Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:33:47 (17847): wrapper (7.7.26015): starting
15:33:47 (17847): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 15:33:47] Arguments: --nthreads 12
[2025-10-12 15:33:47] Threads: 12
[2025-10-12 15:33:47] Checking for CVMFS
[2025-10-12 15:33:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 15:33:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 15:33:47] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 15:33:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 15:33:47] 2.11.2.0 3009 8574 83468 151635 2 9 18743074 20275200 1 130560 0 8163571 99.993 287661 43624 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 15:33:47] CVMFS is ok
[2025-10-12 15:33:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 15:33:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 15:33:47] Further information can be found at the LHC@home message board.
[2025-10-12 15:33:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 15:33:47] Checking for apptainer binary...
[2025-10-12 15:33:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 15:33:47] Running /usr/bin/apptainer --version
[2025-10-12 15:33:47] apptainer version 1.3.2-1.el7
[2025-10-12 15:33:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 15:33:49] c-115-42.aglt2.org
[2025-10-12 15:33:49] apptainer works
[2025-10-12 15:33:49] Set ATHENA_PROC_NUMBER=12
[2025-10-12 15:33:49] Set ATHENA_CORE_NUMBER=12
[2025-10-12 15:33:49] Starting ATLAS job with PandaID=6840225908
[2025-10-12 15:33:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 16:41:21]  *** The last 200 lines of the pilot log: ***
[2025-10-12 16:41:21]  status=None
[2025-10-12 16:41:21]  status_code=0
[2025-10-12 16:41:21]  storage_token=
[2025-10-12 16:41:21]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840225908/log.46676269._082948.job.log.tgz.1
[2025-10-12 16:41:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a1/d4/log.46676269._082948.job.log.tgz.1
[2025-10-12 16:41:21]  workdir=None
[2025-10-12 16:41:21] ]
[2025-10-12 16:41:21] 2025-10-12 20:40:41,548 | INFO     | transferring file log.46676269._082948.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840225908/log.46676269._082948.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 16:41:21] 2025-10-12 20:40:41,548 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840225908/log.46676269._082948.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._082948.job
[2025-10-12 16:41:21] 2025-10-12 20:40:41,570 | INFO     | adding to output.list: log.46676269._082948.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a1/d4/log.46676269._082948.job.log.tg
[2025-10-12 16:41:21] 2025-10-12 20:40:41,571 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 16:41:21] 2025-10-12 20:40:41,572 | INFO     | summary of transferred files:
[2025-10-12 16:41:21] 2025-10-12 20:40:41,572 | INFO     |  -- lfn=log.46676269._082948.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 16:41:21] 2025-10-12 20:40:41,572 | INFO     | stage-out finished correctly
[2025-10-12 16:41:21] 2025-10-12 20:40:41,651 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 16:41:21] 2025-10-12 20:40:42,247 | INFO     | time since job start (3999s) is within the limit (172800.0s)
[2025-10-12 16:41:21] 2025-10-12 20:40:43,578 | WARNING  | process 27994 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 16:41:21] 2025-10-12 20:40:43,578 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840225908/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 16:41:21] 2025-10-12 20:40:43,662 | INFO     | number of running child processes to parent process 27994: 1
[2025-10-12 16:41:21] 2025-10-12 20:40:43,662 | INFO     | maximum number of monitored processes: 6
[2025-10-12 16:41:21] 2025-10-12 20:40:44,250 | INFO     | time since job start (4001s) is within the limit (172800.0s)
[2025-10-12 16:41:21] 2025-10-12 20:40:44,379 | INFO     | job 6840225908 has state=finished
[2025-10-12 16:41:21] 2025-10-12 20:40:44,379 | INFO     | preparing for final server update for job 6840225908 in state='finished'
[2025-10-12 16:41:21] 2025-10-12 20:40:44,380 | INFO     | this job has now completed (state=finished)
[2025-10-12 16:41:21] 2025-10-12 20:40:44,380 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 16:41:21] 2025-10-12 20:40:44,380 | INFO     | log transfer has been attempted: DONE
[2025-10-12 16:41:21] 2025-10-12 20:40:44,381 | INFO     | job 6840225908 has finished - writing final server update
[2025-10-12 16:41:21] 2025-10-12 20:40:44,381 | INFO     | total number of processed events: 400 (read)
[2025-10-12 16:41:21] 2025-10-12 20:40:44,382 | INFO     | executing command: lscpu
[2025-10-12 16:41:21] 2025-10-12 20:40:44,407 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 16:41:21] 2025-10-12 20:40:46,163 | INFO     | monitor loop #298: job 0:6840225908 is in state 'finished'
[2025-10-12 16:41:21] 2025-10-12 20:40:46,163 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:41:21] 2025-10-12 20:40:46,255 | INFO     | time since job start (4003s) is within the limit (172800.0s)
[2025-10-12 16:41:21] 2025-10-12 20:40:48,260 | INFO     | time since job start (4005s) is within the limit (172800.0s)
[2025-10-12 16:41:21] 2025-10-12 20:40:48,666 | INFO     | monitor loop #299: job 0:6840225908 is in state 'finished'
[2025-10-12 16:41:21] 2025-10-12 20:40:48,666 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:41:21] 2025-10-12 20:40:48,831 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 16:41:21] 2025-10-12 20:40:48,835 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1773.4166666666667
[2025-10-12 16:41:21] 2025-10-12 20:40:48,837 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840225908/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 16:41:21] 2025-10-12 20:40:48,838 | INFO     | extracted standard info from prmon json
[2025-10-12 16:41:21] 2025-10-12 20:40:48,838 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 16:41:21] 2025-10-12 20:40:48,838 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 16:41:21] 2025-10-12 20:40:48,838 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 16:41:21] 2025-10-12 20:40:48,838 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 16:41:21] 2025-10-12 20:40:48,840 | INFO     | fitting pss+swap vs Time
[2025-10-12 16:41:21] 2025-10-12 20:40:48,840 | INFO     | sum of square deviations: 63666310.0
[2025-10-12 16:41:21] 2025-10-12 20:40:48,840 | INFO     | sum of deviations: -6147142142.0
[2025-10-12 16:41:21] 2025-10-12 20:40:48,841 | INFO     | mean x: 1760299745.0
[2025-10-12 16:41:21] 2025-10-12 20:40:48,841 | INFO     | mean y: 2879522.7288135593
[2025-10-12 16:41:21] 2025-10-12 20:40:48,841 | INFO     | -- intersect: 169964241270.27402
[2025-10-12 16:41:21] 2025-10-12 20:40:48,841 | INFO     | intersect: 169964241270.27402
[2025-10-12 16:41:21] 2025-10-12 20:40:48,841 | INFO     | chi2: 0.05860561670103271
[2025-10-12 16:41:21] 2025-10-12 20:40:48,841 | INFO     | -- intersect: 169964241270.27402
[2025-10-12 16:41:21] 2025-10-12 20:40:48,842 | INFO     | current memory leak: -96.55 B/s (using 59 data points, chi2=0.06)
[2025-10-12 16:41:21] 2025-10-12 20:40:48,842 | INFO     | could have reported an average CPU frequency of 2185 MHz (6 samples)
[2025-10-12 16:41:21] 2025-10-12 20:40:48,842 | INFO     | ..............................
[2025-10-12 16:41:21] 2025-10-12 20:40:48,842 | INFO     | . Timing measurements:
[2025-10-12 16:41:21] 2025-10-12 20:40:48,842 | INFO     | . get job = 0 s
[2025-10-12 16:41:21] 2025-10-12 20:40:48,842 | INFO     | . initial setup = 2 s
[2025-10-12 16:41:21] 2025-10-12 20:40:48,843 | INFO     | . payload setup = 6 s
[2025-10-12 16:41:21] 2025-10-12 20:40:48,843 | INFO     | . stage-in = 0 s
[2025-10-12 16:41:21] 2025-10-12 20:40:48,843 | INFO     | . payload execution = 3971 s
[2025-10-12 16:41:21] 2025-10-12 20:40:48,843 | INFO     | . stage-out = 0 s
[2025-10-12 16:41:21] 2025-10-12 20:40:48,843 | INFO     | . log creation = 0 s
[2025-10-12 16:41:21] 2025-10-12 20:40:48,843 | INFO     | ..............................
[2025-10-12 16:41:21] 2025-10-12 20:40:48,918 | INFO     | 
[2025-10-12 16:41:21] 2025-10-12 20:40:48,918 | INFO     | job summary report
[2025-10-12 16:41:21] 2025-10-12 20:40:48,919 | INFO     | --------------------------------------------------
[2025-10-12 16:41:21] 2025-10-12 20:40:48,919 | INFO     | PanDA job id: 6840225908
[2025-10-12 16:41:21] 2025-10-12 20:40:48,919 | INFO     | task id: 46676269
[2025-10-12 16:41:21] 2025-10-12 20:40:48,919 | INFO     | errors: (none)
[2025-10-12 16:41:21] 2025-10-12 20:40:48,919 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 16:41:21] 2025-10-12 20:40:48,919 | INFO     | pilot state: finished 
[2025-10-12 16:41:21] 2025-10-12 20:40:48,920 | INFO     | transexitcode: 0
[2025-10-12 16:41:21] 2025-10-12 20:40:48,920 | INFO     | exeerrorcode: 0
[2025-10-12 16:41:21] 2025-10-12 20:40:48,920 | INFO     | exeerrordiag: 
[2025-10-12 16:41:21] 2025-10-12 20:40:48,920 | INFO     | exitcode: 0
[2025-10-12 16:41:21] 2025-10-12 20:40:48,920 | INFO     | exitmsg: OK
[2025-10-12 16:41:21] 2025-10-12 20:40:48,920 | INFO     | cpuconsumptiontime: 42253 s
[2025-10-12 16:41:21] 2025-10-12 20:40:48,921 | INFO     | nevents: 400
[2025-10-12 16:41:21] 2025-10-12 20:40:48,921 | INFO     | neventsw: 0
[2025-10-12 16:41:21] 2025-10-12 20:40:48,921 | INFO     | pid: 27994
[2025-10-12 16:41:21] 2025-10-12 20:40:48,921 | INFO     | pgrp: 27994
[2025-10-12 16:41:21] 2025-10-12 20:40:48,921 | INFO     | corecount: 12
[2025-10-12 16:41:21] 2025-10-12 20:40:48,921 | INFO     | event service: False
[2025-10-12 16:41:21] 2025-10-12 20:40:48,921 | INFO     | sizes: {0: 2348806, 5: 2349068, 11: 2349124, 3981: 2374937, 3982: 2383991, 3989: 2384129}
[2025-10-12 16:41:21] 2025-10-12 20:40:48,922 | INFO     | --------------------------------------------------
[2025-10-12 16:41:21] 2025-10-12 20:40:48,922 | INFO     | 
[2025-10-12 16:41:21] 2025-10-12 20:40:48,922 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 16:41:21] 2025-10-12 20:40:48,944 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 16:41:21] 2025-10-12 20:40:48,945 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 16:41:21] 2025-10-12 20:40:48,945 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 16:41:21] 2025-10-12 20:40:48,945 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 16:41:21] 2025-10-12 20:40:48,945 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 16:41:21] 2025-10-12 20:40:48,946 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 16:41:21] 2025-10-12 20:40:48,946 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 16:41:21] 2025-10-12 20:40:48,946 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 16:41:21] 2025-10-12 20:40:48,946 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 16:41:21] 2025-10-12 20:40:48,946 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 16:41:21] 2025-10-12 20:40:48,946 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 16:41:21] 2025-10-12 20:40:48,946 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 16:41:21] 2025-10-12 20:40:48,947 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 16:41:21] 2025-10-12 20:40:48,947 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 16:41:21] 2025-10-12 20:40:48,947 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 16:41:21] 2025-10-12 20:40:48,947 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 16:41:21] 2025-10-12 20:40:48,947 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 16:41:21] 2025-10-12 20:40:48,947 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 16:41:21] 2025-10-12 20:40:48,948 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 16:41:21] 2025-10-12 20:40:48,948 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 16:41:21] 2025-10-12 20:40:48,948 | INFO     | job 6840225908 has completed (purged errors)
[2025-10-12 16:41:21] 2025-10-12 20:40:48,948 | INFO     | overall cleanup function is called
[2025-10-12 16:41:21] 2025-10-12 20:40:49,954 | INFO     | --- collectZombieJob: --- 10, [27994]
[2025-10-12 16:41:21] 2025-10-12 20:40:49,954 | INFO     | zombie collector waiting for pid 27994
[2025-10-12 16:41:21] 2025-10-12 20:40:49,954 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 16:41:21] 2025-10-12 20:40:49,954 | INFO     | collected zombie processes
[2025-10-12 16:41:21] 2025-10-12 20:40:49,954 | INFO     | will attempt to kill all subprocesses of pid=27994
[2025-10-12 16:41:21] 2025-10-12 20:40:50,043 | INFO     | process IDs to be killed: [27994] (in reverse order)
[2025-10-12 16:41:21] 2025-10-12 20:40:50,093 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 16:41:21] 2025-10-12 20:40:50,093 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 16:41:21] 2025-10-12 20:40:50,097 | INFO     | did not find any defunct processes belonging to 27994
[2025-10-12 16:41:21] 2025-10-12 20:40:50,100 | INFO     | did not find any defunct processes belonging to 27994
[2025-10-12 16:41:21] 2025-10-12 20:40:50,100 | INFO     | ready for new job
[2025-10-12 16:41:21] 2025-10-12 20:40:50,101 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 16:41:21] 2025-10-12 20:40:50,102 | INFO     | ***************************************
[2025-10-12 16:41:21] 2025-10-12 20:40:50,102 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 16:41:21] 2025-10-12 20:40:50,102 | INFO     | ***************************************
[2025-10-12 16:41:21] 2025-10-12 20:40:50,102 | INFO     | 
[2025-10-12 16:41:21] 2025-10-12 20:40:50,103 | INFO     | architecture information:
[2025-10-12 16:41:21] 2025-10-12 20:40:50,103 | INFO     | executing command: cat /etc/os-release
[2025-10-12 16:41:21] 2025-10-12 20:40:50,120 | INFO     | cat /etc/os-release:
[2025-10-12 16:41:21] NAME="CentOS Linux"
[2025-10-12 16:41:21] VERSION="7 (Core)"
[2025-10-12 16:41:21] ID="centos"
[2025-10-12 16:41:21] ID_LIKE="rhel fedora"
[2025-10-12 16:41:21] VERSION_ID="7"
[2025-10-12 16:41:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 16:41:21] ANSI_COLOR="0;31"
[2025-10-12 16:41:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 16:41:21] HOME_URL="https://www.centos.org/"
[2025-10-12 16:41:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 16:41:21] 
[2025-10-12 16:41:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 16:41:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 16:41:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 16:41:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 16:41:21] 
[2025-10-12 16:41:21] 2025-10-12 20:40:50,120 | INFO     | ***************************************
[2025-10-12 16:41:21] 2025-10-12 20:40:50,623 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 16:41:21] 2025-10-12 20:40:50,640 | INFO     | sufficient remaining disk space (18582863872 B)
[2025-10-12 16:41:21] 2025-10-12 20:40:50,640 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 16:41:21] 2025-10-12 20:40:50,641 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 16:41:21] 2025-10-12 20:40:50,641 | INFO     | update_server=False
[2025-10-12 16:41:21] 2025-10-12 20:40:50,641 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 16:41:21] 2025-10-12 20:40:50,641 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:41:21] 2025-10-12 20:40:50,642 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 16:41:21] 2025-10-12 20:40:50,642 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:41:21] 2025-10-12 20:40:50,642 | INFO     | aborting loop
[2025-10-12 16:41:21] 2025-10-12 20:40:50,910 | INFO     | all data control threads have been joined
[2025-10-12 16:41:21] 2025-10-12 20:40:51,200 | INFO     | all payload control threads have been joined
[2025-10-12 16:41:21] 2025-10-12 20:40:51,401 | INFO     | all job control threads have been joined
[2025-10-12 16:41:21] 2025-10-12 20:40:51,647 | INFO     | [job] retrieve thread has finished
[2025-10-12 16:41:21] 2025-10-12 20:40:51,648 | INFO     | [job] queue monitor thread has finished
[2025-10-12 16:41:21] 2025-10-12 20:40:51,649 | INFO     | [job] job monitor thread has finished
[2025-10-12 16:41:21] 2025-10-12 20:40:51,915 | INFO     | [data] control thread has finished
[2025-10-12 16:41:21] 2025-10-12 20:40:52,205 | INFO     | [payload] control thread has finished
[2025-10-12 16:41:21] 2025-10-12 20:40:52,232 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 16:41:21] 2025-10-12 20:40:52,271 | INFO     | [job] validate thread has finished
[2025-10-12 16:41:21] 2025-10-12 20:40:52,300 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 16:41:21] 2025-10-12 20:40:52,353 | INFO     | [payload] failed_post thread has finished
[2025-10-12 16:41:21] 2025-10-12 20:40:52,407 | INFO     | [job] control thread has finished
[2025-10-12 16:41:21] 2025-10-12 20:40:52,643 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 16:41:21] 2025-10-12 20:40:52,648 | INFO     | [data] copytool_out thread has finished
[2025-10-12 16:41:21] 2025-10-12 20:40:52,663 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 16:41:21] 2025-10-12 20:40:53,074 | INFO     | [data] copytool_in thread has finished
[2025-10-12 16:41:21] 2025-10-12 20:40:53,083 | INFO     | [payload] validate_post thread has finished
[2025-10-12 16:41:21] 2025-10-12 20:40:56,238 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 16:41:21] 2025-10-12 20:41:01,242 | INFO     | job.realtimelogging is not enabled
[2025-10-12 16:41:21] 2025-10-12 20:41:02,246 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 16:41:21] 2025-10-12 20:41:09,231 | INFO     | [monitor] cgroup control has ended
[2025-10-12 16:41:21] 2025-10-12 20:41:10,733 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140366236874560)>', '<ExcThread(monitor, started 140365923325696)>']
[2025-10-12 16:41:21] 2025-10-12 20:41:15,759 | INFO     | all workflow threads have been joined
[2025-10-12 16:41:21] 2025-10-12 20:41:15,759 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 16:41:21] 2025-10-12 20:41:15,759 | INFO     | traces error code: 0
[2025-10-12 16:41:21] 2025-10-12 20:41:15,760 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 16:41:21] 2025-10-12 20:41:21,459 | INFO     | PID=21520 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 16:41:21] 2025-10-12 20:41:21,460 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 16:41:21] 2025-10-12 20:41:21,460 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 16:41:21] 2025-10-12 20:41:21,460 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 16:41:21] 2025-10-12 20:41:21,461 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 16:41:21] 2025-10-12 20:41:21,461 | INFO     | [monitor] control thread has ended
[2025-10-12 16:41:21] 2025-10-12 20:41:21,552 [wrapper] ==== pilot stdout END ====
[2025-10-12 16:41:21] 2025-10-12 20:41:21,555 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 16:41:21] 2025-10-12 20:41:21,559 [wrapper] pilotpid: 21520
[2025-10-12 16:41:21] 2025-10-12 20:41:21,563 [wrapper] Pilot exit status: 0
[2025-10-12 16:41:21] 2025-10-12 20:41:21,578 [wrapper] pandaids: 6840225908
[2025-10-12 16:41:21] 2025-10-12 20:41:21,619 [wrapper] cleanup supervisor_pilot 25797 21521
[2025-10-12 16:41:21] 2025-10-12 20:41:21,623 [wrapper] Test setup, not cleaning
[2025-10-12 16:41:21] 2025-10-12 20:41:21,626 [wrapper] apfmon messages muted
[2025-10-12 16:41:21] 2025-10-12 20:41:21,631 [wrapper] ==== wrapper stdout END ====
[2025-10-12 16:41:21] 2025-10-12 20:41:21,634 [wrapper] ==== wrapper stderr END ====
[2025-10-12 16:41:21]  *** Error codes and diagnostics ***
[2025-10-12 16:41:21]     "exeErrorCode": 0,
[2025-10-12 16:41:21]     "exeErrorDiag": "",
[2025-10-12 16:41:21]     "pilotErrorCode": 0,
[2025-10-12 16:41:21]     "pilotErrorDiag": "",
[2025-10-12 16:41:21]  *** Listing of results directory ***
[2025-10-12 16:41:21] total 415448
[2025-10-12 16:41:21] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 11:00 pilot3.tar.gz
[2025-10-12 16:41:21] -rwx------ 1 boincer umatlas     36292 Oct 12 11:59 runpilot2-wrapper.sh
[2025-10-12 16:41:21] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 11:59 queuedata.json
[2025-10-12 16:41:21] -rw-r--r-- 1 boincer umatlas       100 Oct 12 15:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 16:41:21] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 15:33 run_atlas
[2025-10-12 16:41:21] -rw-r--r-- 1 boincer umatlas       105 Oct 12 15:33 job.xml
[2025-10-12 16:41:21] -rw-r--r-- 2 boincer umatlas 219778533 Oct 12 15:33 EVNT.46676267._004600.pool.root.1
[2025-10-12 16:41:21] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 15:33 start_atlas.sh
[2025-10-12 16:41:21] drwxrwx--x 2 boincer umatlas      4096 Oct 12 15:33 shared
[2025-10-12 16:41:21] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 15:33 input.tar.gz
[2025-10-12 16:41:21] -rw-r--r-- 1 boincer umatlas         0 Oct 12 15:33 boinc_lockfile
[2025-10-12 16:41:21] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 15:33 pandaJob.out
[2025-10-12 16:41:21] -rw------- 1 boincer umatlas    975536 Oct 12 15:34 agis_schedconf.cvmfs.json
[2025-10-12 16:41:21] -rw------- 1 boincer umatlas   1560580 Oct 12 15:34 agis_ddmendpoints.agis.ALL.json
[2025-10-12 16:41:21] drwx------ 5 boincer umatlas      4096 Oct 12 15:34 pilot3
[2025-10-12 16:41:21] -rw-r--r-- 1 boincer umatlas      5954 Oct 12 16:38 init_data.xml
[2025-10-12 16:41:21] -rw-r--r-- 1 boincer umatlas       530 Oct 12 16:40 boinc_task_state.xml
[2025-10-12 16:41:21] -rw------- 1 boincer umatlas 199820422 Oct 12 16:40 HITS.46676269._082948.pool.root.1
[2025-10-12 16:41:21] -rw------- 1 boincer umatlas      1050 Oct 12 16:40 memory_monitor_summary.json
[2025-10-12 16:41:21] -rw------- 1 boincer umatlas    372079 Oct 12 16:40 log.46676269._082948.job.log.tgz.1
[2025-10-12 16:41:21] -rw------- 1 boincer umatlas      7852 Oct 12 16:40 heartbeat.json
[2025-10-12 16:41:21] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 16:41 boinc_mmap_file
[2025-10-12 16:41:21] -rw-r--r-- 1 boincer umatlas        27 Oct 12 16:41 wrapper_checkpoint.txt
[2025-10-12 16:41:21] -rw------- 1 boincer umatlas        95 Oct 12 16:41 pilot_heartbeat.json
[2025-10-12 16:41:21] -rw------- 1 boincer umatlas       745 Oct 12 16:41 pilotlog.txt
[2025-10-12 16:41:21] -rw------- 1 boincer umatlas    587290 Oct 12 16:41 log.46676269._082948.job.log.1
[2025-10-12 16:41:21] -rw------- 1 boincer umatlas       357 Oct 12 16:41 output.list
[2025-10-12 16:41:21] -rw-r--r-- 1 boincer umatlas       620 Oct 12 16:41 runtime_log
[2025-10-12 16:41:21] -rw------- 1 boincer umatlas    983040 Oct 12 16:41 result.tar.gz
[2025-10-12 16:41:21] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 16:41 runtime_log.err
[2025-10-12 16:41:21] -rw------- 1 boincer umatlas       659 Oct 12 16:41 qLWLDmWeDS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmhXkNDmUqJTEo.diag
[2025-10-12 16:41:21] -rw-r--r-- 1 boincer umatlas     21975 Oct 12 16:41 stderr.txt
[2025-10-12 16:41:21] HITS file was successfully produced:
[2025-10-12 16:41:21] -rw------- 1 boincer umatlas 199820422 Oct 12 16:40 shared/HITS.pool.root.1
[2025-10-12 16:41:21]  *** Contents of shared directory: ***
[2025-10-12 16:41:21] total 411308
[2025-10-12 16:41:21] -rw-r--r-- 2 boincer umatlas 219778533 Oct 12 15:33 ATLAS.root_0
[2025-10-12 16:41:21] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 15:33 start_atlas.sh
[2025-10-12 16:41:21] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 15:33 input.tar.gz
[2025-10-12 16:41:21] -rw------- 1 boincer umatlas 199820422 Oct 12 16:40 HITS.pool.root.1
[2025-10-12 16:41:21] -rw------- 1 boincer umatlas    983040 Oct 12 16:41 result.tar.gz
16:41:23 (17847): run_atlas exited; CPU time 42247.409766
16:41:23 (17847): called boinc_finish(0)

</stderr_txt>
]]>

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