Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:57:10 (3670855): wrapper (7.7.26015): starting
05:57:10 (3670855): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 05:57:10] Arguments: --nthreads 4
[2025-10-13 05:57:10] Threads: 4
[2025-10-13 05:57:10] Checking for CVMFS
[2025-10-13 05:57:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 05:57:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 05:57:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 05:57:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 05:57:11] 2.9.2.0 1854055 5234 101264 151647 3 57 29633771 36864001 0 130560 0 4715005 99.992 178921 900 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 05:57:11] CVMFS is ok
[2025-10-13 05:57:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 05:57:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 05:57:11] Further information can be found at the LHC@home message board.
[2025-10-13 05:57:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 05:57:11] Checking for apptainer binary...
[2025-10-13 05:57:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 05:57:11] Running /usr/bin/apptainer --version
[2025-10-13 05:57:11] apptainer version 1.4.1-1.1
[2025-10-13 05:57:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 05:57:11] thA332a
[2025-10-13 05:57:11] apptainer works
[2025-10-13 05:57:11] Set ATHENA_PROC_NUMBER=4
[2025-10-13 05:57:11] Set ATHENA_CORE_NUMBER=4
[2025-10-13 05:57:11] Starting ATLAS job with PandaID=6840225875
[2025-10-13 05:57:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 07:11:30]  *** The last 200 lines of the pilot log: ***
[2025-10-13 07:11:30] 2025-10-13 05:10:49,476 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 07:11:30] 2025-10-13 05:10:49,476 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 07:11:30] 2025-10-13 05:10:49,476 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 07:11:30] 2025-10-13 05:10:49,476 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 07:11:30] 2025-10-13 05:10:49,476 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 07:11:30] 2025-10-13 05:10:49,476 | INFO     | job 6840225875 has completed (purged errors)
[2025-10-13 07:11:30] 2025-10-13 05:10:49,476 | INFO     | overall cleanup function is called
[2025-10-13 07:11:30] 2025-10-13 05:10:50,483 | INFO     | --- collectZombieJob: --- 10, [3681197]
[2025-10-13 07:11:30] 2025-10-13 05:10:50,483 | INFO     | zombie collector waiting for pid 3681197
[2025-10-13 07:11:30] 2025-10-13 05:10:50,483 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 07:11:30] 2025-10-13 05:10:50,483 | INFO     | collected zombie processes
[2025-10-13 07:11:30] 2025-10-13 05:10:50,483 | INFO     | will attempt to kill all subprocesses of pid=3681197
[2025-10-13 07:11:30] 2025-10-13 05:10:50,528 | INFO     | process IDs to be killed: [3681197] (in reverse order)
[2025-10-13 07:11:30] 2025-10-13 05:10:50,561 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 07:11:30] 2025-10-13 05:10:50,561 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 07:11:30] 2025-10-13 05:10:50,563 | INFO     | did not find any defunct processes belonging to 3681197
[2025-10-13 07:11:30] 2025-10-13 05:10:50,564 | INFO     | did not find any defunct processes belonging to 3681197
[2025-10-13 07:11:30] 2025-10-13 05:10:50,565 | INFO     | ready for new job
[2025-10-13 07:11:30] 2025-10-13 05:10:50,565 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 07:11:30] 2025-10-13 05:10:50,565 | INFO     | ***************************************
[2025-10-13 07:11:30] 2025-10-13 05:10:50,565 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 07:11:30] 2025-10-13 05:10:50,565 | INFO     | ***************************************
[2025-10-13 07:11:30] 2025-10-13 05:10:50,565 | INFO     | 
[2025-10-13 07:11:30] 2025-10-13 05:10:50,566 | INFO     | architecture information:
[2025-10-13 07:11:30] 2025-10-13 05:10:50,566 | INFO     | executing command: cat /etc/os-release
[2025-10-13 07:11:30] 2025-10-13 05:10:50,580 | INFO     | cat /etc/os-release:
[2025-10-13 07:11:30] NAME="CentOS Linux"
[2025-10-13 07:11:30] VERSION="7 (Core)"
[2025-10-13 07:11:30] ID="centos"
[2025-10-13 07:11:30] ID_LIKE="rhel fedora"
[2025-10-13 07:11:30] VERSION_ID="7"
[2025-10-13 07:11:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 07:11:30] ANSI_COLOR="0;31"
[2025-10-13 07:11:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 07:11:30] HOME_URL="https://www.centos.org/"
[2025-10-13 07:11:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 07:11:30] 
[2025-10-13 07:11:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 07:11:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 07:11:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 07:11:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 07:11:30] 
[2025-10-13 07:11:30] 2025-10-13 05:10:50,581 | INFO     | ***************************************
[2025-10-13 07:11:30] 2025-10-13 05:10:51,084 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 07:11:30] 2025-10-13 05:10:51,101 | INFO     | sufficient remaining disk space (329947021312 B)
[2025-10-13 07:11:30] 2025-10-13 05:10:51,101 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 07:11:30] 2025-10-13 05:10:51,101 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 07:11:30] 2025-10-13 05:10:51,102 | INFO     | update_server=False
[2025-10-13 07:11:30] 2025-10-13 05:10:51,102 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 07:11:30] 2025-10-13 05:10:51,102 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:11:30] 2025-10-13 05:10:51,369 | INFO     | all data control threads have been joined
[2025-10-13 07:11:30] 2025-10-13 05:10:51,379 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 07:11:30] 2025-10-13 05:10:51,379 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 07:11:30] 2025-10-13 05:10:51,379 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:11:30] 2025-10-13 05:10:51,379 | INFO     | will abort loop
[2025-10-13 07:11:30] 2025-10-13 05:10:51,432 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 07:11:30] 2025-10-13 05:10:51,633 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 07:11:30] 2025-10-13 05:10:52,107 | INFO     | [job] retrieve thread has finished
[2025-10-13 07:11:30] 2025-10-13 05:10:52,108 | INFO     | [job] queue monitor thread has finished
[2025-10-13 07:11:30] 2025-10-13 05:10:52,375 | INFO     | [data] control thread has finished
[2025-10-13 07:11:30] 2025-10-13 05:10:52,375 | INFO     | all payload control threads have been joined
[2025-10-13 07:11:30] 2025-10-13 05:10:52,385 | INFO     | [job] job monitor thread has finished
[2025-10-13 07:11:30] 2025-10-13 05:10:52,558 | INFO     | [job] validate thread has finished
[2025-10-13 07:11:30] 2025-10-13 05:10:52,666 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 07:11:30] 2025-10-13 05:10:52,695 | INFO     | all job control threads have been joined
[2025-10-13 07:11:30] 2025-10-13 05:10:52,726 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 07:11:30] 2025-10-13 05:10:52,745 | INFO     | [payload] validate_post thread has finished
[2025-10-13 07:11:30] 2025-10-13 05:10:53,256 | INFO     | [data] copytool_in thread has finished
[2025-10-13 07:11:30] 2025-10-13 05:10:53,336 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 07:11:30] 2025-10-13 05:10:53,381 | INFO     | [payload] control thread has finished
[2025-10-13 07:11:30] 2025-10-13 05:10:53,438 | INFO     | [data] copytool_out thread has finished
[2025-10-13 07:11:30] 2025-10-13 05:10:53,690 | INFO     | [payload] failed_post thread has finished
[2025-10-13 07:11:30] 2025-10-13 05:10:53,700 | INFO     | [job] control thread has finished
[2025-10-13 07:11:30] 2025-10-13 05:10:55,641 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 07:11:30] 2025-10-13 05:11:01,739 | INFO     | job.realtimelogging is not enabled
[2025-10-13 07:11:30] 2025-10-13 05:11:02,745 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 07:11:30] 2025-10-13 05:11:21,212 | INFO     | PID=3674642 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 07:11:30] 2025-10-13 05:11:21,213 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 07:11:30] 2025-10-13 05:11:21,213 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 07:11:30] 2025-10-13 05:11:21,213 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 07:11:30] 2025-10-13 05:11:24,708 | INFO     | [monitor] cgroup control has ended
[2025-10-13 07:11:30] 2025-10-13 05:11:25,520 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140430693865280)>', '<ExcThread(monitor, started 140429886465792)>']
[2025-10-13 07:11:30] 2025-10-13 05:11:26,240 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 07:11:30] 2025-10-13 05:11:26,240 | INFO     | [monitor] control thread has ended
[2025-10-13 07:11:30] 2025-10-13 05:11:30,546 | INFO     | all workflow threads have been joined
[2025-10-13 07:11:30] 2025-10-13 05:11:30,546 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 07:11:30] 2025-10-13 05:11:30,546 | INFO     | traces error code: 0
[2025-10-13 07:11:30] 2025-10-13 05:11:30,546 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 07:11:30] 2025-10-13 05:11:30,625 [wrapper] ==== pilot stdout END ====
[2025-10-13 07:11:30] 2025-10-13 05:11:30,629 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 07:11:30] 2025-10-13 05:11:30,633 [wrapper] pilotpid: 3674642
[2025-10-13 07:11:30] 2025-10-13 05:11:30,637 [wrapper] Pilot exit status: 0
[2025-10-13 07:11:30] 2025-10-13 05:11:30,649 [wrapper] pandaids: 6840225875
[2025-10-13 07:11:30] 2025-10-13 05:11:30,671 [wrapper] cleanup supervisor_pilot 3691078 3674643
[2025-10-13 07:11:30] 2025-10-13 05:11:30,675 [wrapper] Test setup, not cleaning
[2025-10-13 07:11:30] 2025-10-13 05:11:30,679 [wrapper] apfmon messages muted
[2025-10-13 07:11:30] 2025-10-13 05:11:30,683 [wrapper] ==== wrapper stdout END ====
[2025-10-13 07:11:30] 2025-10-13 05:11:30,687 [wrapper] ==== wrapper stderr END ====
[2025-10-13 07:11:30]  *** Error codes and diagnostics ***
[2025-10-13 07:11:30]     "exeErrorCode": 0,
[2025-10-13 07:11:30]     "exeErrorDiag": "",
[2025-10-13 07:11:30]     "pilotErrorCode": 0,
[2025-10-13 07:11:30]     "pilotErrorDiag": "",
[2025-10-13 07:11:30]  *** Listing of results directory ***
[2025-10-13 07:11:30] total 415788
[2025-10-13 07:11:30] -rw-r--r-- 1 boinc boinc    557409 Oct 12 17:00 pilot3.tar.gz
[2025-10-13 07:11:30] -rwx------ 1 boinc boinc     36292 Oct 12 17:59 runpilot2-wrapper.sh
[2025-10-13 07:11:30] -rw-r--r-- 1 boinc boinc      5112 Oct 12 17:59 queuedata.json
[2025-10-13 07:11:30] -rw-r--r-- 1 boinc boinc       100 Oct 13 05:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 07:11:30] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 05:57 run_atlas
[2025-10-13 07:11:30] -rw-r--r-- 1 boinc boinc       105 Oct 13 05:57 job.xml
[2025-10-13 07:11:30] -rw-r--r-- 2 boinc boinc 221648246 Oct 13 05:57 EVNT.46676267._004599.pool.root.1
[2025-10-13 07:11:30] -rw-r--r-- 2 boinc boinc    569677 Oct 13 05:57 input.tar.gz
[2025-10-13 07:11:30] -rw-r--r-- 2 boinc boinc     15120 Oct 13 05:57 start_atlas.sh
[2025-10-13 07:11:30] drwxrwx--x 2 boinc boinc      4096 Oct 13 05:57 shared
[2025-10-13 07:11:30] -rw-r--r-- 1 boinc boinc         0 Oct 13 05:57 boinc_setup_complete
[2025-10-13 07:11:30] -rw-r--r-- 1 boinc boinc      6371 Oct 13 05:57 init_data.xml
[2025-10-13 07:11:30] -rw-r--r-- 1 boinc boinc         0 Oct 13 05:57 boinc_lockfile
[2025-10-13 07:11:30] -rw-r--r-- 1 boinc boinc      2547 Oct 13 05:57 pandaJob.out
[2025-10-13 07:11:30] -rw------- 1 boinc boinc    974373 Oct 13 05:57 agis_schedconf.cvmfs.json
[2025-10-13 07:11:30] -rw------- 1 boinc boinc   1560580 Oct 13 05:57 agis_ddmendpoints.agis.ALL.json
[2025-10-13 07:11:30] drwx------ 5 boinc boinc      4096 Oct 13 05:57 pilot3
[2025-10-13 07:11:30] -rw------- 1 boinc boinc 198423273 Oct 13 07:10 HITS.46676269._082915.pool.root.1
[2025-10-13 07:11:30] -rw-r--r-- 1 boinc boinc       529 Oct 13 07:10 boinc_task_state.xml
[2025-10-13 07:11:30] -rw------- 1 boinc boinc      1022 Oct 13 07:10 memory_monitor_summary.json
[2025-10-13 07:11:30] -rw------- 1 boinc boinc    247234 Oct 13 07:10 log.46676269._082915.job.log.tgz.1
[2025-10-13 07:11:30] -rw------- 1 boinc boinc        95 Oct 13 07:10 pilot_heartbeat.json
[2025-10-13 07:11:30] -rw------- 1 boinc boinc      7764 Oct 13 07:10 heartbeat.json
[2025-10-13 07:11:30] -rw-r--r-- 1 boinc boinc      8192 Oct 13 07:11 boinc_mmap_file
[2025-10-13 07:11:30] -rw-r--r-- 1 boinc boinc        27 Oct 13 07:11 wrapper_checkpoint.txt
[2025-10-13 07:11:30] -rw------- 1 boinc boinc      5010 Oct 13 07:11 pilotlog.txt
[2025-10-13 07:11:30] -rw------- 1 boinc boinc    654602 Oct 13 07:11 log.46676269._082915.job.log.1
[2025-10-13 07:11:30] -rw------- 1 boinc boinc       357 Oct 13 07:11 output.list
[2025-10-13 07:11:30] -rw-r--r-- 1 boinc boinc       620 Oct 13 07:11 runtime_log
[2025-10-13 07:11:30] -rw------- 1 boinc boinc    921600 Oct 13 07:11 result.tar.gz
[2025-10-13 07:11:30] -rw-r--r-- 1 boinc boinc      8782 Oct 13 07:11 runtime_log.err
[2025-10-13 07:11:30] -rw------- 1 boinc boinc       659 Oct 13 07:11 f3TLDmWeDS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfXkNDmxZcYnm.diag
[2025-10-13 07:11:30] -rw-r--r-- 1 boinc boinc     11641 Oct 13 07:11 stderr.txt
[2025-10-13 07:11:30] HITS file was successfully produced:
[2025-10-13 07:11:30] -rw------- 1 boinc boinc 198423273 Oct 13 07:10 shared/HITS.pool.root.1
[2025-10-13 07:11:30]  *** Contents of shared directory: ***
[2025-10-13 07:11:30] total 411716
[2025-10-13 07:11:30] -rw-r--r-- 2 boinc boinc 221648246 Oct 13 05:57 ATLAS.root_0
[2025-10-13 07:11:30] -rw-r--r-- 2 boinc boinc    569677 Oct 13 05:57 input.tar.gz
[2025-10-13 07:11:30] -rw-r--r-- 2 boinc boinc     15120 Oct 13 05:57 start_atlas.sh
[2025-10-13 07:11:30] -rw------- 1 boinc boinc 198423273 Oct 13 07:10 HITS.pool.root.1
[2025-10-13 07:11:30] -rw------- 1 boinc boinc    921600 Oct 13 07:11 result.tar.gz
07:11:32 (3670855): run_atlas exited; CPU time 16575.418968
07:11:32 (3670855): called boinc_finish(0)

</stderr_txt>
]]>

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