Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:18:54 (9919): wrapper (7.7.26015): starting
15:18:54 (9919): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 15:18:54] Arguments: --nthreads 8
[2025-10-12 15:18:54] Threads: 8
[2025-10-12 15:18:54] Checking for CVMFS
[2025-10-12 15:18:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 15:18:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 15:18:54] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 15:18:55] /usr/bin/cvmfs_config: line 944: cd: /cvmfs/ligo.storage.igwn.org: Permission denied
[2025-10-12 15:18:55] 
[2025-10-12 15:18:55] CVMFS is ok
[2025-10-12 15:18:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 15:18:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 15:18:55] Further information can be found at the LHC@home message board.
[2025-10-12 15:18:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 15:18:55] Checking for apptainer binary...
[2025-10-12 15:18:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 15:18:55] Running /usr/bin/apptainer --version
[2025-10-12 15:18:55] apptainer version 1.3.2-1.el7
[2025-10-12 15:18:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 15:18:56] c-9-34.aglt2.org
[2025-10-12 15:18:56] apptainer works
[2025-10-12 15:18:56] Set ATHENA_PROC_NUMBER=8
[2025-10-12 15:18:56] Set ATHENA_CORE_NUMBER=8
[2025-10-12 15:18:56] Starting ATLAS job with PandaID=6840390002
[2025-10-12 15:18:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 18:01:29]  *** The last 200 lines of the pilot log: ***
[2025-10-12 18:01:29] 2025-10-12 22:00:31,102 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 18:01:29] 2025-10-12 22:00:31,107 | INFO     | fitting pss+swap vs Time
[2025-10-12 18:01:29] 2025-10-12 22:00:31,108 | INFO     | sum of square deviations: 1246386160.0
[2025-10-12 18:01:29] 2025-10-12 22:00:31,109 | INFO     | sum of deviations: 10481468777.000006
[2025-10-12 18:01:29] 2025-10-12 22:00:31,109 | INFO     | mean x: 1760301592.0
[2025-10-12 18:01:29] 2025-10-12 22:00:31,109 | INFO     | mean y: 2446861.4088050313
[2025-10-12 18:01:29] 2025-10-12 22:00:31,109 | INFO     | -- intersect: -14800787294.08872
[2025-10-12 18:01:29] 2025-10-12 22:00:31,109 | INFO     | intersect: -14800787294.08872
[2025-10-12 18:01:29] 2025-10-12 22:00:31,110 | INFO     | chi2: 2.121815964545137
[2025-10-12 18:01:29] 2025-10-12 22:00:31,110 | INFO     | sum of square deviations: 1132458442.5
[2025-10-12 18:01:29] 2025-10-12 22:00:31,111 | INFO     | sum of deviations: 20633036438.999996
[2025-10-12 18:01:29] 2025-10-12 22:00:31,111 | INFO     | mean x: 1760301439.5
[2025-10-12 18:01:29] 2025-10-12 22:00:31,112 | INFO     | mean y: 2460084.1948051946
[2025-10-12 18:01:29] 2025-10-12 22:00:31,112 | INFO     | -- intersect: -32069678178.68688
[2025-10-12 18:01:29] 2025-10-12 22:00:31,112 | INFO     | intersect: -32069678178.68688
[2025-10-12 18:01:29] 2025-10-12 22:00:31,112 | INFO     | chi2: 1.3031477731312013
[2025-10-12 18:01:29] 2025-10-12 22:00:31,112 | INFO     | current chi2=1.3031477731312013 (change=38.583374104711154 %)
[2025-10-12 18:01:29] 2025-10-12 22:00:31,113 | INFO     | sum of square deviations: 1025693650.0
[2025-10-12 18:01:29] 2025-10-12 22:00:31,114 | INFO     | sum of deviations: 19867443738.99999
[2025-10-12 18:01:29] 2025-10-12 22:00:31,114 | INFO     | mean x: 1760301287.0
[2025-10-12 18:01:29] 2025-10-12 22:00:31,114 | INFO     | mean y: 2458990.288590604
[2025-10-12 18:01:29] 2025-10-12 22:00:31,114 | INFO     | -- intersect: -34094161168.334576
[2025-10-12 18:01:29] 2025-10-12 22:00:31,115 | INFO     | intersect: -34094161168.334576
[2025-10-12 18:01:29] 2025-10-12 22:00:31,115 | INFO     | chi2: 1.3042794894580556
[2025-10-12 18:01:29] 2025-10-12 22:00:31,115 | INFO     | current chi2=1.3042794894580556 (change=-0.08684481915162887 %)
[2025-10-12 18:01:29] 2025-10-12 22:00:31,115 | INFO     | time since job start (9684s) is within the limit (172800.0s)
[2025-10-12 18:01:29] 2025-10-12 22:00:31,115 | INFO     | right removable region: 148
[2025-10-12 18:01:29] 2025-10-12 22:00:31,116 | INFO     | sum of square deviations: 1132458442.5
[2025-10-12 18:01:29] 2025-10-12 22:00:31,117 | INFO     | sum of deviations: -10046259641.0
[2025-10-12 18:01:29] 2025-10-12 22:00:31,117 | INFO     | mean x: 1760301744.5
[2025-10-12 18:01:29] 2025-10-12 22:00:31,117 | INFO     | mean y: 2473885.4285714286
[2025-10-12 18:01:29] 2025-10-12 22:00:31,117 | INFO     | -- intersect: 15618453870.276665
[2025-10-12 18:01:29] 2025-10-12 22:00:31,118 | INFO     | intersect: 15618453870.276665
[2025-10-12 18:01:29] 2025-10-12 22:00:31,118 | INFO     | chi2: 0.8725126493570424
[2025-10-12 18:01:29] 2025-10-12 22:00:31,118 | INFO     | current chi2=0.8725126493570424 (change=58.87896669944762 %)
[2025-10-12 18:01:29] 2025-10-12 22:00:31,119 | INFO     | sum of square deviations: 1025693650.0
[2025-10-12 18:01:29] 2025-10-12 22:00:31,119 | INFO     | sum of deviations: -8091661285.000001
[2025-10-12 18:01:29] 2025-10-12 22:00:31,120 | INFO     | mean x: 1760301897.0
[2025-10-12 18:01:29] 2025-10-12 22:00:31,120 | INFO     | mean y: 2471017.375838926
[2025-10-12 18:01:29] 2025-10-12 22:00:31,120 | INFO     | -- intersect: 13889431036.93622
[2025-10-12 18:01:29] 2025-10-12 22:00:31,120 | INFO     | intersect: 13889431036.93622
[2025-10-12 18:01:29] 2025-10-12 22:00:31,120 | INFO     | chi2: 0.8541858613649008
[2025-10-12 18:01:29] 2025-10-12 22:00:31,121 | INFO     | current chi2=0.8541858613649008 (change=2.100461008289871 %)
[2025-10-12 18:01:29] 2025-10-12 22:00:31,121 | INFO     | left removable region: 20
[2025-10-12 18:01:29] 2025-10-12 22:00:31,121 | INFO     | sum of square deviations: 650252192.0
[2025-10-12 18:01:29] 2025-10-12 22:00:31,122 | INFO     | sum of deviations: 1333606369.5
[2025-10-12 18:01:29] 2025-10-12 22:00:31,122 | INFO     | mean x: 1760301866.5
[2025-10-12 18:01:29] 2025-10-12 22:00:31,122 | INFO     | mean y: 2486672.0234375
[2025-10-12 18:01:29] 2025-10-12 22:00:31,123 | INFO     | -- intersect: -3607727657.5687633
[2025-10-12 18:01:29] 2025-10-12 22:00:31,123 | INFO     | intersect: -3607727657.5687633
[2025-10-12 18:01:29] 2025-10-12 22:00:31,123 | INFO     | chi2: 5.6262100784712415e-05
[2025-10-12 18:01:29] 2025-10-12 22:00:31,123 | INFO     | -- intersect: -3607727657.5687633
[2025-10-12 18:01:29] 2025-10-12 22:00:31,123 | INFO     | current memory leak: 2.05 B/s (using 128 data points, chi2=0.00)
[2025-10-12 18:01:29] 2025-10-12 22:00:31,124 | INFO     | could have reported an average CPU frequency of 2999 MHz (9 samples)
[2025-10-12 18:01:29] 2025-10-12 22:00:31,124 | INFO     | ..............................
[2025-10-12 18:01:29] 2025-10-12 22:00:31,124 | INFO     | . Timing measurements:
[2025-10-12 18:01:29] 2025-10-12 22:00:31,124 | INFO     | . get job = 0 s
[2025-10-12 18:01:29] 2025-10-12 22:00:31,125 | INFO     | . initial setup = 2 s
[2025-10-12 18:01:29] 2025-10-12 22:00:31,125 | INFO     | . payload setup = 4 s
[2025-10-12 18:01:29] 2025-10-12 22:00:31,125 | INFO     | . stage-in = 0 s
[2025-10-12 18:01:29] 2025-10-12 22:00:31,125 | INFO     | . payload execution = 9653 s
[2025-10-12 18:01:29] 2025-10-12 22:00:31,125 | INFO     | . stage-out = 0 s
[2025-10-12 18:01:29] 2025-10-12 22:00:31,125 | INFO     | . log creation = 0 s
[2025-10-12 18:01:29] 2025-10-12 22:00:31,125 | INFO     | ..............................
[2025-10-12 18:01:29] 2025-10-12 22:00:31,531 | INFO     | 
[2025-10-12 18:01:29] 2025-10-12 22:00:31,531 | INFO     | job summary report
[2025-10-12 18:01:29] 2025-10-12 22:00:31,531 | INFO     | --------------------------------------------------
[2025-10-12 18:01:29] 2025-10-12 22:00:31,531 | INFO     | PanDA job id: 6840390002
[2025-10-12 18:01:29] 2025-10-12 22:00:31,532 | INFO     | task id: 46676269
[2025-10-12 18:01:29] 2025-10-12 22:00:31,532 | INFO     | errors: (none)
[2025-10-12 18:01:29] 2025-10-12 22:00:31,532 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 18:01:29] 2025-10-12 22:00:31,532 | INFO     | pilot state: finished 
[2025-10-12 18:01:29] 2025-10-12 22:00:31,532 | INFO     | transexitcode: 0
[2025-10-12 18:01:29] 2025-10-12 22:00:31,532 | INFO     | exeerrorcode: 0
[2025-10-12 18:01:29] 2025-10-12 22:00:31,533 | INFO     | exeerrordiag: 
[2025-10-12 18:01:29] 2025-10-12 22:00:31,533 | INFO     | exitcode: 0
[2025-10-12 18:01:29] 2025-10-12 22:00:31,533 | INFO     | exitmsg: OK
[2025-10-12 18:01:29] 2025-10-12 22:00:31,533 | INFO     | cpuconsumptiontime: 72483 s
[2025-10-12 18:01:29] 2025-10-12 22:00:31,533 | INFO     | nevents: 400
[2025-10-12 18:01:29] 2025-10-12 22:00:31,533 | INFO     | neventsw: 0
[2025-10-12 18:01:29] 2025-10-12 22:00:31,533 | INFO     | pid: 21326
[2025-10-12 18:01:29] 2025-10-12 22:00:31,534 | INFO     | pgrp: 21326
[2025-10-12 18:01:29] 2025-10-12 22:00:31,534 | INFO     | corecount: 8
[2025-10-12 18:01:29] 2025-10-12 22:00:31,534 | INFO     | event service: False
[2025-10-12 18:01:29] 2025-10-12 22:00:31,534 | INFO     | sizes: {0: 2347979, 1: 2348835, 5: 2349097, 12: 2349153, 9662: 2377717, 9663: 2386715, 9664: 2386899, 9669: 2387157}
[2025-10-12 18:01:29] 2025-10-12 22:00:31,534 | INFO     | --------------------------------------------------
[2025-10-12 18:01:29] 2025-10-12 22:00:31,534 | INFO     | 
[2025-10-12 18:01:29] 2025-10-12 22:00:31,535 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-12 18:01:29] 2025-10-12 22:00:31,553 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 18:01:29] 2025-10-12 22:00:31,553 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 18:01:29] 2025-10-12 22:00:31,553 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 18:01:29] 2025-10-12 22:00:31,554 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 18:01:29] 2025-10-12 22:00:31,554 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 18:01:29] 2025-10-12 22:00:31,554 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 18:01:29] 2025-10-12 22:00:31,554 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 18:01:29] 2025-10-12 22:00:31,554 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 18:01:29] 2025-10-12 22:00:31,554 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 18:01:29] 2025-10-12 22:00:31,554 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 18:01:29] 2025-10-12 22:00:31,555 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 18:01:29] 2025-10-12 22:00:31,555 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 18:01:29] 2025-10-12 22:00:31,555 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 18:01:29] 2025-10-12 22:00:31,555 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 18:01:29] 2025-10-12 22:00:31,555 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 18:01:29] 2025-10-12 22:00:31,555 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 18:01:29] 2025-10-12 22:00:31,556 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 18:01:29] 2025-10-12 22:00:31,556 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 18:01:29] 2025-10-12 22:00:31,556 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 18:01:29] 2025-10-12 22:00:31,556 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 18:01:29] 2025-10-12 22:00:31,556 | INFO     | job 6840390002 has completed (purged errors)
[2025-10-12 18:01:29] 2025-10-12 22:00:31,557 | INFO     | overall cleanup function is called
[2025-10-12 18:01:29] 2025-10-12 22:00:32,564 | INFO     | --- collectZombieJob: --- 10, [21326]
[2025-10-12 18:01:29] 2025-10-12 22:00:32,564 | INFO     | zombie collector waiting for pid 21326
[2025-10-12 18:01:29] 2025-10-12 22:00:32,564 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 18:01:29] 2025-10-12 22:00:32,564 | INFO     | collected zombie processes
[2025-10-12 18:01:29] 2025-10-12 22:00:32,565 | INFO     | will attempt to kill all subprocesses of pid=21326
[2025-10-12 18:01:29] 2025-10-12 22:00:32,842 | INFO     | process IDs to be killed: [21326] (in reverse order)
[2025-10-12 18:01:29] 2025-10-12 22:00:32,910 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 18:01:29] 2025-10-12 22:00:32,910 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 18:01:29] 2025-10-12 22:00:32,920 | INFO     | did not find any defunct processes belonging to 21326
[2025-10-12 18:01:29] 2025-10-12 22:00:32,930 | INFO     | did not find any defunct processes belonging to 21326
[2025-10-12 18:01:29] 2025-10-12 22:00:32,930 | INFO     | ready for new job
[2025-10-12 18:01:29] 2025-10-12 22:00:32,930 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 18:01:29] 2025-10-12 22:00:32,932 | INFO     | ***************************************
[2025-10-12 18:01:29] 2025-10-12 22:00:32,932 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 18:01:29] 2025-10-12 22:00:32,932 | INFO     | ***************************************
[2025-10-12 18:01:29] 2025-10-12 22:00:32,932 | INFO     | 
[2025-10-12 18:01:29] 2025-10-12 22:00:32,934 | INFO     | architecture information:
[2025-10-12 18:01:29] 2025-10-12 22:00:32,935 | INFO     | executing command: cat /etc/os-release
[2025-10-12 18:01:29] 2025-10-12 22:00:32,946 | INFO     | cat /etc/os-release:
[2025-10-12 18:01:29] NAME="CentOS Linux"
[2025-10-12 18:01:29] VERSION="7 (Core)"
[2025-10-12 18:01:29] ID="centos"
[2025-10-12 18:01:29] ID_LIKE="rhel fedora"
[2025-10-12 18:01:29] VERSION_ID="7"
[2025-10-12 18:01:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 18:01:29] ANSI_COLOR="0;31"
[2025-10-12 18:01:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 18:01:29] HOME_URL="https://www.centos.org/"
[2025-10-12 18:01:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 18:01:29] 
[2025-10-12 18:01:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 18:01:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 18:01:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 18:01:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 18:01:29] 
[2025-10-12 18:01:29] 2025-10-12 22:00:32,946 | INFO     | ***************************************
[2025-10-12 18:01:29] 2025-10-12 22:00:33,449 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-12 18:01:29] 2025-10-12 22:00:33,466 | INFO     | sufficient remaining disk space (104908980224 B)
[2025-10-12 18:01:29] 2025-10-12 22:00:33,467 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 18:01:29] 2025-10-12 22:00:33,467 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 18:01:29] 2025-10-12 22:00:33,467 | INFO     | update_server=False
[2025-10-12 18:01:29] 2025-10-12 22:00:33,467 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 18:01:29] 2025-10-12 22:00:33,468 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 18:01:29] 2025-10-12 22:00:33,468 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:01:29] 2025-10-12 22:00:33,468 | INFO     | aborting loop
[2025-10-12 18:01:29] 2025-10-12 22:00:33,563 | INFO     | all data control threads have been joined
[2025-10-12 18:01:29] 2025-10-12 22:00:33,943 | INFO     | all job control threads have been joined
[2025-10-12 18:01:29] 2025-10-12 22:00:34,403 | INFO     | all payload control threads have been joined
[2025-10-12 18:01:29] 2025-10-12 22:00:34,472 | INFO     | [job] retrieve thread has finished
[2025-10-12 18:01:29] 2025-10-12 22:00:34,473 | INFO     | [job] job monitor thread has finished
[2025-10-12 18:01:29] 2025-10-12 22:00:34,568 | INFO     | [data] control thread has finished
[2025-10-12 18:01:29] 2025-10-12 22:00:34,755 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 18:01:29] 2025-10-12 22:00:34,798 | INFO     | [job] validate thread has finished
[2025-10-12 18:01:29] 2025-10-12 22:00:34,832 | INFO     | [payload] validate_post thread has finished
[2025-10-12 18:01:29] 2025-10-12 22:00:34,949 | INFO     | [job] control thread has finished
[2025-10-12 18:01:29] 2025-10-12 22:00:35,258 | INFO     | [data] copytool_in thread has finished
[2025-10-12 18:01:29] 2025-10-12 22:00:35,404 | INFO     | [payload] control thread has finished
[2025-10-12 18:01:29] 2025-10-12 22:00:35,474 | INFO     | [data] copytool_out thread has finished
[2025-10-12 18:01:29] 2025-10-12 22:00:35,476 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 18:01:29] 2025-10-12 22:00:35,779 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 18:01:29] 2025-10-12 22:00:35,870 | INFO     | [payload] failed_post thread has finished
[2025-10-12 18:01:29] 2025-10-12 22:00:36,278 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:01:29] 2025-10-12 22:00:36,652 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 18:01:29] 2025-10-12 22:00:37,284 | INFO     | [job] queue monitor thread has finished
[2025-10-12 18:01:29] 2025-10-12 22:00:40,655 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 18:01:29] 2025-10-12 22:00:44,181 | INFO     | job.realtimelogging is not enabled
[2025-10-12 18:01:29] 2025-10-12 22:00:45,187 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 18:01:29] 2025-10-12 22:01:04,553 | INFO     | PID=13734 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 18:01:29] 2025-10-12 22:01:04,554 | INFO     | .. there are 4 such processes running
[2025-10-12 18:01:29] 2025-10-12 22:01:04,555 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 18:01:29] 2025-10-12 22:01:04,555 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 18:01:29] 2025-10-12 22:01:04,555 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 18:01:29] 2025-10-12 22:01:22,744 | INFO     | [monitor] cgroup control has ended
[2025-10-12 18:01:29] 2025-10-12 22:01:23,638 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140122564781888)>', '<ExcThread(monitor, started 140122251040512)>']
[2025-10-12 18:01:29] 2025-10-12 22:01:23,663 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 18:01:29] 2025-10-12 22:01:23,663 | INFO     | [monitor] control thread has ended
[2025-10-12 18:01:29] 2025-10-12 22:01:28,664 | INFO     | all workflow threads have been joined
[2025-10-12 18:01:29] 2025-10-12 22:01:28,664 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 18:01:29] 2025-10-12 22:01:28,665 | INFO     | traces error code: 0
[2025-10-12 18:01:29] 2025-10-12 22:01:28,665 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 18:01:29] 2025-10-12 22:01:28,773 [wrapper] ==== pilot stdout END ====
[2025-10-12 18:01:29] 2025-10-12 22:01:28,775 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 18:01:29] 2025-10-12 22:01:28,780 [wrapper] pilotpid: 13734
[2025-10-12 18:01:29] 2025-10-12 22:01:28,783 [wrapper] Pilot exit status: 0
[2025-10-12 18:01:29] 2025-10-12 22:01:28,821 [wrapper] pandaids: 6840390002
[2025-10-12 18:01:29] 2025-10-12 22:01:28,887 [wrapper] cleanup supervisor_pilot 34767 13735
[2025-10-12 18:01:29] 2025-10-12 22:01:28,890 [wrapper] Test setup, not cleaning
[2025-10-12 18:01:29] 2025-10-12 22:01:28,892 [wrapper] apfmon messages muted
[2025-10-12 18:01:29] 2025-10-12 22:01:28,894 [wrapper] ==== wrapper stdout END ====
[2025-10-12 18:01:29] 2025-10-12 22:01:28,896 [wrapper] ==== wrapper stderr END ====
[2025-10-12 18:01:29]  *** Error codes and diagnostics ***
[2025-10-12 18:01:29]     "exeErrorCode": 0,
[2025-10-12 18:01:29]     "exeErrorDiag": "",
[2025-10-12 18:01:29]     "pilotErrorCode": 0,
[2025-10-12 18:01:29]     "pilotErrorDiag": "",
[2025-10-12 18:01:29]  *** Listing of results directory ***
[2025-10-12 18:01:29] total 414480
[2025-10-12 18:01:29] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 12:01 pilot3.tar.gz
[2025-10-12 18:01:29] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 12:08 queuedata.json
[2025-10-12 18:01:29] -rwx------ 1 boincer umatlas     36292 Oct 12 12:08 runpilot2-wrapper.sh
[2025-10-12 18:01:29] -rw-r--r-- 1 boincer umatlas       100 Oct 12 15:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 18:01:29] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 15:18 run_atlas
[2025-10-12 18:01:29] -rw-r--r-- 1 boincer umatlas       105 Oct 12 15:18 job.xml
[2025-10-12 18:01:29] -rw-r--r-- 2 boincer umatlas 221965084 Oct 12 15:18 EVNT.46676267._001992.pool.root.1
[2025-10-12 18:01:29] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 15:18 start_atlas.sh
[2025-10-12 18:01:29] drwxrwx--x 2 boincer umatlas      4096 Oct 12 15:18 shared
[2025-10-12 18:01:29] -rw-r--r-- 2 boincer umatlas    569688 Oct 12 15:18 input.tar.gz
[2025-10-12 18:01:29] -rw-r--r-- 1 boincer umatlas         0 Oct 12 15:18 boinc_lockfile
[2025-10-12 18:01:29] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 15:18 pandaJob.out
[2025-10-12 18:01:29] -rw------- 1 boincer umatlas    975528 Oct 12 15:19 agis_schedconf.cvmfs.json
[2025-10-12 18:01:29] -rw------- 1 boincer umatlas   1560580 Oct 12 15:19 agis_ddmendpoints.agis.ALL.json
[2025-10-12 18:01:29] drwx------ 5 boincer umatlas      4096 Oct 12 15:19 pilot3
[2025-10-12 18:01:29] -rw-r--r-- 1 boincer umatlas      6035 Oct 12 17:58 init_data.xml
[2025-10-12 18:01:29] -rw------- 1 boincer umatlas 195042126 Oct 12 17:59 HITS.46676269._083128.pool.root.1
[2025-10-12 18:01:29] -rw------- 1 boincer umatlas      1046 Oct 12 18:00 memory_monitor_summary.json
[2025-10-12 18:01:29] -rw-r--r-- 1 boincer umatlas       530 Oct 12 18:00 boinc_task_state.xml
[2025-10-12 18:01:29] -rw------- 1 boincer umatlas    401307 Oct 12 18:00 log.46676269._083128.job.log.tgz.1
[2025-10-12 18:01:29] -rw------- 1 boincer umatlas      7828 Oct 12 18:00 heartbeat.json
[2025-10-12 18:01:29] -rw------- 1 boincer umatlas        95 Oct 12 18:01 pilot_heartbeat.json
[2025-10-12 18:01:29] -rw-r--r-- 1 boincer umatlas        27 Oct 12 18:01 wrapper_checkpoint.txt
[2025-10-12 18:01:29] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 18:01 boinc_mmap_file
[2025-10-12 18:01:29] -rw------- 1 boincer umatlas      4894 Oct 12 18:01 pilotlog.txt
[2025-10-12 18:01:29] -rw------- 1 boincer umatlas   1357862 Oct 12 18:01 log.46676269._083128.job.log.1
[2025-10-12 18:01:29] -rw------- 1 boincer umatlas       357 Oct 12 18:01 output.list
[2025-10-12 18:01:29] -rw-r--r-- 1 boincer umatlas       620 Oct 12 18:01 runtime_log
[2025-10-12 18:01:29] -rw------- 1 boincer umatlas   1781760 Oct 12 18:01 result.tar.gz
[2025-10-12 18:01:29] -rw------- 1 boincer umatlas       657 Oct 12 18:01 uNCLDmWnDS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmkZkNDm52Us5n.diag
[2025-10-12 18:01:29] -rw-r--r-- 1 boincer umatlas      8693 Oct 12 18:01 runtime_log.err
[2025-10-12 18:01:29] -rw-r--r-- 1 boincer umatlas     20615 Oct 12 18:01 stderr.txt
[2025-10-12 18:01:29] HITS file was successfully produced:
[2025-10-12 18:01:29] -rw------- 1 boincer umatlas 195042126 Oct 12 17:59 shared/HITS.pool.root.1
[2025-10-12 18:01:29]  *** Contents of shared directory: ***
[2025-10-12 18:01:29] total 409556
[2025-10-12 18:01:29] -rw-r--r-- 2 boincer umatlas 221965084 Oct 12 15:18 ATLAS.root_0
[2025-10-12 18:01:29] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 15:18 start_atlas.sh
[2025-10-12 18:01:29] -rw-r--r-- 2 boincer umatlas    569688 Oct 12 15:18 input.tar.gz
[2025-10-12 18:01:29] -rw------- 1 boincer umatlas 195042126 Oct 12 17:59 HITS.pool.root.1
[2025-10-12 18:01:29] -rw------- 1 boincer umatlas   1781760 Oct 12 18:01 result.tar.gz
18:01:31 (9919): run_atlas exited; CPU time 72777.377613
18:01:31 (9919): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN