Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
17:28:53 (462814): wrapper (7.7.26015): starting
17:28:53 (462814): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 17:28:53] Arguments: --nthreads 4
[2025-10-13 17:28:53] Threads: 4
[2025-10-13 17:28:53] Checking for CVMFS
[2025-10-13 17:28:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 17:28:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 17:28:53] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 17:28:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 17:28:53] 2.12.7.0 3347374 7698 65204 151666 3 57 3666195 6144000 0 130560 3 15678276 99.996 266530 373 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.42:3128 1
[2025-10-13 17:28:53] CVMFS is ok
[2025-10-13 17:28:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 17:28:53] Checking for apptainer binary...
[2025-10-13 17:28:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 17:28:53] Running /usr/bin/apptainer --version
[2025-10-13 17:28:53] apptainer version 1.4.2
[2025-10-13 17:28:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 17:28:53] Ryzen8
[2025-10-13 17:28:53] apptainer works
[2025-10-13 17:28:53] Set ATHENA_PROC_NUMBER=4
[2025-10-13 17:28:53] Set ATHENA_CORE_NUMBER=4
[2025-10-13 17:28:53] Starting ATLAS job with PandaID=6840389940
[2025-10-13 17:28:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 18:48:12]  *** The last 200 lines of the pilot log: ***
[2025-10-13 18:48:12] 2025-10-13 16:46:51,283 | INFO     | monitor loop #366: job 0:6840389940 is in state 'finished'
[2025-10-13 18:48:12] 2025-10-13 16:46:51,284 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:48:12] 2025-10-13 16:46:52,193 | INFO     | time since job start (4673s) is within the limit (172800.0s)
[2025-10-13 18:48:12] 2025-10-13 16:46:53,786 | INFO     | monitor loop #367: job 0:6840389940 is in state 'finished'
[2025-10-13 18:48:12] 2025-10-13 16:46:53,787 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:48:12] 2025-10-13 16:46:54,198 | INFO     | time since job start (4675s) is within the limit (172800.0s)
[2025-10-13 18:48:12] 2025-10-13 16:46:56,201 | INFO     | time since job start (4677s) is within the limit (172800.0s)
[2025-10-13 18:48:12] 2025-10-13 16:46:56,290 | INFO     | monitor loop #368: job 0:6840389940 is in state 'finished'
[2025-10-13 18:48:12] 2025-10-13 16:46:56,290 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:48:12] 2025-10-13 16:46:58,204 | INFO     | time since job start (4679s) is within the limit (172800.0s)
[2025-10-13 18:48:12] 2025-10-13 16:46:58,793 | INFO     | monitor loop #369: job 0:6840389940 is in state 'finished'
[2025-10-13 18:48:12] 2025-10-13 16:46:58,793 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:48:12] 2025-10-13 16:47:00,209 | INFO     | time since job start (4681s) is within the limit (172800.0s)
[2025-10-13 18:48:12] 2025-10-13 16:47:01,293 | INFO     | monitor loop #370: job 0:6840389940 is in state 'finished'
[2025-10-13 18:48:12] 2025-10-13 16:47:01,294 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:48:12] 2025-10-13 16:47:02,214 | INFO     | time since job start (4683s) is within the limit (172800.0s)
[2025-10-13 18:48:12] 2025-10-13 16:47:03,268 | INFO     | PID=466527 has CPU usage=0.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 18:48:12] 2025-10-13 16:47:03,796 | INFO     | monitor loop #371: job 0:6840389940 is in state 'finished'
[2025-10-13 18:48:12] 2025-10-13 16:47:03,797 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:48:12] 2025-10-13 16:47:04,269 | INFO     | time since job start (4685s) is within the limit (172800.0s)
[2025-10-13 18:48:12] 2025-10-13 16:47:06,274 | INFO     | time since job start (4687s) is within the limit (172800.0s)
[2025-10-13 18:48:12] 2025-10-13 16:47:06,300 | INFO     | monitor loop #372: job 0:6840389940 is in state 'finished'
[2025-10-13 18:48:12] 2025-10-13 16:47:06,300 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:48:12] 2025-10-13 16:47:08,277 | INFO     | time since job start (4689s) is within the limit (172800.0s)
[2025-10-13 18:48:12] 2025-10-13 16:47:08,803 | INFO     | monitor loop #373: job 0:6840389940 is in state 'finished'
[2025-10-13 18:48:12] 2025-10-13 16:47:08,803 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:48:12] 2025-10-13 16:47:10,284 | INFO     | time since job start (4691s) is within the limit (172800.0s)
[2025-10-13 18:48:12] 2025-10-13 16:47:11,307 | INFO     | monitor loop #374: job 0:6840389940 is in state 'finished'
[2025-10-13 18:48:12] 2025-10-13 16:47:11,307 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:48:12] 2025-10-13 16:47:12,287 | INFO     | time since job start (4693s) is within the limit (172800.0s)
[2025-10-13 18:48:12] 2025-10-13 16:47:13,810 | INFO     | monitor loop #375: job 0:6840389940 is in state 'finished'
[2025-10-13 18:48:12] 2025-10-13 16:47:13,810 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:48:12] 2025-10-13 16:47:14,292 | INFO     | time since job start (4695s) is within the limit (172800.0s)
[2025-10-13 18:48:12] 2025-10-13 16:47:16,298 | INFO     | time since job start (4697s) is within the limit (172800.0s)
[2025-10-13 18:48:12] 2025-10-13 16:47:16,313 | INFO     | monitor loop #376: job 0:6840389940 is in state 'finished'
[2025-10-13 18:48:12] 2025-10-13 16:47:16,314 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:48:12] 2025-10-13 16:47:17,675 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 18:48:12] 2025-10-13 16:47:17,677 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 4320.550416666666
[2025-10-13 18:48:12] 2025-10-13 16:47:17,678 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6840389940/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 18:48:12] 2025-10-13 16:47:17,678 | INFO     | extracted standard info from prmon json
[2025-10-13 18:48:12] 2025-10-13 16:47:17,679 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 18:48:12] 2025-10-13 16:47:17,679 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 18:48:12] 2025-10-13 16:47:17,679 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 18:48:12] 2025-10-13 16:47:17,679 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 18:48:12] 2025-10-13 16:47:17,680 | INFO     | fitting pss+swap vs Time
[2025-10-13 18:48:12] 2025-10-13 16:47:17,680 | INFO     | sum of square deviations: 101843770.0
[2025-10-13 18:48:12] 2025-10-13 16:47:17,680 | INFO     | sum of deviations: -8621209971.0
[2025-10-13 18:48:12] 2025-10-13 16:47:17,680 | INFO     | mean x: 1760371736.0
[2025-10-13 18:48:12] 2025-10-13 16:47:17,680 | INFO     | mean y: 2555610.5217391304
[2025-10-13 18:48:12] 2025-10-13 16:47:17,680 | INFO     | -- intersect: 149020353783.83936
[2025-10-13 18:48:12] 2025-10-13 16:47:17,680 | INFO     | intersect: 149020353783.83936
[2025-10-13 18:48:12] 2025-10-13 16:47:17,680 | INFO     | chi2: 0.04499805825307506
[2025-10-13 18:48:12] 2025-10-13 16:47:17,680 | INFO     | -- intersect: 149020353783.83936
[2025-10-13 18:48:12] 2025-10-13 16:47:17,680 | INFO     | current memory leak: -84.65 B/s (using 69 data points, chi2=0.04)
[2025-10-13 18:48:12] 2025-10-13 16:47:17,680 | INFO     | could have reported an average CPU frequency of 4331 MHz (6 samples)
[2025-10-13 18:48:12] 2025-10-13 16:47:17,680 | INFO     | ..............................
[2025-10-13 18:48:12] 2025-10-13 16:47:17,680 | INFO     | . Timing measurements:
[2025-10-13 18:48:12] 2025-10-13 16:47:17,680 | INFO     | . get job = 0 s
[2025-10-13 18:48:12] 2025-10-13 16:47:17,681 | INFO     | . initial setup = 1 s
[2025-10-13 18:48:12] 2025-10-13 16:47:17,681 | INFO     | . payload setup = 2 s
[2025-10-13 18:48:12] 2025-10-13 16:47:17,681 | INFO     | . stage-in = 0 s
[2025-10-13 18:48:12] 2025-10-13 16:47:17,681 | INFO     | . payload execution = 4613 s
[2025-10-13 18:48:12] 2025-10-13 16:47:17,681 | INFO     | . stage-out = 0 s
[2025-10-13 18:48:12] 2025-10-13 16:47:17,681 | INFO     | . log creation = 0 s
[2025-10-13 18:48:12] 2025-10-13 16:47:17,681 | INFO     | ..............................
[2025-10-13 18:48:12] 2025-10-13 16:47:18,060 | INFO     | 
[2025-10-13 18:48:12] 2025-10-13 16:47:18,060 | INFO     | job summary report
[2025-10-13 18:48:12] 2025-10-13 16:47:18,060 | INFO     | --------------------------------------------------
[2025-10-13 18:48:12] 2025-10-13 16:47:18,060 | INFO     | PanDA job id: 6840389940
[2025-10-13 18:48:12] 2025-10-13 16:47:18,060 | INFO     | task id: 46676269
[2025-10-13 18:48:12] 2025-10-13 16:47:18,061 | INFO     | errors: (none)
[2025-10-13 18:48:12] 2025-10-13 16:47:18,061 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 18:48:12] 2025-10-13 16:47:18,061 | INFO     | pilot state: finished 
[2025-10-13 18:48:12] 2025-10-13 16:47:18,061 | INFO     | transexitcode: 0
[2025-10-13 18:48:12] 2025-10-13 16:47:18,061 | INFO     | exeerrorcode: 0
[2025-10-13 18:48:12] 2025-10-13 16:47:18,061 | INFO     | exeerrordiag: 
[2025-10-13 18:48:12] 2025-10-13 16:47:18,061 | INFO     | exitcode: 0
[2025-10-13 18:48:12] 2025-10-13 16:47:18,061 | INFO     | exitmsg: OK
[2025-10-13 18:48:12] 2025-10-13 16:47:18,061 | INFO     | cpuconsumptiontime: 17869 s
[2025-10-13 18:48:12] 2025-10-13 16:47:18,061 | INFO     | nevents: 400
[2025-10-13 18:48:12] 2025-10-13 16:47:18,061 | INFO     | neventsw: 0
[2025-10-13 18:48:12] 2025-10-13 16:47:18,061 | INFO     | pid: 472956
[2025-10-13 18:48:12] 2025-10-13 16:47:18,061 | INFO     | pgrp: 472956
[2025-10-13 18:48:12] 2025-10-13 16:47:18,061 | INFO     | corecount: 4
[2025-10-13 18:48:12] 2025-10-13 16:47:18,061 | INFO     | event service: False
[2025-10-13 18:48:12] 2025-10-13 16:47:18,061 | INFO     | sizes: {0: 2348807, 2: 2349069, 11: 2349097, 4619: 2375365, 4620: 2384363, 4622: 2384419, 4686: 2384741}
[2025-10-13 18:48:12] 2025-10-13 16:47:18,061 | INFO     | --------------------------------------------------
[2025-10-13 18:48:12] 2025-10-13 16:47:18,061 | INFO     | 
[2025-10-13 18:48:12] 2025-10-13 16:47:18,061 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-13 18:48:12] 2025-10-13 16:47:18,077 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 18:48:12] 2025-10-13 16:47:18,078 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 18:48:12] 2025-10-13 16:47:18,078 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 18:48:12] 2025-10-13 16:47:18,078 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 18:48:12] 2025-10-13 16:47:18,078 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 18:48:12] 2025-10-13 16:47:18,078 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 18:48:12] 2025-10-13 16:47:18,078 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 18:48:12] 2025-10-13 16:47:18,078 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 18:48:12] 2025-10-13 16:47:18,078 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 18:48:12] 2025-10-13 16:47:18,078 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 18:48:12] 2025-10-13 16:47:18,078 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 18:48:12] 2025-10-13 16:47:18,078 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 18:48:12] 2025-10-13 16:47:18,078 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 18:48:12] 2025-10-13 16:47:18,078 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 18:48:12] 2025-10-13 16:47:18,078 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 18:48:12] 2025-10-13 16:47:18,078 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 18:48:12] 2025-10-13 16:47:18,078 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 18:48:12] 2025-10-13 16:47:18,078 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 18:48:12] 2025-10-13 16:47:18,078 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 18:48:12] 2025-10-13 16:47:18,078 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 18:48:12] 2025-10-13 16:47:18,078 | INFO     | job 6840389940 has completed (purged errors)
[2025-10-13 18:48:12] 2025-10-13 16:47:18,078 | INFO     | overall cleanup function is called
[2025-10-13 18:48:12] 2025-10-13 16:47:19,083 | INFO     | --- collectZombieJob: --- 10, [472956]
[2025-10-13 18:48:12] 2025-10-13 16:47:19,084 | INFO     | zombie collector waiting for pid 472956
[2025-10-13 18:48:12] 2025-10-13 16:47:19,084 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 18:48:12] 2025-10-13 16:47:19,084 | INFO     | collected zombie processes
[2025-10-13 18:48:12] 2025-10-13 16:47:19,084 | INFO     | will attempt to kill all subprocesses of pid=472956
[2025-10-13 18:48:12] 2025-10-13 16:47:19,123 | INFO     | process IDs to be killed: [472956] (in reverse order)
[2025-10-13 18:48:12] 2025-10-13 16:47:19,150 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 18:48:12] 2025-10-13 16:47:19,150 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 18:48:12] 2025-10-13 16:47:19,152 | INFO     | did not find any defunct processes belonging to 472956
[2025-10-13 18:48:12] 2025-10-13 16:47:19,153 | INFO     | did not find any defunct processes belonging to 472956
[2025-10-13 18:48:12] 2025-10-13 16:47:19,153 | INFO     | ready for new job
[2025-10-13 18:48:12] 2025-10-13 16:47:19,153 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 18:48:12] 2025-10-13 16:47:19,154 | INFO     | ***************************************
[2025-10-13 18:48:12] 2025-10-13 16:47:19,154 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 18:48:12] 2025-10-13 16:47:19,154 | INFO     | ***************************************
[2025-10-13 18:48:12] 2025-10-13 16:47:19,155 | INFO     | 
[2025-10-13 18:48:12] 2025-10-13 16:47:19,155 | INFO     | architecture information:
[2025-10-13 18:48:12] 2025-10-13 16:47:19,155 | INFO     | executing command: cat /etc/os-release
[2025-10-13 18:48:12] 2025-10-13 16:47:19,165 | INFO     | cat /etc/os-release:
[2025-10-13 18:48:12] NAME="CentOS Linux"
[2025-10-13 18:48:12] VERSION="7 (Core)"
[2025-10-13 18:48:12] ID="centos"
[2025-10-13 18:48:12] ID_LIKE="rhel fedora"
[2025-10-13 18:48:12] VERSION_ID="7"
[2025-10-13 18:48:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 18:48:12] ANSI_COLOR="0;31"
[2025-10-13 18:48:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 18:48:12] HOME_URL="https://www.centos.org/"
[2025-10-13 18:48:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 18:48:12] 
[2025-10-13 18:48:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 18:48:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 18:48:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 18:48:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 18:48:12] 
[2025-10-13 18:48:12] 2025-10-13 16:47:19,165 | INFO     | ***************************************
[2025-10-13 18:48:12] 2025-10-13 16:47:19,668 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-13 18:48:12] 2025-10-13 16:47:19,681 | INFO     | sufficient remaining disk space (100194582528 B)
[2025-10-13 18:48:12] 2025-10-13 16:47:19,681 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 18:48:12] 2025-10-13 16:47:19,681 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 18:48:12] 2025-10-13 16:47:19,681 | INFO     | update_server=False
[2025-10-13 18:48:12] 2025-10-13 16:47:19,681 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 18:48:12] 2025-10-13 16:47:19,682 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 18:48:12] 2025-10-13 16:47:19,820 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 18:48:12] 2025-10-13 16:47:19,820 | INFO     | aborting loop
[2025-10-13 18:48:12] 2025-10-13 16:47:19,940 | INFO     | all data control threads have been joined
[2025-10-13 18:48:12] 2025-10-13 16:47:19,970 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 18:48:12] 2025-10-13 16:47:20,687 | INFO     | [job] retrieve thread has finished
[2025-10-13 18:48:12] 2025-10-13 16:47:20,687 | INFO     | [job] queue monitor thread has finished
[2025-10-13 18:48:12] 2025-10-13 16:47:20,702 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 18:48:12] 2025-10-13 16:47:20,703 | INFO     | all job control threads have been joined
[2025-10-13 18:48:12] 2025-10-13 16:47:20,769 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 18:48:12] 2025-10-13 16:47:20,780 | INFO     | all payload control threads have been joined
[2025-10-13 18:48:12] 2025-10-13 16:47:20,812 | INFO     | [payload] failed_post thread has finished
[2025-10-13 18:48:12] 2025-10-13 16:47:20,823 | INFO     | [job] job monitor thread has finished
[2025-10-13 18:48:12] 2025-10-13 16:47:20,946 | INFO     | [data] control thread has finished
[2025-10-13 18:48:12] 2025-10-13 16:47:21,292 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 18:48:12] 2025-10-13 16:47:21,313 | INFO     | [data] copytool_in thread has finished
[2025-10-13 18:48:12] 2025-10-13 16:47:21,340 | INFO     | [payload] validate_post thread has finished
[2025-10-13 18:48:12] 2025-10-13 16:47:21,707 | INFO     | [job] control thread has finished
[2025-10-13 18:48:12] 2025-10-13 16:47:21,783 | INFO     | [payload] control thread has finished
[2025-10-13 18:48:12] 2025-10-13 16:47:21,974 | INFO     | [data] copytool_out thread has finished
[2025-10-13 18:48:12] 2025-10-13 16:47:22,117 | INFO     | [job] validate thread has finished
[2025-10-13 18:48:12] 2025-10-13 16:47:22,926 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 18:48:12] 2025-10-13 16:47:26,930 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 18:48:12] 2025-10-13 16:47:30,490 | INFO     | job.realtimelogging is not enabled
[2025-10-13 18:48:12] 2025-10-13 16:47:31,494 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 18:48:12] 2025-10-13 16:47:49,402 | INFO     | PID=466527 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 18:48:12] 2025-10-13 16:47:49,403 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 18:48:12] 2025-10-13 16:47:49,403 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 18:48:12] 2025-10-13 16:47:49,403 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 18:48:12] 2025-10-13 16:48:06,310 | INFO     | [monitor] cgroup control has ended
[2025-10-13 18:48:12] 2025-10-13 16:48:07,082 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140581250971456)>', '<ExcThread(monitor, started 140580738799360)>']
[2025-10-13 18:48:12] 2025-10-13 16:48:07,473 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 18:48:12] 2025-10-13 16:48:07,474 | INFO     | [monitor] control thread has ended
[2025-10-13 18:48:12] 2025-10-13 16:48:12,108 | INFO     | all workflow threads have been joined
[2025-10-13 18:48:12] 2025-10-13 16:48:12,108 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 18:48:12] 2025-10-13 16:48:12,108 | INFO     | traces error code: 0
[2025-10-13 18:48:12] 2025-10-13 16:48:12,108 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 18:48:12] 2025-10-13 16:48:12,194 [wrapper] ==== pilot stdout END ====
[2025-10-13 18:48:12] 2025-10-13 16:48:12,195 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 18:48:12] 2025-10-13 16:48:12,196 [wrapper] pilotpid: 466527
[2025-10-13 18:48:12] 2025-10-13 16:48:12,198 [wrapper] Pilot exit status: 0
[2025-10-13 18:48:12] 2025-10-13 16:48:12,205 [wrapper] pandaids: 6840389940
[2025-10-13 18:48:12] 2025-10-13 16:48:12,221 [wrapper] cleanup supervisor_pilot  484579 466528
[2025-10-13 18:48:12] 2025-10-13 16:48:12,224 [wrapper] Test setup, not cleaning
[2025-10-13 18:48:12] 2025-10-13 16:48:12,228 [wrapper] apfmon messages muted
[2025-10-13 18:48:12] 2025-10-13 16:48:12,229 [wrapper] ==== wrapper stdout END ====
[2025-10-13 18:48:12] 2025-10-13 16:48:12,231 [wrapper] ==== wrapper stderr END ====
[2025-10-13 18:48:12]  *** Error codes and diagnostics ***
[2025-10-13 18:48:12]     "exeErrorCode": 0,
[2025-10-13 18:48:12]     "exeErrorDiag": "",
[2025-10-13 18:48:12]     "pilotErrorCode": 0,
[2025-10-13 18:48:12]     "pilotErrorDiag": "",
[2025-10-13 18:48:12]  *** Listing of results directory ***
[2025-10-13 18:48:12] insgesamt 410820
[2025-10-13 18:48:12] -rw-r--r-- 1 boinc boinc    557409 12. Okt 18:01 pilot3.tar.gz
[2025-10-13 18:48:12] -rwx------ 1 boinc boinc     36292 12. Okt 18:05 runpilot2-wrapper.sh
[2025-10-13 18:48:12] -rw-r--r-- 1 boinc boinc      5112 12. Okt 18:05 queuedata.json
[2025-10-13 18:48:12] -rw-r--r-- 1 boinc boinc       100 13. Okt 17:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 18:48:12] -rwxr-xr-x 1 boinc boinc      7986 13. Okt 17:28 run_atlas
[2025-10-13 18:48:12] -rw-r--r-- 1 boinc boinc       105 13. Okt 17:28 job.xml
[2025-10-13 18:48:12] -rw-r--r-- 2 boinc boinc     15120 13. Okt 17:28 start_atlas.sh
[2025-10-13 18:48:12] drwxrwx--x 2 boinc boinc      4096 13. Okt 17:28 shared
[2025-10-13 18:48:12] -rw-r--r-- 2 boinc boinc    569686 13. Okt 17:28 input.tar.gz
[2025-10-13 18:48:12] -rw-r--r-- 2 boinc boinc 220021144 13. Okt 17:28 EVNT.46676267._001614.pool.root.1
[2025-10-13 18:48:12] -rw-r--r-- 1 boinc boinc         0 13. Okt 17:28 boinc_lockfile
[2025-10-13 18:48:12] -rw-r--r-- 1 boinc boinc      2550 13. Okt 17:28 pandaJob.out
[2025-10-13 18:48:12] -rw------- 1 boinc boinc    972783 13. Okt 17:28 agis_schedconf.cvmfs.json
[2025-10-13 18:48:12] -rw------- 1 boinc boinc   1560580 13. Okt 17:28 agis_ddmendpoints.agis.ALL.json
[2025-10-13 18:48:12] drwx------ 5 boinc boinc      4096 13. Okt 17:28 pilot3
[2025-10-13 18:48:12] -rw-r--r-- 1 boinc boinc      9630 13. Okt 18:30 init_data.xml
[2025-10-13 18:48:12] -rw------- 1 boinc boinc 194823864 13. Okt 18:45 HITS.46676269._083066.pool.root.1
[2025-10-13 18:48:12] -rw------- 1 boinc boinc      1020 13. Okt 18:46 memory_monitor_summary.json
[2025-10-13 18:48:12] -rw------- 1 boinc boinc    271884 13. Okt 18:46 log.46676269._083066.job.log.tgz.1
[2025-10-13 18:48:12] -rw-r--r-- 1 boinc boinc       529 13. Okt 18:46 boinc_task_state.xml
[2025-10-13 18:48:12] -rw------- 1 boinc boinc      7763 13. Okt 18:47 heartbeat.json
[2025-10-13 18:48:12] -rw------- 1 boinc boinc        95 13. Okt 18:47 pilot_heartbeat.json
[2025-10-13 18:48:12] -rw-r--r-- 1 boinc boinc      8192 13. Okt 18:48 boinc_mmap_file
[2025-10-13 18:48:12] -rw-r--r-- 1 boinc boinc        27 13. Okt 18:48 wrapper_checkpoint.txt
[2025-10-13 18:48:12] -rw------- 1 boinc boinc      4820 13. Okt 18:48 pilotlog.txt
[2025-10-13 18:48:12] -rw------- 1 boinc boinc    688369 13. Okt 18:48 log.46676269._083066.job.log.1
[2025-10-13 18:48:12] -rw------- 1 boinc boinc       357 13. Okt 18:48 output.list
[2025-10-13 18:48:12] -rw-r--r-- 1 boinc boinc       620 13. Okt 18:48 runtime_log
[2025-10-13 18:48:12] -rw------- 1 boinc boinc    983040 13. Okt 18:48 result.tar.gz
[2025-10-13 18:48:12] -rw-r--r-- 1 boinc boinc      8663 13. Okt 18:48 runtime_log.err
[2025-10-13 18:48:12] -rw------- 1 boinc boinc       640 13. Okt 18:48 hJJLDmZkDS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm7YkNDmPyIZEo.diag
[2025-10-13 18:48:12] -rw-r--r-- 1 boinc boinc     21977 13. Okt 18:48 stderr.txt
[2025-10-13 18:48:12] HITS file was successfully produced:
[2025-10-13 18:48:12] -rw------- 1 boinc boinc 194823864 13. Okt 18:45 shared/HITS.pool.root.1
[2025-10-13 18:48:12]  *** Contents of shared directory: ***
[2025-10-13 18:48:12] insgesamt 406672
[2025-10-13 18:48:12] -rw-r--r-- 2 boinc boinc     15120 13. Okt 17:28 start_atlas.sh
[2025-10-13 18:48:12] -rw-r--r-- 2 boinc boinc    569686 13. Okt 17:28 input.tar.gz
[2025-10-13 18:48:12] -rw-r--r-- 2 boinc boinc 220021144 13. Okt 17:28 ATLAS.root_0
[2025-10-13 18:48:12] -rw------- 1 boinc boinc 194823864 13. Okt 18:45 HITS.pool.root.1
[2025-10-13 18:48:12] -rw------- 1 boinc boinc    983040 13. Okt 18:48 result.tar.gz
18:48:14 (462814): run_atlas exited; CPU time 17892.504642
18:48:14 (462814): called boinc_finish(0)

</stderr_txt>
]]>

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