Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:46:15 (2006101): wrapper (7.7.26015): starting
06:46:15 (2006101): wrapper: running run_atlas (--nthreads 2)
[2025-10-13 06:46:15] Arguments: --nthreads 2
[2025-10-13 06:46:15] Threads: 2
[2025-10-13 06:46:15] Checking for CVMFS
[2025-10-13 06:46:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 06:46:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 06:46:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 06:46:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 06:46:15] 2.9.2.0 779100 5358 61072 151649 0 57 19639641 36864001 0 130560 0 3245483 99.989 184590 801 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 06:46:15] CVMFS is ok
[2025-10-13 06:46:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 06:46:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 06:46:15] Further information can be found at the LHC@home message board.
[2025-10-13 06:46:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 06:46:15] Checking for apptainer binary...
[2025-10-13 06:46:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 06:46:15] Running /usr/bin/apptainer --version
[2025-10-13 06:46:15] apptainer version 1.4.1-1.1
[2025-10-13 06:46:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 06:46:15] atlasA229
[2025-10-13 06:46:15] apptainer works
[2025-10-13 06:46:15] Set ATHENA_PROC_NUMBER=2
[2025-10-13 06:46:15] Set ATHENA_CORE_NUMBER=2
[2025-10-13 06:46:15] Starting ATLAS job with PandaID=6840181804
[2025-10-13 06:46:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 08:47:43]  *** The last 200 lines of the pilot log: ***
[2025-10-13 08:47:43] 2025-10-13 06:47:04,374 | INFO     | --- collectZombieJob: --- 10, [2016220]
[2025-10-13 08:47:43] 2025-10-13 06:47:04,374 | INFO     | zombie collector waiting for pid 2016220
[2025-10-13 08:47:43] 2025-10-13 06:47:04,374 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 08:47:43] 2025-10-13 06:47:04,374 | INFO     | collected zombie processes
[2025-10-13 08:47:43] 2025-10-13 06:47:04,375 | INFO     | will attempt to kill all subprocesses of pid=2016220
[2025-10-13 08:47:43] 2025-10-13 06:47:04,408 | INFO     | process IDs to be killed: [2016220] (in reverse order)
[2025-10-13 08:47:43] 2025-10-13 06:47:04,430 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 08:47:43] 2025-10-13 06:47:04,430 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 08:47:43] 2025-10-13 06:47:04,430 | INFO     | did not find any defunct processes belonging to 2016220
[2025-10-13 08:47:43] 2025-10-13 06:47:04,431 | INFO     | did not find any defunct processes belonging to 2016220
[2025-10-13 08:47:43] 2025-10-13 06:47:04,431 | INFO     | ready for new job
[2025-10-13 08:47:43] 2025-10-13 06:47:04,431 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 08:47:43] 2025-10-13 06:47:04,432 | INFO     | ***************************************
[2025-10-13 08:47:43] 2025-10-13 06:47:04,432 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 08:47:43] 2025-10-13 06:47:04,432 | INFO     | ***************************************
[2025-10-13 08:47:43] 2025-10-13 06:47:04,432 | INFO     | 
[2025-10-13 08:47:43] 2025-10-13 06:47:04,432 | INFO     | architecture information:
[2025-10-13 08:47:43] 2025-10-13 06:47:04,432 | INFO     | executing command: cat /etc/os-release
[2025-10-13 08:47:43] 2025-10-13 06:47:04,441 | INFO     | cat /etc/os-release:
[2025-10-13 08:47:43] NAME="CentOS Linux"
[2025-10-13 08:47:43] VERSION="7 (Core)"
[2025-10-13 08:47:43] ID="centos"
[2025-10-13 08:47:43] ID_LIKE="rhel fedora"
[2025-10-13 08:47:43] VERSION_ID="7"
[2025-10-13 08:47:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 08:47:43] ANSI_COLOR="0;31"
[2025-10-13 08:47:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 08:47:43] HOME_URL="https://www.centos.org/"
[2025-10-13 08:47:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 08:47:43] 
[2025-10-13 08:47:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 08:47:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 08:47:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 08:47:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 08:47:43] 
[2025-10-13 08:47:43] 2025-10-13 06:47:04,441 | INFO     | ***************************************
[2025-10-13 08:47:43] 2025-10-13 06:47:04,945 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 08:47:43] 2025-10-13 06:47:04,975 | INFO     | sufficient remaining disk space (341078704128 B)
[2025-10-13 08:47:43] 2025-10-13 06:47:04,976 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 08:47:43] 2025-10-13 06:47:04,976 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 08:47:43] 2025-10-13 06:47:04,977 | INFO     | update_server=False
[2025-10-13 08:47:43] 2025-10-13 06:47:04,977 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 08:47:43] 2025-10-13 06:47:04,977 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 08:47:43] 2025-10-13 06:47:04,978 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:47:43] 2025-10-13 06:47:04,978 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 08:47:43] 2025-10-13 06:47:04,979 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:47:43] 2025-10-13 06:47:04,979 | INFO     | aborting loop
[2025-10-13 08:47:43] 2025-10-13 06:47:05,031 | INFO     | all data control threads have been joined
[2025-10-13 08:47:43] 2025-10-13 06:47:05,324 | INFO     | all payload control threads have been joined
[2025-10-13 08:47:43] 2025-10-13 06:47:05,981 | INFO     | [job] retrieve thread has finished
[2025-10-13 08:47:43] 2025-10-13 06:47:05,981 | INFO     | [job] queue monitor thread has finished
[2025-10-13 08:47:43] 2025-10-13 06:47:05,984 | INFO     | [job] job monitor thread has finished
[2025-10-13 08:47:43] 2025-10-13 06:47:06,037 | INFO     | [data] control thread has finished
[2025-10-13 08:47:43] 2025-10-13 06:47:06,074 | INFO     | all job control threads have been joined
[2025-10-13 08:47:43] 2025-10-13 06:47:06,092 | INFO     | [payload] validate_post thread has finished
[2025-10-13 08:47:43] 2025-10-13 06:47:06,112 | INFO     | [data] copytool_in thread has finished
[2025-10-13 08:47:43] 2025-10-13 06:47:06,331 | INFO     | [payload] control thread has finished
[2025-10-13 08:47:43] 2025-10-13 06:47:06,588 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 08:47:43] 2025-10-13 06:47:06,693 | INFO     | [payload] failed_post thread has finished
[2025-10-13 08:47:43] 2025-10-13 06:47:06,767 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 08:47:43] 2025-10-13 06:47:06,847 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 08:47:43] 2025-10-13 06:47:06,964 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 08:47:43] 2025-10-13 06:47:06,983 | INFO     | [data] copytool_out thread has finished
[2025-10-13 08:47:43] 2025-10-13 06:47:07,035 | INFO     | [job] validate thread has finished
[2025-10-13 08:47:43] 2025-10-13 06:47:07,080 | INFO     | [job] control thread has finished
[2025-10-13 08:47:43] 2025-10-13 06:47:08,985 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 08:47:43] 2025-10-13 06:47:34,511 | INFO     | PID=2009806 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 08:47:43] 2025-10-13 06:47:34,511 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 08:47:43] 2025-10-13 06:47:34,511 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 08:47:43] 2025-10-13 06:47:34,512 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 08:47:43] 2025-10-13 06:47:38,810 | INFO     | [monitor] cgroup control has ended
[2025-10-13 08:47:43] 2025-10-13 06:47:38,837 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140587244767040)>', '<ExcThread(monitor, started 140586619234048)>']
[2025-10-13 08:47:43] 2025-10-13 06:47:39,539 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 08:47:43] 2025-10-13 06:47:39,539 | INFO     | [monitor] control thread has ended
[2025-10-13 08:47:43] 2025-10-13 06:47:43,863 | INFO     | all workflow threads have been joined
[2025-10-13 08:47:43] 2025-10-13 06:47:43,864 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 08:47:43] 2025-10-13 06:47:43,864 | INFO     | traces error code: 0
[2025-10-13 08:47:43] 2025-10-13 06:47:43,865 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 08:47:43] 2025-10-13 06:47:43,907 [wrapper] ==== pilot stdout END ====
[2025-10-13 08:47:43] 2025-10-13 06:47:43,910 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 08:47:43] 2025-10-13 06:47:43,913 [wrapper] pilotpid: 2009806
[2025-10-13 08:47:43] 2025-10-13 06:47:43,915 [wrapper] Pilot exit status: 0
[2025-10-13 08:47:43] 2025-10-13 06:47:43,922 [wrapper] pandaids: 6840181804
[2025-10-13 08:47:43] 2025-10-13 06:47:43,936 [wrapper] cleanup supervisor_pilot 2030325 2009807
[2025-10-13 08:47:43] 2025-10-13 06:47:43,938 [wrapper] Test setup, not cleaning
[2025-10-13 08:47:43] 2025-10-13 06:47:43,941 [wrapper] apfmon messages muted
[2025-10-13 08:47:43] 2025-10-13 06:47:43,942 [wrapper] ==== wrapper stdout END ====
[2025-10-13 08:47:43] 2025-10-13 06:47:43,944 [wrapper] ==== wrapper stderr END ====
[2025-10-13 08:47:43]  *** Error codes and diagnostics ***
[2025-10-13 08:47:43]     "exeErrorCode": 0,
[2025-10-13 08:47:43]     "exeErrorDiag": "",
[2025-10-13 08:47:43]     "pilotErrorCode": 0,
[2025-10-13 08:47:43]     "pilotErrorDiag": "",
[2025-10-13 08:47:43]  *** Listing of results directory ***
[2025-10-13 08:47:44] total 408684
[2025-10-13 08:47:44] -rw-r--r-- 1 boinc boinc    557409 Oct 12 15:55 pilot3.tar.gz
[2025-10-13 08:47:44] -rwx------ 1 boinc boinc     36292 Oct 12 16:24 runpilot2-wrapper.sh
[2025-10-13 08:47:44] -rw-r--r-- 1 boinc boinc      5112 Oct 12 16:24 queuedata.json
[2025-10-13 08:47:44] -rw-r--r-- 1 boinc boinc       100 Oct 13 06:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 08:47:44] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 06:46 run_atlas
[2025-10-13 08:47:44] -rw-r--r-- 1 boinc boinc       105 Oct 13 06:46 job.xml
[2025-10-13 08:47:44] -rw-r--r-- 2 boinc boinc 220558471 Oct 13 06:46 EVNT.46676267._004235.pool.root.1
[2025-10-13 08:47:44] -rw-r--r-- 2 boinc boinc    569678 Oct 13 06:46 input.tar.gz
[2025-10-13 08:47:44] -rw-r--r-- 2 boinc boinc     15120 Oct 13 06:46 start_atlas.sh
[2025-10-13 08:47:44] drwxrwx--x 2 boinc boinc      4096 Oct 13 06:46 shared
[2025-10-13 08:47:44] -rw-r--r-- 1 boinc boinc         0 Oct 13 06:46 boinc_setup_complete
[2025-10-13 08:47:44] -rw-r--r-- 1 boinc boinc      6206 Oct 13 06:46 init_data.xml
[2025-10-13 08:47:44] -rw-r--r-- 1 boinc boinc         0 Oct 13 06:46 boinc_lockfile
[2025-10-13 08:47:44] -rw-r--r-- 1 boinc boinc      2550 Oct 13 06:46 pandaJob.out
[2025-10-13 08:47:44] -rw------- 1 boinc boinc    974365 Oct 13 06:46 agis_schedconf.cvmfs.json
[2025-10-13 08:47:44] -rw------- 1 boinc boinc   1560580 Oct 13 06:46 agis_ddmendpoints.agis.ALL.json
[2025-10-13 08:47:44] drwx------ 5 boinc boinc      4096 Oct 13 06:46 pilot3
[2025-10-13 08:47:44] -rw-r--r-- 1 boinc boinc       529 Oct 13 08:46 boinc_task_state.xml
[2025-10-13 08:47:44] -rw------- 1 boinc boinc 191394352 Oct 13 08:46 HITS.46676269._080679.pool.root.1
[2025-10-13 08:47:44] -rw------- 1 boinc boinc      1017 Oct 13 08:46 memory_monitor_summary.json
[2025-10-13 08:47:44] -rw------- 1 boinc boinc    280145 Oct 13 08:46 log.46676269._080679.job.log.tgz.1
[2025-10-13 08:47:44] -rw------- 1 boinc boinc        95 Oct 13 08:47 pilot_heartbeat.json
[2025-10-13 08:47:44] -rw------- 1 boinc boinc      7764 Oct 13 08:47 heartbeat.json
[2025-10-13 08:47:44] -rw-r--r-- 1 boinc boinc        27 Oct 13 08:47 wrapper_checkpoint.txt
[2025-10-13 08:47:44] -rw-r--r-- 1 boinc boinc      8192 Oct 13 08:47 boinc_mmap_file
[2025-10-13 08:47:44] -rw------- 1 boinc boinc      4752 Oct 13 08:47 pilotlog.txt
[2025-10-13 08:47:44] -rw------- 1 boinc boinc   1040427 Oct 13 08:47 log.46676269._080679.job.log.1
[2025-10-13 08:47:44] -rw------- 1 boinc boinc       357 Oct 13 08:47 output.list
[2025-10-13 08:47:44] -rw-r--r-- 1 boinc boinc       620 Oct 13 08:47 runtime_log
[2025-10-13 08:47:44] -rw------- 1 boinc boinc   1341440 Oct 13 08:47 result.tar.gz
[2025-10-13 08:47:44] -rw-r--r-- 1 boinc boinc      8792 Oct 13 08:47 runtime_log.err
[2025-10-13 08:47:44] -rw------- 1 boinc boinc       662 Oct 13 08:47 c2LMDmWBCS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmoEkNDmmc7kun.diag
[2025-10-13 08:47:44] -rw-r--r-- 1 boinc boinc     10615 Oct 13 08:47 stderr.txt
[2025-10-13 08:47:44] HITS file was successfully produced:
[2025-10-13 08:47:44] -rw------- 1 boinc boinc 191394352 Oct 13 08:46 shared/HITS.pool.root.1
[2025-10-13 08:47:44]  *** Contents of shared directory: ***
[2025-10-13 08:47:44] total 404200
[2025-10-13 08:47:44] -rw-r--r-- 2 boinc boinc 220558471 Oct 13 06:46 ATLAS.root_0
[2025-10-13 08:47:44] -rw-r--r-- 2 boinc boinc    569678 Oct 13 06:46 input.tar.gz
[2025-10-13 08:47:44] -rw-r--r-- 2 boinc boinc     15120 Oct 13 06:46 start_atlas.sh
[2025-10-13 08:47:44] -rw------- 1 boinc boinc 191394352 Oct 13 08:46 HITS.pool.root.1
[2025-10-13 08:47:44] -rw------- 1 boinc boinc   1341440 Oct 13 08:47 result.tar.gz
08:47:45 (2006101): run_atlas exited; CPU time 14045.591874
08:47:45 (2006101): called boinc_finish(0)

</stderr_txt>
]]>

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