Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:38:51 (3902901): wrapper (7.7.26015): starting
07:38:51 (3902901): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 07:38:51] Arguments: --nthreads 3
[2025-10-13 07:38:51] Threads: 3
[2025-10-13 07:38:51] Checking for CVMFS
[2025-10-13 07:38:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 07:38:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 07:38:51] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 07:38:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 07:38:51] 2.9.2.0 2254445 5450 87684 151650 0 56 30324290 36864001 0 130560 0 4333058 99.991 187811 784 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 07:38:51] CVMFS is ok
[2025-10-13 07:38:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 07:38:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 07:38:51] Further information can be found at the LHC@home message board.
[2025-10-13 07:38:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 07:38:51] Checking for apptainer binary...
[2025-10-13 07:38:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 07:38:51] Running /usr/bin/apptainer --version
[2025-10-13 07:38:51] apptainer version 1.4.1-1.1
[2025-10-13 07:38:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 07:38:51] atlasA230
[2025-10-13 07:38:51] apptainer works
[2025-10-13 07:38:51] Set ATHENA_PROC_NUMBER=3
[2025-10-13 07:38:51] Set ATHENA_CORE_NUMBER=3
[2025-10-13 07:38:51] Starting ATLAS job with PandaID=6840223768
[2025-10-13 07:38:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 09:02:13]  *** The last 200 lines of the pilot log: ***
[2025-10-13 09:02:13] 2025-10-13 07:01:42,346 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 09:02:13] 2025-10-13 07:01:42,346 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 09:02:13] 2025-10-13 07:01:42,346 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 09:02:13] 2025-10-13 07:01:42,346 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 09:02:13] 2025-10-13 07:01:42,346 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 09:02:13] 2025-10-13 07:01:42,346 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 09:02:13] 2025-10-13 07:01:42,346 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 09:02:13] 2025-10-13 07:01:42,346 | INFO     | job 6840223768 has completed (purged errors)
[2025-10-13 09:02:13] 2025-10-13 07:01:42,346 | INFO     | overall cleanup function is called
[2025-10-13 09:02:13] 2025-10-13 07:01:43,352 | INFO     | --- collectZombieJob: --- 10, [3913052]
[2025-10-13 09:02:13] 2025-10-13 07:01:43,353 | INFO     | zombie collector waiting for pid 3913052
[2025-10-13 09:02:13] 2025-10-13 07:01:43,353 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 09:02:13] 2025-10-13 07:01:43,353 | INFO     | collected zombie processes
[2025-10-13 09:02:13] 2025-10-13 07:01:43,353 | INFO     | will attempt to kill all subprocesses of pid=3913052
[2025-10-13 09:02:13] 2025-10-13 07:01:43,397 | INFO     | process IDs to be killed: [3913052] (in reverse order)
[2025-10-13 09:02:13] 2025-10-13 07:01:43,421 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 09:02:13] 2025-10-13 07:01:43,421 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 09:02:13] 2025-10-13 07:01:43,422 | INFO     | did not find any defunct processes belonging to 3913052
[2025-10-13 09:02:13] 2025-10-13 07:01:43,423 | INFO     | did not find any defunct processes belonging to 3913052
[2025-10-13 09:02:13] 2025-10-13 07:01:43,423 | INFO     | ready for new job
[2025-10-13 09:02:13] 2025-10-13 07:01:43,423 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 09:02:13] 2025-10-13 07:01:43,424 | INFO     | ***************************************
[2025-10-13 09:02:13] 2025-10-13 07:01:43,424 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 09:02:13] 2025-10-13 07:01:43,424 | INFO     | ***************************************
[2025-10-13 09:02:13] 2025-10-13 07:01:43,424 | INFO     | 
[2025-10-13 09:02:13] 2025-10-13 07:01:43,425 | INFO     | architecture information:
[2025-10-13 09:02:13] 2025-10-13 07:01:43,425 | INFO     | executing command: cat /etc/os-release
[2025-10-13 09:02:13] 2025-10-13 07:01:43,433 | INFO     | cat /etc/os-release:
[2025-10-13 09:02:13] NAME="CentOS Linux"
[2025-10-13 09:02:13] VERSION="7 (Core)"
[2025-10-13 09:02:13] ID="centos"
[2025-10-13 09:02:13] ID_LIKE="rhel fedora"
[2025-10-13 09:02:13] VERSION_ID="7"
[2025-10-13 09:02:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 09:02:13] ANSI_COLOR="0;31"
[2025-10-13 09:02:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 09:02:13] HOME_URL="https://www.centos.org/"
[2025-10-13 09:02:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 09:02:13] 
[2025-10-13 09:02:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 09:02:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 09:02:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 09:02:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 09:02:13] 
[2025-10-13 09:02:13] 2025-10-13 07:01:43,433 | INFO     | ***************************************
[2025-10-13 09:02:13] 2025-10-13 07:01:43,937 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 09:02:13] 2025-10-13 07:01:43,949 | INFO     | sufficient remaining disk space (329472016384 B)
[2025-10-13 09:02:13] 2025-10-13 07:01:43,950 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 09:02:13] 2025-10-13 07:01:43,950 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 09:02:13] 2025-10-13 07:01:43,950 | INFO     | update_server=False
[2025-10-13 09:02:13] 2025-10-13 07:01:43,950 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 09:02:13] 2025-10-13 07:01:43,950 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:02:13] 2025-10-13 07:01:44,433 | INFO     | all payload control threads have been joined
[2025-10-13 09:02:13] 2025-10-13 07:01:44,459 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:02:13] 2025-10-13 07:01:44,459 | INFO     | aborting loop
[2025-10-13 09:02:13] 2025-10-13 07:01:44,476 | INFO     | all data control threads have been joined
[2025-10-13 09:02:13] 2025-10-13 07:01:44,745 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 09:02:13] 2025-10-13 07:01:44,955 | INFO     | [job] queue monitor thread has finished
[2025-10-13 09:02:13] 2025-10-13 07:01:44,956 | INFO     | [job] retrieve thread has finished
[2025-10-13 09:02:13] 2025-10-13 07:01:45,265 | INFO     | [payload] validate_post thread has finished
[2025-10-13 09:02:13] 2025-10-13 07:01:45,290 | INFO     | all job control threads have been joined
[2025-10-13 09:02:13] 2025-10-13 07:01:45,439 | INFO     | [payload] control thread has finished
[2025-10-13 09:02:13] 2025-10-13 07:01:45,455 | INFO     | [data] copytool_in thread has finished
[2025-10-13 09:02:13] 2025-10-13 07:01:45,464 | INFO     | [job] job monitor thread has finished
[2025-10-13 09:02:13] 2025-10-13 07:01:45,482 | INFO     | [data] control thread has finished
[2025-10-13 09:02:13] 2025-10-13 07:01:45,964 | INFO     | [job] validate thread has finished
[2025-10-13 09:02:13] 2025-10-13 07:01:45,964 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 09:02:13] 2025-10-13 07:01:46,019 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 09:02:13] 2025-10-13 07:01:46,037 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 09:02:13] 2025-10-13 07:01:46,213 | INFO     | [payload] failed_post thread has finished
[2025-10-13 09:02:13] 2025-10-13 07:01:46,296 | INFO     | [job] control thread has finished
[2025-10-13 09:02:13] 2025-10-13 07:01:46,379 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 09:02:13] 2025-10-13 07:01:46,751 | INFO     | [data] copytool_out thread has finished
[2025-10-13 09:02:13] 2025-10-13 07:01:47,445 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 09:02:13] 2025-10-13 07:01:51,452 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 09:02:13] 2025-10-13 07:02:02,756 | INFO     | [monitor] cgroup control has ended
[2025-10-13 09:02:13] 2025-10-13 07:02:03,826 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140272292579136)>', '<ExcThread(monitor, started 140271786374912)>']
[2025-10-13 09:02:13] 2025-10-13 07:02:08,852 | INFO     | all workflow threads have been joined
[2025-10-13 09:02:13] 2025-10-13 07:02:08,852 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 09:02:13] 2025-10-13 07:02:08,853 | INFO     | traces error code: 0
[2025-10-13 09:02:13] 2025-10-13 07:02:08,853 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 09:02:13] 2025-10-13 07:02:13,772 | INFO     | PID=3906620 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 09:02:13] 2025-10-13 07:02:13,773 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 09:02:13] 2025-10-13 07:02:13,773 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 09:02:13] 2025-10-13 07:02:13,773 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 09:02:13] 2025-10-13 07:02:13,773 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 09:02:13] 2025-10-13 07:02:13,773 | INFO     | [monitor] control thread has ended
[2025-10-13 09:02:13] 2025-10-13 07:02:13,819 [wrapper] ==== pilot stdout END ====
[2025-10-13 09:02:13] 2025-10-13 07:02:13,821 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 09:02:13] 2025-10-13 07:02:13,823 [wrapper] pilotpid: 3906620
[2025-10-13 09:02:13] 2025-10-13 07:02:13,825 [wrapper] Pilot exit status: 0
[2025-10-13 09:02:13] 2025-10-13 07:02:13,832 [wrapper] pandaids: 6840223768
[2025-10-13 09:02:13] 2025-10-13 07:02:13,848 [wrapper] cleanup supervisor_pilot 3924988 3906621
[2025-10-13 09:02:13] 2025-10-13 07:02:13,851 [wrapper] Test setup, not cleaning
[2025-10-13 09:02:13] 2025-10-13 07:02:13,853 [wrapper] apfmon messages muted
[2025-10-13 09:02:13] 2025-10-13 07:02:13,855 [wrapper] ==== wrapper stdout END ====
[2025-10-13 09:02:13] 2025-10-13 07:02:13,857 [wrapper] ==== wrapper stderr END ====
[2025-10-13 09:02:13]  *** Error codes and diagnostics ***
[2025-10-13 09:02:13]     "exeErrorCode": 0,
[2025-10-13 09:02:13]     "exeErrorDiag": "",
[2025-10-13 09:02:13]     "pilotErrorCode": 0,
[2025-10-13 09:02:13]     "pilotErrorDiag": "",
[2025-10-13 09:02:13]  *** Listing of results directory ***
[2025-10-13 09:02:13] total 413776
[2025-10-13 09:02:13] -rw-r--r-- 1 boinc boinc    557409 Oct 12 17:00 pilot3.tar.gz
[2025-10-13 09:02:13] -rw-r--r-- 1 boinc boinc      5112 Oct 12 17:11 queuedata.json
[2025-10-13 09:02:13] -rwx------ 1 boinc boinc     36292 Oct 12 17:12 runpilot2-wrapper.sh
[2025-10-13 09:02:13] -rw-r--r-- 1 boinc boinc       100 Oct 13 07:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 09:02:13] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 07:38 run_atlas
[2025-10-13 09:02:13] -rw-r--r-- 1 boinc boinc       105 Oct 13 07:38 job.xml
[2025-10-13 09:02:13] -rw-r--r-- 2 boinc boinc 219370603 Oct 13 07:38 EVNT.46676267._004557.pool.root.1
[2025-10-13 09:02:13] drwxrwx--x 2 boinc boinc      4096 Oct 13 07:38 shared
[2025-10-13 09:02:13] -rw-r--r-- 2 boinc boinc    569682 Oct 13 07:38 input.tar.gz
[2025-10-13 09:02:13] -rw-r--r-- 2 boinc boinc     15120 Oct 13 07:38 start_atlas.sh
[2025-10-13 09:02:13] -rw-r--r-- 1 boinc boinc         0 Oct 13 07:38 boinc_setup_complete
[2025-10-13 09:02:13] -rw-r--r-- 1 boinc boinc      6442 Oct 13 07:38 init_data.xml
[2025-10-13 09:02:13] -rw-r--r-- 1 boinc boinc         0 Oct 13 07:38 boinc_lockfile
[2025-10-13 09:02:13] -rw-r--r-- 1 boinc boinc      2550 Oct 13 07:38 pandaJob.out
[2025-10-13 09:02:13] -rw------- 1 boinc boinc    973230 Oct 13 07:38 agis_schedconf.cvmfs.json
[2025-10-13 09:02:13] -rw------- 1 boinc boinc   1560580 Oct 13 07:38 agis_ddmendpoints.agis.ALL.json
[2025-10-13 09:02:13] drwx------ 5 boinc boinc      4096 Oct 13 07:38 pilot3
[2025-10-13 09:02:13] -rw------- 1 boinc boinc 198500145 Oct 13 09:01 HITS.46676269._081872.pool.root.1
[2025-10-13 09:02:13] -rw-r--r-- 1 boinc boinc       529 Oct 13 09:01 boinc_task_state.xml
[2025-10-13 09:02:13] -rw------- 1 boinc boinc        95 Oct 13 09:01 pilot_heartbeat.json
[2025-10-13 09:02:13] -rw------- 1 boinc boinc      1020 Oct 13 09:01 memory_monitor_summary.json
[2025-10-13 09:02:13] -rw------- 1 boinc boinc    246747 Oct 13 09:01 log.46676269._081872.job.log.tgz.1
[2025-10-13 09:02:13] -rw------- 1 boinc boinc      7771 Oct 13 09:01 heartbeat.json
[2025-10-13 09:02:13] -rw-r--r-- 1 boinc boinc      8192 Oct 13 09:02 boinc_mmap_file
[2025-10-13 09:02:13] -rw-r--r-- 1 boinc boinc        27 Oct 13 09:02 wrapper_checkpoint.txt
[2025-10-13 09:02:13] -rw------- 1 boinc boinc       747 Oct 13 09:02 pilotlog.txt
[2025-10-13 09:02:13] -rw------- 1 boinc boinc    728398 Oct 13 09:02 log.46676269._081872.job.log.1
[2025-10-13 09:02:13] -rw------- 1 boinc boinc       357 Oct 13 09:02 output.list
[2025-10-13 09:02:13] -rw-r--r-- 1 boinc boinc       620 Oct 13 09:02 runtime_log
[2025-10-13 09:02:13] -rw------- 1 boinc boinc    993280 Oct 13 09:02 result.tar.gz
[2025-10-13 09:02:13] -rw-r--r-- 1 boinc boinc      8792 Oct 13 09:02 runtime_log.err
[2025-10-13 09:02:13] -rw------- 1 boinc boinc       661 Oct 13 09:02 Pd6MDmPvCS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmmDUMDm0SLd2m.diag
[2025-10-13 09:02:13] -rw-r--r-- 1 boinc boinc     11523 Oct 13 09:02 stderr.txt
[2025-10-13 09:02:13] HITS file was successfully produced:
[2025-10-13 09:02:13] -rw------- 1 boinc boinc 198500145 Oct 13 09:01 shared/HITS.pool.root.1
[2025-10-13 09:02:13]  *** Contents of shared directory: ***
[2025-10-13 09:02:13] total 409636
[2025-10-13 09:02:13] -rw-r--r-- 2 boinc boinc 219370603 Oct 13 07:38 ATLAS.root_0
[2025-10-13 09:02:13] -rw-r--r-- 2 boinc boinc    569682 Oct 13 07:38 input.tar.gz
[2025-10-13 09:02:13] -rw-r--r-- 2 boinc boinc     15120 Oct 13 07:38 start_atlas.sh
[2025-10-13 09:02:13] -rw------- 1 boinc boinc 198500145 Oct 13 09:01 HITS.pool.root.1
[2025-10-13 09:02:13] -rw------- 1 boinc boinc    993280 Oct 13 09:02 result.tar.gz
09:02:15 (3902901): run_atlas exited; CPU time 14239.433867
09:02:15 (3902901): called boinc_finish(0)

</stderr_txt>
]]>

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