runtime_log
[2025-10-13 12:41:15] -rw------- 1 boinc boinc    890880 Oct 13 12:41 result.tar.gz
[2025-10-13 12:41:15] -rw------- 1 boinc boinc       659 Oct 13 12:41 treNDmMfDS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmkXkNDm5Jy7jm.diag
[2025-10-13 12:41:15] -rw-r--r-- 1 boinc boinc      8782 Oct 13 12:41 runtime_log.err
[2025-10-13 12:41:15] -rw-r--r-- 1 boinc boinc     21801 Oct 13 12:41 stderr.txt
[2025-10-13 12:41:15] HITS file was successfully produced:
[2025-10-13 12:41:15] -rw------- 1 boinc boinc 191466874 Oct 13 12:39 shared/HITS.pool.root.1
[2025-10-13 12:41:15]  *** Contents of shared directory: ***
[2025-10-13 12:41:15] total 402008
[2025-10-13 12:41:15] -rw-r--r-- 2 boinc boinc 218693777 Oct 13 11:29 ATLAS.root_0
[2025-10-13 12:41:15] -rw-r--r-- 2 boinc boinc    569682 Oct 13 11:29 input.tar.gz
[2025-10-13 12:41:15] -rw-r--r-- 2 boinc boinc     15120 Oct 13 11:29 start_atlas.sh
[2025-10-13 12:41:15] -rw------- 1 boinc boinc 191466874 Oct 13 12:39 HITS.pool.root.1
[2025-10-13 12:41:15] -rw------- 1 boinc boinc    890880 Oct 13 12:41 result.tar.gz
12:41:17 (558590): run_atlas exited; CPU time 15880.288191
12:41:17 (558590): called boinc_finish(0)

</stderr_txt>
]]>

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