Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:12:43 (29805): wrapper (7.7.26015): starting
15:12:43 (29805): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 15:12:43] Arguments: --nthreads 8
[2025-10-12 15:12:43] Threads: 8
[2025-10-12 15:12:43] Checking for CVMFS
[2025-10-12 15:12:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 15:12:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 15:12:43] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 15:12:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 15:12:43] 2.11.2.0 2790 6045 71112 151633 2 56 12371488 20275201 1 130560 0 3870779 99.989 208623 34077 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 15:12:43] CVMFS is ok
[2025-10-12 15:12:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 15:12:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 15:12:43] Further information can be found at the LHC@home message board.
[2025-10-12 15:12:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 15:12:43] Checking for apptainer binary...
[2025-10-12 15:12:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 15:12:43] Running /usr/bin/apptainer --version
[2025-10-12 15:12:43] apptainer version 1.3.2-1.el7
[2025-10-12 15:12:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 15:12:45] c-204-12.aglt2.org
[2025-10-12 15:12:45] apptainer works
[2025-10-12 15:12:45] Set ATHENA_PROC_NUMBER=8
[2025-10-12 15:12:45] Set ATHENA_CORE_NUMBER=8
[2025-10-12 15:12:45] Starting ATLAS job with PandaID=6840225455
[2025-10-12 15:12:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:13:20]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:13:20] 2025-10-12 21:12:15,379 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 17:13:20] 2025-10-12 21:12:15,382 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2025-10-12 17:13:20] 2025-10-12 21:12:15,384 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840225455/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:13:20] 2025-10-12 21:12:15,386 | INFO     | extracted standard info from prmon json
[2025-10-12 17:13:20] 2025-10-12 21:12:15,386 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 17:13:20] 2025-10-12 21:12:15,386 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 17:13:20] 2025-10-12 21:12:15,386 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 17:13:20] 2025-10-12 21:12:15,387 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 17:13:20] 2025-10-12 21:12:15,389 | INFO     | fitting pss+swap vs Time
[2025-10-12 17:13:20] 2025-10-12 21:12:15,389 | INFO     | sum of square deviations: 496597218.0
[2025-10-12 17:13:20] 2025-10-12 21:12:15,390 | INFO     | sum of deviations: 10182558529.000002
[2025-10-12 17:13:20] 2025-10-12 21:12:15,390 | INFO     | mean x: 1760299951.0
[2025-10-12 17:13:20] 2025-10-12 21:12:15,390 | INFO     | mean y: 2510154.017094017
[2025-10-12 17:13:20] 2025-10-12 21:12:15,390 | INFO     | -- intersect: -36091846862.00093
[2025-10-12 17:13:20] 2025-10-12 21:12:15,390 | INFO     | intersect: -36091846862.00093
[2025-10-12 17:13:20] 2025-10-12 21:12:15,391 | INFO     | chi2: 1.438165662285711
[2025-10-12 17:13:20] 2025-10-12 21:12:15,391 | INFO     | sum of square deviations: 435610028.0
[2025-10-12 17:13:20] 2025-10-12 21:12:15,392 | INFO     | sum of deviations: 9736531714.0
[2025-10-12 17:13:20] 2025-10-12 21:12:15,392 | INFO     | mean x: 1760299798.5
[2025-10-12 17:13:20] 2025-10-12 21:12:15,392 | INFO     | mean y: 2509038.089285714
[2025-10-12 17:13:20] 2025-10-12 21:12:15,392 | INFO     | -- intersect: -39342808361.81928
[2025-10-12 17:13:20] 2025-10-12 21:12:15,392 | INFO     | intersect: -39342808361.81928
[2025-10-12 17:13:20] 2025-10-12 21:12:15,392 | INFO     | chi2: 1.4408162723465263
[2025-10-12 17:13:20] 2025-10-12 21:12:15,392 | INFO     | current chi2=1.4408162723465263 (change=-0.18430491912889657 %)
[2025-10-12 17:13:20] 2025-10-12 21:12:15,393 | INFO     | right removable region: 111
[2025-10-12 17:13:20] 2025-10-12 21:12:15,393 | INFO     | sum of square deviations: 435610028.0
[2025-10-12 17:13:20] 2025-10-12 21:12:15,393 | INFO     | sum of deviations: -6131659854.000001
[2025-10-12 17:13:20] 2025-10-12 21:12:15,394 | INFO     | mean x: 1760300103.5
[2025-10-12 17:13:20] 2025-10-12 21:12:15,394 | INFO     | mean y: 2550091.5535714286
[2025-10-12 17:13:20] 2025-10-12 21:12:15,394 | INFO     | -- intersect: 24780587285.001736
[2025-10-12 17:13:20] 2025-10-12 21:12:15,394 | INFO     | intersect: 24780587285.001736
[2025-10-12 17:13:20] 2025-10-12 21:12:15,394 | INFO     | chi2: 0.08378754205449566
[2025-10-12 17:13:20] 2025-10-12 21:12:15,394 | INFO     | current chi2=0.08378754205449566 (change=94.17399926505476 %)
[2025-10-12 17:13:20] 2025-10-12 21:12:15,395 | INFO     | sum of square deviations: 379832238.0
[2025-10-12 17:13:20] 2025-10-12 21:12:15,395 | INFO     | sum of deviations: -3831300992.9999995
[2025-10-12 17:13:20] 2025-10-12 21:12:15,395 | INFO     | mean x: 1760300256.0
[2025-10-12 17:13:20] 2025-10-12 21:12:15,395 | INFO     | mean y: 2543683.0654205605
[2025-10-12 17:13:20] 2025-10-12 21:12:15,395 | INFO     | -- intersect: 17758382824.847153
[2025-10-12 17:13:20] 2025-10-12 21:12:15,396 | INFO     | intersect: 17758382824.847153
[2025-10-12 17:13:20] 2025-10-12 21:12:15,396 | INFO     | chi2: 0.06554184852336994
[2025-10-12 17:13:20] 2025-10-12 21:12:15,396 | INFO     | current chi2=0.06554184852336994 (change=21.77614127797026 %)
[2025-10-12 17:13:20] 2025-10-12 21:12:15,396 | INFO     | left removable region: 20
[2025-10-12 17:13:20] 2025-10-12 21:12:15,396 | INFO     | sum of square deviations: 233641590.0
[2025-10-12 17:13:20] 2025-10-12 21:12:15,397 | INFO     | sum of deviations: 1371906043.0
[2025-10-12 17:13:20] 2025-10-12 21:12:15,397 | INFO     | mean x: 1760300378.0
[2025-10-12 17:13:20] 2025-10-12 21:12:15,397 | INFO     | mean y: 2526883.6483516484
[2025-10-12 17:13:20] 2025-10-12 21:12:15,397 | INFO     | -- intersect: -10333675357.02885
[2025-10-12 17:13:20] 2025-10-12 21:12:15,397 | INFO     | intersect: -10333675357.02885
[2025-10-12 17:13:20] 2025-10-12 21:12:15,397 | INFO     | chi2: 0.0004236988487455853
[2025-10-12 17:13:20] 2025-10-12 21:12:15,398 | INFO     | -- intersect: -10333675357.02885
[2025-10-12 17:13:20] 2025-10-12 21:12:15,398 | INFO     | current memory leak: 5.87 B/s (using 91 data points, chi2=0.00)
[2025-10-12 17:13:20] 2025-10-12 21:12:15,398 | INFO     | could have reported an average CPU frequency of 1962 MHz (7 samples)
[2025-10-12 17:13:20] 2025-10-12 21:12:15,398 | INFO     | ..............................
[2025-10-12 17:13:20] 2025-10-12 21:12:15,398 | INFO     | . Timing measurements:
[2025-10-12 17:13:20] 2025-10-12 21:12:15,398 | INFO     | . get job = 0 s
[2025-10-12 17:13:20] 2025-10-12 21:12:15,399 | INFO     | . initial setup = 2 s
[2025-10-12 17:13:20] 2025-10-12 21:12:15,399 | INFO     | . payload setup = 8 s
[2025-10-12 17:13:20] 2025-10-12 21:12:15,399 | INFO     | . stage-in = 0 s
[2025-10-12 17:13:20] 2025-10-12 21:12:15,399 | INFO     | . payload execution = 7116 s
[2025-10-12 17:13:20] 2025-10-12 21:12:15,399 | INFO     | . stage-out = 0 s
[2025-10-12 17:13:20] 2025-10-12 21:12:15,399 | INFO     | . log creation = 0 s
[2025-10-12 17:13:20] 2025-10-12 21:12:15,399 | INFO     | ..............................
[2025-10-12 17:13:20] 2025-10-12 21:12:15,533 | INFO     | 
[2025-10-12 17:13:20] 2025-10-12 21:12:15,533 | INFO     | job summary report
[2025-10-12 17:13:20] 2025-10-12 21:12:15,533 | INFO     | --------------------------------------------------
[2025-10-12 17:13:20] 2025-10-12 21:12:15,534 | INFO     | PanDA job id: 6840225455
[2025-10-12 17:13:20] 2025-10-12 21:12:15,534 | INFO     | task id: 46676269
[2025-10-12 17:13:20] 2025-10-12 21:12:15,534 | INFO     | errors: (none)
[2025-10-12 17:13:20] 2025-10-12 21:12:15,534 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 17:13:20] 2025-10-12 21:12:15,534 | INFO     | pilot state: finished 
[2025-10-12 17:13:20] 2025-10-12 21:12:15,534 | INFO     | transexitcode: 0
[2025-10-12 17:13:20] 2025-10-12 21:12:15,534 | INFO     | exeerrorcode: 0
[2025-10-12 17:13:20] 2025-10-12 21:12:15,534 | INFO     | exeerrordiag: 
[2025-10-12 17:13:20] 2025-10-12 21:12:15,534 | INFO     | exitcode: 0
[2025-10-12 17:13:20] 2025-10-12 21:12:15,535 | INFO     | exitmsg: OK
[2025-10-12 17:13:20] 2025-10-12 21:12:15,535 | INFO     | cpuconsumptiontime: 52649 s
[2025-10-12 17:13:20] 2025-10-12 21:12:15,535 | INFO     | nevents: 400
[2025-10-12 17:13:20] 2025-10-12 21:12:15,535 | INFO     | neventsw: 0
[2025-10-12 17:13:20] 2025-10-12 21:12:15,535 | INFO     | pid: 7783
[2025-10-12 17:13:20] 2025-10-12 21:12:15,535 | INFO     | pgrp: 7783
[2025-10-12 17:13:20] 2025-10-12 21:12:15,535 | INFO     | corecount: 8
[2025-10-12 17:13:20] 2025-10-12 21:12:15,535 | INFO     | event service: False
[2025-10-12 17:13:20] 2025-10-12 21:12:15,535 | INFO     | sizes: {0: 2348686, 1: 2348885, 6: 2349147, 11: 2349175, 7128: 2376428, 7130: 2385610, 7136: 2385748}
[2025-10-12 17:13:20] 2025-10-12 21:12:15,536 | INFO     | --------------------------------------------------
[2025-10-12 17:13:20] 2025-10-12 21:12:15,536 | INFO     | 
[2025-10-12 17:13:20] 2025-10-12 21:12:15,536 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 17:13:20] 2025-10-12 21:12:15,565 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 17:13:20] 2025-10-12 21:12:15,565 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 17:13:20] 2025-10-12 21:12:15,565 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 17:13:20] 2025-10-12 21:12:15,565 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 17:13:20] 2025-10-12 21:12:15,566 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 17:13:20] 2025-10-12 21:12:15,566 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 17:13:20] 2025-10-12 21:12:15,566 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 17:13:20] 2025-10-12 21:12:15,566 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 17:13:20] 2025-10-12 21:12:15,566 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 17:13:20] 2025-10-12 21:12:15,567 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 17:13:20] 2025-10-12 21:12:15,567 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 17:13:20] 2025-10-12 21:12:15,567 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 17:13:20] 2025-10-12 21:12:15,567 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 17:13:20] 2025-10-12 21:12:15,567 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 17:13:20] 2025-10-12 21:12:15,567 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 17:13:20] 2025-10-12 21:12:15,568 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 17:13:20] 2025-10-12 21:12:15,568 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 17:13:20] 2025-10-12 21:12:15,568 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 17:13:20] 2025-10-12 21:12:15,568 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 17:13:20] 2025-10-12 21:12:15,568 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 17:13:20] 2025-10-12 21:12:15,568 | INFO     | job 6840225455 has completed (purged errors)
[2025-10-12 17:13:20] 2025-10-12 21:12:15,569 | INFO     | overall cleanup function is called
[2025-10-12 17:13:20] 2025-10-12 21:12:16,572 | INFO     | --- collectZombieJob: --- 10, [7783]
[2025-10-12 17:13:20] 2025-10-12 21:12:16,573 | INFO     | zombie collector waiting for pid 7783
[2025-10-12 17:13:20] 2025-10-12 21:12:16,573 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 17:13:20] 2025-10-12 21:12:16,573 | INFO     | collected zombie processes
[2025-10-12 17:13:20] 2025-10-12 21:12:16,573 | INFO     | will attempt to kill all subprocesses of pid=7783
[2025-10-12 17:13:20] 2025-10-12 21:12:16,663 | INFO     | process IDs to be killed: [7783] (in reverse order)
[2025-10-12 17:13:20] 2025-10-12 21:12:16,720 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 17:13:20] 2025-10-12 21:12:16,721 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 17:13:20] 2025-10-12 21:12:16,725 | INFO     | did not find any defunct processes belonging to 7783
[2025-10-12 17:13:20] 2025-10-12 21:12:16,728 | INFO     | did not find any defunct processes belonging to 7783
[2025-10-12 17:13:20] 2025-10-12 21:12:16,729 | INFO     | ready for new job
[2025-10-12 17:13:20] 2025-10-12 21:12:16,729 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 17:13:20] 2025-10-12 21:12:16,730 | INFO     | ***************************************
[2025-10-12 17:13:20] 2025-10-12 21:12:16,730 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:13:20] 2025-10-12 21:12:16,730 | INFO     | ***************************************
[2025-10-12 17:13:20] 2025-10-12 21:12:16,731 | INFO     | 
[2025-10-12 17:13:20] 2025-10-12 21:12:16,731 | INFO     | architecture information:
[2025-10-12 17:13:20] 2025-10-12 21:12:16,732 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:13:20] 2025-10-12 21:12:16,750 | INFO     | cat /etc/os-release:
[2025-10-12 17:13:20] NAME="CentOS Linux"
[2025-10-12 17:13:20] VERSION="7 (Core)"
[2025-10-12 17:13:20] ID="centos"
[2025-10-12 17:13:20] ID_LIKE="rhel fedora"
[2025-10-12 17:13:20] VERSION_ID="7"
[2025-10-12 17:13:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:13:20] ANSI_COLOR="0;31"
[2025-10-12 17:13:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:13:20] HOME_URL="https://www.centos.org/"
[2025-10-12 17:13:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:13:20] 
[2025-10-12 17:13:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:13:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:13:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:13:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:13:20] 
[2025-10-12 17:13:20] 2025-10-12 21:12:16,751 | INFO     | ***************************************
[2025-10-12 17:13:20] 2025-10-12 21:12:17,254 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 17:13:20] 2025-10-12 21:12:17,274 | INFO     | sufficient remaining disk space (18580766720 B)
[2025-10-12 17:13:20] 2025-10-12 21:12:17,275 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:13:20] 2025-10-12 21:12:17,275 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:13:20] 2025-10-12 21:12:17,275 | INFO     | update_server=False
[2025-10-12 17:13:20] 2025-10-12 21:12:17,275 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:13:20] 2025-10-12 21:12:17,276 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:13:20] 2025-10-12 21:12:17,641 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:13:20] 2025-10-12 21:12:17,650 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 17:13:20] 2025-10-12 21:12:17,650 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 17:13:20] 2025-10-12 21:12:17,650 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:13:20] 2025-10-12 21:12:17,651 | INFO     | will abort loop
[2025-10-12 17:13:20] 2025-10-12 21:12:18,184 | INFO     | all job control threads have been joined
[2025-10-12 17:13:20] 2025-10-12 21:12:18,257 | INFO     | all payload control threads have been joined
[2025-10-12 17:13:20] 2025-10-12 21:12:18,265 | INFO     | all data control threads have been joined
[2025-10-12 17:13:20] 2025-10-12 21:12:18,276 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:13:20] 2025-10-12 21:12:18,281 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:13:20] 2025-10-12 21:12:18,476 | INFO     | [job] validate thread has finished
[2025-10-12 17:13:20] 2025-10-12 21:12:18,631 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:13:20] 2025-10-12 21:12:18,652 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:13:20] 2025-10-12 21:12:18,947 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:13:20] 2025-10-12 21:12:18,948 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:13:20] 2025-10-12 21:12:18,994 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:13:20] 2025-10-12 21:12:19,131 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:13:20] 2025-10-12 21:12:19,185 | INFO     | [job] control thread has finished
[2025-10-12 17:13:20] 2025-10-12 21:12:19,258 | INFO     | [payload] control thread has finished
[2025-10-12 17:13:20] 2025-10-12 21:12:19,271 | INFO     | [data] control thread has finished
[2025-10-12 17:13:20] 2025-10-12 21:12:19,647 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:13:20] 2025-10-12 21:12:19,857 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:13:20] 2025-10-12 21:12:20,224 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:13:20] 2025-10-12 21:12:24,227 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:13:20] 2025-10-12 21:12:28,193 | INFO     | job.realtimelogging is not enabled
[2025-10-12 17:13:20] 2025-10-12 21:12:29,199 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:13:20] 2025-10-12 21:12:48,120 | INFO     | PID=1033 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 17:13:20] 2025-10-12 21:12:48,121 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:13:20] 2025-10-12 21:12:48,121 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:13:20] 2025-10-12 21:12:48,121 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:13:20] 2025-10-12 21:13:00,336 [wrapper] supervise_pilot (15 min periods counter: 9)
[2025-10-12 17:13:20] 2025-10-12 21:13:13,931 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:13:20] 2025-10-12 21:13:15,298 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139965199779648)>', '<ExcThread(monitor, started 139964209665792)>']
[2025-10-12 17:13:20] 2025-10-12 21:13:16,247 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:13:20] 2025-10-12 21:13:16,247 | INFO     | [monitor] control thread has ended
[2025-10-12 17:13:20] 2025-10-12 21:13:20,307 | INFO     | all workflow threads have been joined
[2025-10-12 17:13:20] 2025-10-12 21:13:20,308 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:13:20] 2025-10-12 21:13:20,308 | INFO     | traces error code: 0
[2025-10-12 17:13:20] 2025-10-12 21:13:20,308 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:13:20] 2025-10-12 21:13:20,416 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:13:20] 2025-10-12 21:13:20,421 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:13:20] 2025-10-12 21:13:20,425 [wrapper] pilotpid: 1033
[2025-10-12 17:13:20] 2025-10-12 21:13:20,430 [wrapper] Pilot exit status: 0
[2025-10-12 17:13:20] 2025-10-12 21:13:20,448 [wrapper] pandaids: 6840225455
[2025-10-12 17:13:20] 2025-10-12 21:13:20,497 [wrapper] cleanup supervisor_pilot  7426 1034
[2025-10-12 17:13:20] 2025-10-12 21:13:20,502 [wrapper] Test setup, not cleaning
[2025-10-12 17:13:20] 2025-10-12 21:13:20,507 [wrapper] apfmon messages muted
[2025-10-12 17:13:20] 2025-10-12 21:13:20,511 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:13:20] 2025-10-12 21:13:20,515 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:13:20]  *** Error codes and diagnostics ***
[2025-10-12 17:13:20]     "exeErrorCode": 0,
[2025-10-12 17:13:20]     "exeErrorDiag": "",
[2025-10-12 17:13:20]     "pilotErrorCode": 0,
[2025-10-12 17:13:20]     "pilotErrorDiag": "",
[2025-10-12 17:13:20]  *** Listing of results directory ***
[2025-10-12 17:13:20] total 412984
[2025-10-12 17:13:20] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 11:00 pilot3.tar.gz
[2025-10-12 17:13:20] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 11:42 queuedata.json
[2025-10-12 17:13:20] -rwx------ 1 boincer umatlas     36292 Oct 12 11:43 runpilot2-wrapper.sh
[2025-10-12 17:13:20] -rw-r--r-- 1 boincer umatlas       100 Oct 12 15:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:13:20] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 15:12 run_atlas
[2025-10-12 17:13:20] -rw-r--r-- 1 boincer umatlas       105 Oct 12 15:12 job.xml
[2025-10-12 17:13:20] -rw-r--r-- 2 boincer umatlas 222078429 Oct 12 15:12 EVNT.46676267._004583.pool.root.1
[2025-10-12 17:13:20] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 15:12 start_atlas.sh
[2025-10-12 17:13:20] drwxrwx--x 2 boincer umatlas      4096 Oct 12 15:12 shared
[2025-10-12 17:13:20] -rw-r--r-- 2 boincer umatlas    569682 Oct 12 15:12 input.tar.gz
[2025-10-12 17:13:20] -rw-r--r-- 1 boincer umatlas         0 Oct 12 15:12 boinc_lockfile
[2025-10-12 17:13:20] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 15:12 pandaJob.out
[2025-10-12 17:13:20] -rw------- 1 boincer umatlas    975528 Oct 12 15:13 agis_schedconf.cvmfs.json
[2025-10-12 17:13:20] -rw------- 1 boincer umatlas   1560580 Oct 12 15:13 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:13:20] drwx------ 5 boincer umatlas      4096 Oct 12 15:13 pilot3
[2025-10-12 17:13:20] -rw------- 1 boincer umatlas 194186127 Oct 12 17:11 HITS.46676269._082522.pool.root.1
[2025-10-12 17:13:20] -rw------- 1 boincer umatlas      1050 Oct 12 17:12 memory_monitor_summary.json
[2025-10-12 17:13:20] -rw-r--r-- 1 boincer umatlas      5910 Oct 12 17:12 init_data.xml
[2025-10-12 17:13:20] -rw-r--r-- 1 boincer umatlas       530 Oct 12 17:12 boinc_task_state.xml
[2025-10-12 17:13:20] -rw------- 1 boincer umatlas    358309 Oct 12 17:12 log.46676269._082522.job.log.tgz.1
[2025-10-12 17:13:20] -rw------- 1 boincer umatlas      7848 Oct 12 17:12 heartbeat.json
[2025-10-12 17:13:20] -rw------- 1 boincer umatlas        95 Oct 12 17:12 pilot_heartbeat.json
[2025-10-12 17:13:20] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 17:13 boinc_mmap_file
[2025-10-12 17:13:20] -rw-r--r-- 1 boincer umatlas        27 Oct 12 17:13 wrapper_checkpoint.txt
[2025-10-12 17:13:20] -rw------- 1 boincer umatlas      5003 Oct 12 17:13 pilotlog.txt
[2025-10-12 17:13:20] -rw------- 1 boincer umatlas   1006566 Oct 12 17:13 log.46676269._082522.job.log.1
[2025-10-12 17:13:20] -rw------- 1 boincer umatlas       357 Oct 12 17:13 output.list
[2025-10-12 17:13:20] -rw-r--r-- 1 boincer umatlas       620 Oct 12 17:13 runtime_log
[2025-10-12 17:13:20] -rw------- 1 boincer umatlas   1382400 Oct 12 17:13 result.tar.gz
[2025-10-12 17:13:20] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 17:13 runtime_log.err
[2025-10-12 17:13:20] -rw------- 1 boincer umatlas       659 Oct 12 17:13 MbHODmVPDS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmAUkNDmfE66cn.diag
[2025-10-12 17:13:20] -rw-r--r-- 1 boincer umatlas     21008 Oct 12 17:13 stderr.txt
[2025-10-12 17:13:20] HITS file was successfully produced:
[2025-10-12 17:13:20] -rw------- 1 boincer umatlas 194186127 Oct 12 17:11 shared/HITS.pool.root.1
[2025-10-12 17:13:20]  *** Contents of shared directory: ***
[2025-10-12 17:13:20] total 408444
[2025-10-12 17:13:20] -rw-r--r-- 2 boincer umatlas 222078429 Oct 12 15:12 ATLAS.root_0
[2025-10-12 17:13:20] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 15:12 start_atlas.sh
[2025-10-12 17:13:20] -rw-r--r-- 2 boincer umatlas    569682 Oct 12 15:12 input.tar.gz
[2025-10-12 17:13:20] -rw------- 1 boincer umatlas 194186127 Oct 12 17:11 HITS.pool.root.1
[2025-10-12 17:13:20] -rw------- 1 boincer umatlas   1382400 Oct 12 17:13 result.tar.gz
17:13:22 (29805): run_atlas exited; CPU time 52645.685588
17:13:22 (29805): called boinc_finish(0)

</stderr_txt>
]]>

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