Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:31:48 (27673): wrapper (7.7.26015): starting
15:31:48 (27673): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 15:31:48] Arguments: --nthreads 12
[2025-10-12 15:31:48] Threads: 12
[2025-10-12 15:31:48] Checking for CVMFS
[2025-10-12 15:31:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 15:31:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 15:31:48] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 15:31:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 15:31:48] 2.11.2.0 2987 223259 97500 151633 0 57 14872221 20275201 1 130560 1 108932767 99.984 13406648 12239 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 15:31:48] CVMFS is ok
[2025-10-12 15:31:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 15:31:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 15:31:48] Further information can be found at the LHC@home message board.
[2025-10-12 15:31:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 15:31:48] Checking for apptainer binary...
[2025-10-12 15:31:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 15:31:48] Running /usr/bin/apptainer --version
[2025-10-12 15:31:48] apptainer version 1.3.2-1.el7
[2025-10-12 15:31:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 15:31:49] c-205-19.aglt2.org
[2025-10-12 15:31:49] apptainer works
[2025-10-12 15:31:49] Set ATHENA_PROC_NUMBER=12
[2025-10-12 15:31:49] Set ATHENA_CORE_NUMBER=12
[2025-10-12 15:31:49] Starting ATLAS job with PandaID=6839987955
[2025-10-12 15:31:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 16:47:21]  *** The last 200 lines of the pilot log: ***
[2025-10-12 16:47:21]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839987955/log.46676269._078299.job.log.tgz.1
[2025-10-12 16:47:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/03/f1/log.46676269._078299.job.log.tgz.1
[2025-10-12 16:47:21]  workdir=None
[2025-10-12 16:47:21] ]
[2025-10-12 16:47:21] 2025-10-12 20:46:39,037 | INFO     | transferring file log.46676269._078299.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839987955/log.46676269._078299.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 16:47:21] 2025-10-12 20:46:39,037 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839987955/log.46676269._078299.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._078299.job
[2025-10-12 16:47:21] 2025-10-12 20:46:39,059 | INFO     | adding to output.list: log.46676269._078299.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/03/f1/log.46676269._078299.job.log.tg
[2025-10-12 16:47:21] 2025-10-12 20:46:39,060 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 16:47:21] 2025-10-12 20:46:39,060 | INFO     | summary of transferred files:
[2025-10-12 16:47:21] 2025-10-12 20:46:39,060 | INFO     |  -- lfn=log.46676269._078299.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 16:47:21] 2025-10-12 20:46:39,061 | INFO     | stage-out finished correctly
[2025-10-12 16:47:21] 2025-10-12 20:46:40,038 | INFO     | time since job start (4475s) is within the limit (172800.0s)
[2025-10-12 16:47:21] 2025-10-12 20:46:40,635 | INFO     | monitor loop #334: job 0:6839987955 is in state 'finished'
[2025-10-12 16:47:21] 2025-10-12 20:46:40,635 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:47:21] 2025-10-12 20:46:41,014 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 16:47:21] 2025-10-12 20:46:42,048 | INFO     | time since job start (4477s) is within the limit (172800.0s)
[2025-10-12 16:47:21] 2025-10-12 20:46:43,147 | INFO     | monitor loop #335: job 0:6839987955 is in state 'finished'
[2025-10-12 16:47:21] 2025-10-12 20:46:43,148 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:47:21] 2025-10-12 20:46:43,760 | INFO     | job 6839987955 has state=finished
[2025-10-12 16:47:21] 2025-10-12 20:46:43,761 | INFO     | preparing for final server update for job 6839987955 in state='finished'
[2025-10-12 16:47:21] 2025-10-12 20:46:43,761 | INFO     | this job has now completed (state=finished)
[2025-10-12 16:47:21] 2025-10-12 20:46:43,761 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 16:47:21] 2025-10-12 20:46:43,762 | INFO     | log transfer has been attempted: DONE
[2025-10-12 16:47:21] 2025-10-12 20:46:43,762 | INFO     | job 6839987955 has finished - writing final server update
[2025-10-12 16:47:21] 2025-10-12 20:46:43,762 | INFO     | total number of processed events: 400 (read)
[2025-10-12 16:47:21] 2025-10-12 20:46:43,763 | INFO     | executing command: lscpu
[2025-10-12 16:47:21] 2025-10-12 20:46:43,790 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 16:47:21] 2025-10-12 20:46:44,054 | INFO     | time since job start (4479s) is within the limit (172800.0s)
[2025-10-12 16:47:21] 2025-10-12 20:46:45,651 | INFO     | monitor loop #336: job 0:6839987955 is in state 'finished'
[2025-10-12 16:47:21] 2025-10-12 20:46:45,662 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:47:21] 2025-10-12 20:46:46,059 | INFO     | time since job start (4481s) is within the limit (172800.0s)
[2025-10-12 16:47:21] 2025-10-12 20:46:47,177 | INFO     | PID=31402 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 16:47:21] 2025-10-12 20:46:48,164 | INFO     | monitor loop #337: job 0:6839987955 is in state 'finished'
[2025-10-12 16:47:21] 2025-10-12 20:46:48,164 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:47:21] 2025-10-12 20:46:48,178 | INFO     | time since job start (4483s) is within the limit (172800.0s)
[2025-10-12 16:47:21] 2025-10-12 20:46:48,770 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 16:47:21] 2025-10-12 20:46:48,774 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1751.25
[2025-10-12 16:47:21] 2025-10-12 20:46:48,776 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839987955/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 16:47:21] 2025-10-12 20:46:48,778 | INFO     | extracted standard info from prmon json
[2025-10-12 16:47:21] 2025-10-12 20:46:48,778 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 16:47:21] 2025-10-12 20:46:48,778 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 16:47:21] 2025-10-12 20:46:48,778 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 16:47:21] 2025-10-12 20:46:48,779 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 16:47:21] 2025-10-12 20:46:48,780 | INFO     | fitting pss+swap vs Time
[2025-10-12 16:47:21] 2025-10-12 20:46:48,780 | INFO     | sum of square deviations: 89127252.5
[2025-10-12 16:47:21] 2025-10-12 20:46:48,781 | INFO     | sum of deviations: -6006715323.000001
[2025-10-12 16:47:21] 2025-10-12 20:46:48,781 | INFO     | mean x: 1760299841.5
[2025-10-12 16:47:21] 2025-10-12 20:46:48,781 | INFO     | mean y: 2828295.4545454546
[2025-10-12 16:47:21] 2025-10-12 20:46:48,781 | INFO     | -- intersect: 118637922886.89304
[2025-10-12 16:47:21] 2025-10-12 20:46:48,781 | INFO     | intersect: 118637922886.89304
[2025-10-12 16:47:21] 2025-10-12 20:46:48,781 | INFO     | chi2: 0.1324426063818679
[2025-10-12 16:47:21] 2025-10-12 20:46:48,781 | INFO     | -- intersect: 118637922886.89304
[2025-10-12 16:47:21] 2025-10-12 20:46:48,782 | INFO     | current memory leak: -67.39 B/s (using 66 data points, chi2=0.13)
[2025-10-12 16:47:21] 2025-10-12 20:46:48,782 | INFO     | could have reported an average CPU frequency of 2045 MHz (6 samples)
[2025-10-12 16:47:21] 2025-10-12 20:46:48,782 | INFO     | ..............................
[2025-10-12 16:47:21] 2025-10-12 20:46:48,782 | INFO     | . Timing measurements:
[2025-10-12 16:47:21] 2025-10-12 20:46:48,782 | INFO     | . get job = 0 s
[2025-10-12 16:47:21] 2025-10-12 20:46:48,782 | INFO     | . initial setup = 2 s
[2025-10-12 16:47:21] 2025-10-12 20:46:48,782 | INFO     | . payload setup = 7 s
[2025-10-12 16:47:21] 2025-10-12 20:46:48,782 | INFO     | . stage-in = 0 s
[2025-10-12 16:47:21] 2025-10-12 20:46:48,783 | INFO     | . payload execution = 4445 s
[2025-10-12 16:47:21] 2025-10-12 20:46:48,783 | INFO     | . stage-out = 0 s
[2025-10-12 16:47:21] 2025-10-12 20:46:48,783 | INFO     | . log creation = 0 s
[2025-10-12 16:47:21] 2025-10-12 20:46:48,783 | INFO     | ..............................
[2025-10-12 16:47:21] 2025-10-12 20:46:49,097 | INFO     | 
[2025-10-12 16:47:21] 2025-10-12 20:46:49,097 | INFO     | job summary report
[2025-10-12 16:47:21] 2025-10-12 20:46:49,098 | INFO     | --------------------------------------------------
[2025-10-12 16:47:21] 2025-10-12 20:46:49,098 | INFO     | PanDA job id: 6839987955
[2025-10-12 16:47:21] 2025-10-12 20:46:49,098 | INFO     | task id: 46676269
[2025-10-12 16:47:21] 2025-10-12 20:46:49,098 | INFO     | errors: (none)
[2025-10-12 16:47:21] 2025-10-12 20:46:49,098 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 16:47:21] 2025-10-12 20:46:49,098 | INFO     | pilot state: finished 
[2025-10-12 16:47:21] 2025-10-12 20:46:49,099 | INFO     | transexitcode: 0
[2025-10-12 16:47:21] 2025-10-12 20:46:49,099 | INFO     | exeerrorcode: 0
[2025-10-12 16:47:21] 2025-10-12 20:46:49,099 | INFO     | exeerrordiag: 
[2025-10-12 16:47:21] 2025-10-12 20:46:49,099 | INFO     | exitcode: 0
[2025-10-12 16:47:21] 2025-10-12 20:46:49,099 | INFO     | exitmsg: OK
[2025-10-12 16:47:21] 2025-10-12 20:46:49,100 | INFO     | cpuconsumptiontime: 47429 s
[2025-10-12 16:47:21] 2025-10-12 20:46:49,100 | INFO     | nevents: 400
[2025-10-12 16:47:21] 2025-10-12 20:46:49,100 | INFO     | neventsw: 0
[2025-10-12 16:47:21] 2025-10-12 20:46:49,100 | INFO     | pid: 5475
[2025-10-12 16:47:21] 2025-10-12 20:46:49,100 | INFO     | pgrp: 5475
[2025-10-12 16:47:21] 2025-10-12 20:46:49,100 | INFO     | corecount: 12
[2025-10-12 16:47:21] 2025-10-12 20:46:49,101 | INFO     | event service: False
[2025-10-12 16:47:21] 2025-10-12 20:46:49,101 | INFO     | sizes: {0: 2348686, 1: 2348885, 6: 2349147, 12: 2349175, 4456: 2375251, 4458: 2384249, 4460: 2384433, 4468: 2384627}
[2025-10-12 16:47:21] 2025-10-12 20:46:49,101 | INFO     | --------------------------------------------------
[2025-10-12 16:47:21] 2025-10-12 20:46:49,101 | INFO     | 
[2025-10-12 16:47:21] 2025-10-12 20:46:49,101 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 16:47:21] 2025-10-12 20:46:49,186 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 16:47:21] 2025-10-12 20:46:49,186 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 16:47:21] 2025-10-12 20:46:49,186 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 16:47:21] 2025-10-12 20:46:49,186 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 16:47:21] 2025-10-12 20:46:49,186 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 16:47:21] 2025-10-12 20:46:49,187 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 16:47:21] 2025-10-12 20:46:49,187 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 16:47:21] 2025-10-12 20:46:49,187 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 16:47:21] 2025-10-12 20:46:49,187 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 16:47:21] 2025-10-12 20:46:49,187 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 16:47:21] 2025-10-12 20:46:49,187 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 16:47:21] 2025-10-12 20:46:49,188 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 16:47:21] 2025-10-12 20:46:49,188 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 16:47:21] 2025-10-12 20:46:49,188 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 16:47:21] 2025-10-12 20:46:49,188 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 16:47:21] 2025-10-12 20:46:49,188 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 16:47:21] 2025-10-12 20:46:49,188 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 16:47:21] 2025-10-12 20:46:49,189 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 16:47:21] 2025-10-12 20:46:49,189 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 16:47:21] 2025-10-12 20:46:49,189 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 16:47:21] 2025-10-12 20:46:49,189 | INFO     | job 6839987955 has completed (purged errors)
[2025-10-12 16:47:21] 2025-10-12 20:46:49,189 | INFO     | overall cleanup function is called
[2025-10-12 16:47:21] 2025-10-12 20:46:50,198 | INFO     | --- collectZombieJob: --- 10, [5475]
[2025-10-12 16:47:21] 2025-10-12 20:46:50,198 | INFO     | zombie collector waiting for pid 5475
[2025-10-12 16:47:21] 2025-10-12 20:46:50,198 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 16:47:21] 2025-10-12 20:46:50,198 | INFO     | collected zombie processes
[2025-10-12 16:47:21] 2025-10-12 20:46:50,198 | INFO     | will attempt to kill all subprocesses of pid=5475
[2025-10-12 16:47:21] 2025-10-12 20:46:50,291 | INFO     | process IDs to be killed: [5475] (in reverse order)
[2025-10-12 16:47:21] 2025-10-12 20:46:50,343 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 16:47:21] 2025-10-12 20:46:50,343 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 16:47:21] 2025-10-12 20:46:50,347 | INFO     | did not find any defunct processes belonging to 5475
[2025-10-12 16:47:21] 2025-10-12 20:46:50,350 | INFO     | did not find any defunct processes belonging to 5475
[2025-10-12 16:47:21] 2025-10-12 20:46:50,350 | INFO     | ready for new job
[2025-10-12 16:47:21] 2025-10-12 20:46:50,350 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 16:47:21] 2025-10-12 20:46:50,351 | INFO     | ***************************************
[2025-10-12 16:47:21] 2025-10-12 20:46:50,352 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 16:47:21] 2025-10-12 20:46:50,352 | INFO     | ***************************************
[2025-10-12 16:47:21] 2025-10-12 20:46:50,352 | INFO     | 
[2025-10-12 16:47:21] 2025-10-12 20:46:50,352 | INFO     | architecture information:
[2025-10-12 16:47:21] 2025-10-12 20:46:50,353 | INFO     | executing command: cat /etc/os-release
[2025-10-12 16:47:21] 2025-10-12 20:46:50,368 | INFO     | cat /etc/os-release:
[2025-10-12 16:47:21] NAME="CentOS Linux"
[2025-10-12 16:47:21] VERSION="7 (Core)"
[2025-10-12 16:47:21] ID="centos"
[2025-10-12 16:47:21] ID_LIKE="rhel fedora"
[2025-10-12 16:47:21] VERSION_ID="7"
[2025-10-12 16:47:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 16:47:21] ANSI_COLOR="0;31"
[2025-10-12 16:47:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 16:47:21] HOME_URL="https://www.centos.org/"
[2025-10-12 16:47:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 16:47:21] 
[2025-10-12 16:47:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 16:47:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 16:47:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 16:47:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 16:47:21] 
[2025-10-12 16:47:21] 2025-10-12 20:46:50,368 | INFO     | ***************************************
[2025-10-12 16:47:21] 2025-10-12 20:46:50,871 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 16:47:21] 2025-10-12 20:46:50,888 | INFO     | sufficient remaining disk space (29361176576 B)
[2025-10-12 16:47:21] 2025-10-12 20:46:50,888 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 16:47:21] 2025-10-12 20:46:50,888 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 16:47:21] 2025-10-12 20:46:50,888 | INFO     | update_server=False
[2025-10-12 16:47:21] 2025-10-12 20:46:50,889 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 16:47:21] 2025-10-12 20:46:50,903 | INFO     | all payload control threads have been joined
[2025-10-12 16:47:21] 2025-10-12 20:46:51,013 | INFO     | all data control threads have been joined
[2025-10-12 16:47:21] 2025-10-12 20:46:51,602 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 16:47:21] 2025-10-12 20:46:51,672 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:47:21] 2025-10-12 20:46:51,673 | INFO     | aborting loop
[2025-10-12 16:47:21] 2025-10-12 20:46:51,894 | INFO     | [job] retrieve thread has finished
[2025-10-12 16:47:21] 2025-10-12 20:46:51,896 | INFO     | [job] validate thread has finished
[2025-10-12 16:47:21] 2025-10-12 20:46:51,908 | INFO     | [payload] control thread has finished
[2025-10-12 16:47:21] 2025-10-12 20:46:52,015 | INFO     | [data] control thread has finished
[2025-10-12 16:47:21] 2025-10-12 20:46:52,055 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 16:47:21] 2025-10-12 20:46:52,150 | INFO     | all job control threads have been joined
[2025-10-12 16:47:21] 2025-10-12 20:46:52,163 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 16:47:21] 2025-10-12 20:46:52,320 | INFO     | [payload] validate_post thread has finished
[2025-10-12 16:47:21] 2025-10-12 20:46:52,378 | INFO     | [data] copytool_in thread has finished
[2025-10-12 16:47:21] 2025-10-12 20:46:52,621 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 16:47:21] 2025-10-12 20:46:52,678 | INFO     | [job] job monitor thread has finished
[2025-10-12 16:47:21] 2025-10-12 20:46:53,154 | INFO     | [job] control thread has finished
[2025-10-12 16:47:21] 2025-10-12 20:46:53,315 | INFO     | [payload] failed_post thread has finished
[2025-10-12 16:47:21] 2025-10-12 20:46:53,397 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 16:47:21] 2025-10-12 20:46:53,875 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:47:21] 2025-10-12 20:46:54,168 | INFO     | [data] copytool_out thread has finished
[2025-10-12 16:47:21] 2025-10-12 20:46:54,881 | INFO     | [job] queue monitor thread has finished
[2025-10-12 16:47:21] 2025-10-12 20:46:55,608 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 16:47:21] 2025-10-12 20:47:01,818 | INFO     | job.realtimelogging is not enabled
[2025-10-12 16:47:21] 2025-10-12 20:47:02,473 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-10-12 16:47:21] 2025-10-12 20:47:02,823 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 16:47:21] 2025-10-12 20:47:11,443 | INFO     | [monitor] cgroup control has ended
[2025-10-12 16:47:21] 2025-10-12 20:47:12,093 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140651068155712)>', '<ExcThread(monitor, started 140650095826688)>']
[2025-10-12 16:47:21] 2025-10-12 20:47:17,099 | INFO     | all workflow threads have been joined
[2025-10-12 16:47:21] 2025-10-12 20:47:17,099 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 16:47:21] 2025-10-12 20:47:17,105 | INFO     | traces error code: 0
[2025-10-12 16:47:21] 2025-10-12 20:47:17,105 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 16:47:21] 2025-10-12 20:47:21,384 | INFO     | PID=31402 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 16:47:21] 2025-10-12 20:47:21,385 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 16:47:21] 2025-10-12 20:47:21,385 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 16:47:21] 2025-10-12 20:47:21,385 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 16:47:21] 2025-10-12 20:47:21,385 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 16:47:21] 2025-10-12 20:47:21,385 | INFO     | [monitor] control thread has ended
[2025-10-12 16:47:21] 2025-10-12 20:47:21,464 [wrapper] ==== pilot stdout END ====
[2025-10-12 16:47:21] 2025-10-12 20:47:21,467 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 16:47:21] 2025-10-12 20:47:21,471 [wrapper] pilotpid: 31402
[2025-10-12 16:47:21] 2025-10-12 20:47:21,475 [wrapper] Pilot exit status: 0
[2025-10-12 16:47:21] 2025-10-12 20:47:21,490 [wrapper] pandaids: 6839987955
[2025-10-12 16:47:21] 2025-10-12 20:47:21,530 [wrapper] cleanup supervisor_pilot 23617 31403
[2025-10-12 16:47:21] 2025-10-12 20:47:21,534 [wrapper] Test setup, not cleaning
[2025-10-12 16:47:21] 2025-10-12 20:47:21,538 [wrapper] apfmon messages muted
[2025-10-12 16:47:21] 2025-10-12 20:47:21,542 [wrapper] ==== wrapper stdout END ====
[2025-10-12 16:47:21] 2025-10-12 20:47:21,546 [wrapper] ==== wrapper stderr END ====
[2025-10-12 16:47:21]  *** Error codes and diagnostics ***
[2025-10-12 16:47:21]     "exeErrorCode": 0,
[2025-10-12 16:47:21]     "exeErrorDiag": "",
[2025-10-12 16:47:21]     "pilotErrorCode": 0,
[2025-10-12 16:47:21]     "pilotErrorDiag": "",
[2025-10-12 16:47:21]  *** Listing of results directory ***
[2025-10-12 16:47:21] total 416228
[2025-10-12 16:47:21] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 08:35 pilot3.tar.gz
[2025-10-12 16:47:21] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 08:38 queuedata.json
[2025-10-12 16:47:21] -rwx------ 1 boincer umatlas     36292 Oct 12 08:39 runpilot2-wrapper.sh
[2025-10-12 16:47:21] -rw-r--r-- 1 boincer umatlas       100 Oct 12 15:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 16:47:21] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 15:31 run_atlas
[2025-10-12 16:47:21] -rw-r--r-- 1 boincer umatlas       105 Oct 12 15:31 job.xml
[2025-10-12 16:47:21] -rw-r--r-- 2 boincer umatlas 220390048 Oct 12 15:31 EVNT.46676267._003794.pool.root.1
[2025-10-12 16:47:21] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 15:31 start_atlas.sh
[2025-10-12 16:47:21] drwxrwx--x 2 boincer umatlas      4096 Oct 12 15:31 shared
[2025-10-12 16:47:21] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 15:31 input.tar.gz
[2025-10-12 16:47:21] -rw-r--r-- 1 boincer umatlas         0 Oct 12 15:31 boinc_lockfile
[2025-10-12 16:47:21] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 15:31 pandaJob.out
[2025-10-12 16:47:21] -rw------- 1 boincer umatlas    975528 Oct 12 15:32 agis_schedconf.cvmfs.json
[2025-10-12 16:47:21] -rw------- 1 boincer umatlas   1560580 Oct 12 15:32 agis_ddmendpoints.agis.ALL.json
[2025-10-12 16:47:21] drwx------ 5 boincer umatlas      4096 Oct 12 15:32 pilot3
[2025-10-12 16:47:21] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 16:36 init_data.xml
[2025-10-12 16:47:21] -rw------- 1 boincer umatlas 199842581 Oct 12 16:46 HITS.46676269._078299.pool.root.1
[2025-10-12 16:47:21] -rw-r--r-- 1 boincer umatlas       529 Oct 12 16:46 boinc_task_state.xml
[2025-10-12 16:47:21] -rw------- 1 boincer umatlas      1050 Oct 12 16:46 memory_monitor_summary.json
[2025-10-12 16:47:21] -rw------- 1 boincer umatlas    392920 Oct 12 16:46 log.46676269._078299.job.log.tgz.1
[2025-10-12 16:47:21] -rw------- 1 boincer umatlas      7854 Oct 12 16:46 heartbeat.json
[2025-10-12 16:47:21] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 16:46 boinc_mmap_file
[2025-10-12 16:47:21] -rw-r--r-- 1 boincer umatlas        27 Oct 12 16:46 wrapper_checkpoint.txt
[2025-10-12 16:47:21] -rw------- 1 boincer umatlas        95 Oct 12 16:47 pilot_heartbeat.json
[2025-10-12 16:47:21] -rw------- 1 boincer umatlas       745 Oct 12 16:47 pilotlog.txt
[2025-10-12 16:47:21] -rw------- 1 boincer umatlas    650274 Oct 12 16:47 log.46676269._078299.job.log.1
[2025-10-12 16:47:21] -rw------- 1 boincer umatlas       357 Oct 12 16:47 output.list
[2025-10-12 16:47:21] -rw-r--r-- 1 boincer umatlas       620 Oct 12 16:47 runtime_log
[2025-10-12 16:47:21] -rw------- 1 boincer umatlas   1064960 Oct 12 16:47 result.tar.gz
[2025-10-12 16:47:21] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 16:47 runtime_log.err
[2025-10-12 16:47:21] -rw------- 1 boincer umatlas       659 Oct 12 16:47 a7aNDm7WAS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmEojNDmwm9jVm.diag
[2025-10-12 16:47:21] -rw-r--r-- 1 boincer umatlas     22325 Oct 12 16:47 stderr.txt
[2025-10-12 16:47:21] HITS file was successfully produced:
[2025-10-12 16:47:21] -rw------- 1 boincer umatlas 199842581 Oct 12 16:46 shared/HITS.pool.root.1
[2025-10-12 16:47:21]  *** Contents of shared directory: ***
[2025-10-12 16:47:21] total 412008
[2025-10-12 16:47:21] -rw-r--r-- 2 boincer umatlas 220390048 Oct 12 15:31 ATLAS.root_0
[2025-10-12 16:47:21] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 15:31 start_atlas.sh
[2025-10-12 16:47:21] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 15:31 input.tar.gz
[2025-10-12 16:47:21] -rw------- 1 boincer umatlas 199842581 Oct 12 16:46 HITS.pool.root.1
[2025-10-12 16:47:21] -rw------- 1 boincer umatlas   1064960 Oct 12 16:47 result.tar.gz
16:47:23 (27673): run_atlas exited; CPU time 47411.544106
16:47:23 (27673): called boinc_finish(0)

</stderr_txt>
]]>

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