Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:37:52 (3853491): wrapper (7.7.26015): starting
06:37:52 (3853491): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 06:37:52] Arguments: --nthreads 4
[2025-10-13 06:37:52] Threads: 4
[2025-10-13 06:37:52] Checking for CVMFS
[2025-10-13 06:37:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 06:37:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 06:37:52] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 06:37:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 06:37:53] 2.9.2.0 1822434 5172 95832 151649 3 57 22558901 36864000 0 130560 0 5341661 99.993 181887 731 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 06:37:53] CVMFS is ok
[2025-10-13 06:37:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 06:37:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 06:37:53] Further information can be found at the LHC@home message board.
[2025-10-13 06:37:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 06:37:53] Checking for apptainer binary...
[2025-10-13 06:37:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 06:37:53] Running /usr/bin/apptainer --version
[2025-10-13 06:37:53] apptainer version 1.4.1-1.1
[2025-10-13 06:37:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 06:37:53] thA315b
[2025-10-13 06:37:53] apptainer works
[2025-10-13 06:37:53] Set ATHENA_PROC_NUMBER=4
[2025-10-13 06:37:53] Set ATHENA_CORE_NUMBER=4
[2025-10-13 06:37:53] Starting ATLAS job with PandaID=6840223781
[2025-10-13 06:37:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 07:42:11]  *** The last 200 lines of the pilot log: ***
[2025-10-13 07:42:11] 2025-10-13 05:41:25,728 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 07:42:11] 2025-10-13 05:41:25,728 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 07:42:11] 2025-10-13 05:41:25,728 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 07:42:11] 2025-10-13 05:41:25,728 | INFO     | job 6840223781 has completed (purged errors)
[2025-10-13 07:42:11] 2025-10-13 05:41:25,728 | INFO     | overall cleanup function is called
[2025-10-13 07:42:11] 2025-10-13 05:41:26,735 | INFO     | --- collectZombieJob: --- 10, [3863839]
[2025-10-13 07:42:11] 2025-10-13 05:41:26,735 | INFO     | zombie collector waiting for pid 3863839
[2025-10-13 07:42:11] 2025-10-13 05:41:26,735 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 07:42:11] 2025-10-13 05:41:26,735 | INFO     | collected zombie processes
[2025-10-13 07:42:11] 2025-10-13 05:41:26,735 | INFO     | will attempt to kill all subprocesses of pid=3863839
[2025-10-13 07:42:11] 2025-10-13 05:41:26,781 | INFO     | process IDs to be killed: [3863839] (in reverse order)
[2025-10-13 07:42:11] 2025-10-13 05:41:26,809 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 07:42:11] 2025-10-13 05:41:26,809 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 07:42:11] 2025-10-13 05:41:26,810 | INFO     | did not find any defunct processes belonging to 3863839
[2025-10-13 07:42:11] 2025-10-13 05:41:26,811 | INFO     | did not find any defunct processes belonging to 3863839
[2025-10-13 07:42:11] 2025-10-13 05:41:26,811 | INFO     | ready for new job
[2025-10-13 07:42:11] 2025-10-13 05:41:26,811 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 07:42:11] 2025-10-13 05:41:26,812 | INFO     | ***************************************
[2025-10-13 07:42:11] 2025-10-13 05:41:26,812 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 07:42:11] 2025-10-13 05:41:26,812 | INFO     | ***************************************
[2025-10-13 07:42:11] 2025-10-13 05:41:26,812 | INFO     | 
[2025-10-13 07:42:11] 2025-10-13 05:41:26,813 | INFO     | architecture information:
[2025-10-13 07:42:11] 2025-10-13 05:41:26,813 | INFO     | executing command: cat /etc/os-release
[2025-10-13 07:42:11] 2025-10-13 05:41:26,822 | INFO     | cat /etc/os-release:
[2025-10-13 07:42:11] NAME="CentOS Linux"
[2025-10-13 07:42:11] VERSION="7 (Core)"
[2025-10-13 07:42:11] ID="centos"
[2025-10-13 07:42:11] ID_LIKE="rhel fedora"
[2025-10-13 07:42:11] VERSION_ID="7"
[2025-10-13 07:42:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 07:42:11] ANSI_COLOR="0;31"
[2025-10-13 07:42:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 07:42:11] HOME_URL="https://www.centos.org/"
[2025-10-13 07:42:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 07:42:11] 
[2025-10-13 07:42:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 07:42:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 07:42:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 07:42:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 07:42:11] 
[2025-10-13 07:42:11] 2025-10-13 05:41:26,822 | INFO     | ***************************************
[2025-10-13 07:42:11] 2025-10-13 05:41:27,226 | WARNING  | process 3863839 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 07:42:11] 2025-10-13 05:41:27,257 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 07:42:11] 2025-10-13 05:41:27,295 | INFO     | number of running child processes to parent process 3863839: 1
[2025-10-13 07:42:11] 2025-10-13 05:41:27,296 | INFO     | maximum number of monitored processes: 6
[2025-10-13 07:42:11] 2025-10-13 05:41:27,296 | INFO     | aborting job monitoring since job object (job id=6840223781) has expired
[2025-10-13 07:42:11] 2025-10-13 05:41:27,325 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 07:42:11] 2025-10-13 05:41:27,338 | INFO     | sufficient remaining disk space (336985063424 B)
[2025-10-13 07:42:11] 2025-10-13 05:41:27,338 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 07:42:11] 2025-10-13 05:41:27,339 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 07:42:11] 2025-10-13 05:41:27,339 | INFO     | update_server=False
[2025-10-13 07:42:11] 2025-10-13 05:41:27,339 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 07:42:11] 2025-10-13 05:41:27,339 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:42:11] 2025-10-13 05:41:27,339 | INFO     | will abort loop
[2025-10-13 07:42:11] 2025-10-13 05:41:27,421 | INFO     | all data control threads have been joined
[2025-10-13 07:42:11] 2025-10-13 05:41:27,421 | INFO     | all job control threads have been joined
[2025-10-13 07:42:11] 2025-10-13 05:41:27,509 | INFO     | all payload control threads have been joined
[2025-10-13 07:42:11] 2025-10-13 05:41:27,964 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 07:42:11] 2025-10-13 05:41:28,344 | INFO     | [job] retrieve thread has finished
[2025-10-13 07:42:11] 2025-10-13 05:41:28,345 | INFO     | [job] job monitor thread has finished
[2025-10-13 07:42:11] 2025-10-13 05:41:28,398 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 07:42:11] 2025-10-13 05:41:28,426 | INFO     | [data] control thread has finished
[2025-10-13 07:42:11] 2025-10-13 05:41:28,427 | INFO     | [job] control thread has finished
[2025-10-13 07:42:11] 2025-10-13 05:41:28,483 | INFO     | [payload] validate_post thread has finished
[2025-10-13 07:42:11] 2025-10-13 05:41:28,489 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 07:42:11] 2025-10-13 05:41:28,515 | INFO     | [payload] control thread has finished
[2025-10-13 07:42:11] 2025-10-13 05:41:28,686 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 07:42:11] 2025-10-13 05:41:29,088 | INFO     | [payload] failed_post thread has finished
[2025-10-13 07:42:11] 2025-10-13 05:41:29,533 | INFO     | [data] copytool_in thread has finished
[2025-10-13 07:42:11] 2025-10-13 05:41:29,554 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 07:42:11] 2025-10-13 05:41:29,769 | INFO     | [job] validate thread has finished
[2025-10-13 07:42:11] 2025-10-13 05:41:29,816 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 07:42:11] 2025-10-13 05:41:29,971 | INFO     | [data] copytool_out thread has finished
[2025-10-13 07:42:11] 2025-10-13 05:41:30,272 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:42:11] 2025-10-13 05:41:31,277 | INFO     | [job] queue monitor thread has finished
[2025-10-13 07:42:11] 2025-10-13 05:41:32,496 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 07:42:11] 2025-10-13 05:41:57,067 | INFO     | PID=3857269 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 07:42:11] 2025-10-13 05:41:57,068 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 07:42:11] 2025-10-13 05:41:57,068 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 07:42:11] 2025-10-13 05:41:57,068 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 07:42:11] 2025-10-13 05:42:04,670 | INFO     | [monitor] cgroup control has ended
[2025-10-13 07:42:11] 2025-10-13 05:42:06,494 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140673149232960)>', '<ExcThread(monitor, started 140672526972672)>']
[2025-10-13 07:42:11] 2025-10-13 05:42:07,122 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 07:42:11] 2025-10-13 05:42:07,122 | INFO     | [monitor] control thread has ended
[2025-10-13 07:42:11] 2025-10-13 05:42:11,520 | INFO     | all workflow threads have been joined
[2025-10-13 07:42:11] 2025-10-13 05:42:11,520 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 07:42:11] 2025-10-13 05:42:11,520 | INFO     | traces error code: 0
[2025-10-13 07:42:11] 2025-10-13 05:42:11,521 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 07:42:11] 2025-10-13 05:42:11,576 [wrapper] ==== pilot stdout END ====
[2025-10-13 07:42:11] 2025-10-13 05:42:11,579 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 07:42:11] 2025-10-13 05:42:11,581 [wrapper] pilotpid: 3857269
[2025-10-13 07:42:11] 2025-10-13 05:42:11,584 [wrapper] Pilot exit status: 0
[2025-10-13 07:42:11] 2025-10-13 05:42:11,592 [wrapper] pandaids: 6840223781
[2025-10-13 07:42:11] 2025-10-13 05:42:11,610 [wrapper] cleanup supervisor_pilot 3873416 3857270
[2025-10-13 07:42:11] 2025-10-13 05:42:11,613 [wrapper] Test setup, not cleaning
[2025-10-13 07:42:11] 2025-10-13 05:42:11,615 [wrapper] apfmon messages muted
[2025-10-13 07:42:11] 2025-10-13 05:42:11,618 [wrapper] ==== wrapper stdout END ====
[2025-10-13 07:42:11] 2025-10-13 05:42:11,620 [wrapper] ==== wrapper stderr END ====
[2025-10-13 07:42:11]  *** Error codes and diagnostics ***
[2025-10-13 07:42:11]     "exeErrorCode": 0,
[2025-10-13 07:42:11]     "exeErrorDiag": "",
[2025-10-13 07:42:11]     "pilotErrorCode": 0,
[2025-10-13 07:42:11]     "pilotErrorDiag": "",
[2025-10-13 07:42:11]  *** Listing of results directory ***
[2025-10-13 07:42:11] total 412668
[2025-10-13 07:42:11] -rw-r--r-- 1 boinc boinc    557409 Oct 12 17:00 pilot3.tar.gz
[2025-10-13 07:42:11] -rwx------ 1 boinc boinc     36292 Oct 12 17:12 runpilot2-wrapper.sh
[2025-10-13 07:42:11] -rw-r--r-- 1 boinc boinc      5112 Oct 12 17:12 queuedata.json
[2025-10-13 07:42:11] -rw-r--r-- 1 boinc boinc       100 Oct 13 06:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 07:42:11] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 06:37 run_atlas
[2025-10-13 07:42:11] -rw-r--r-- 1 boinc boinc       105 Oct 13 06:37 job.xml
[2025-10-13 07:42:11] -rw-r--r-- 2 boinc boinc 219370603 Oct 13 06:37 EVNT.46676267._004557.pool.root.1
[2025-10-13 07:42:11] -rw-r--r-- 2 boinc boinc    569680 Oct 13 06:37 input.tar.gz
[2025-10-13 07:42:11] -rw-r--r-- 2 boinc boinc     15120 Oct 13 06:37 start_atlas.sh
[2025-10-13 07:42:11] drwxrwx--x 2 boinc boinc      4096 Oct 13 06:37 shared
[2025-10-13 07:42:11] -rw-r--r-- 1 boinc boinc         0 Oct 13 06:37 boinc_setup_complete
[2025-10-13 07:42:11] -rw-r--r-- 1 boinc boinc      6443 Oct 13 06:37 init_data.xml
[2025-10-13 07:42:11] -rw-r--r-- 1 boinc boinc         0 Oct 13 06:37 boinc_lockfile
[2025-10-13 07:42:11] -rw-r--r-- 1 boinc boinc      2550 Oct 13 06:37 pandaJob.out
[2025-10-13 07:42:11] -rw------- 1 boinc boinc    974365 Oct 13 06:37 agis_schedconf.cvmfs.json
[2025-10-13 07:42:11] -rw------- 1 boinc boinc   1560580 Oct 13 06:37 agis_ddmendpoints.agis.ALL.json
[2025-10-13 07:42:11] drwx------ 5 boinc boinc      4096 Oct 13 06:37 pilot3
[2025-10-13 07:42:11] -rw------- 1 boinc boinc 197635634 Oct 13 07:41 HITS.46676269._081885.pool.root.1
[2025-10-13 07:42:11] -rw-r--r-- 1 boinc boinc       530 Oct 13 07:41 boinc_task_state.xml
[2025-10-13 07:42:11] -rw------- 1 boinc boinc      1031 Oct 13 07:41 memory_monitor_summary.json
[2025-10-13 07:42:11] -rw------- 1 boinc boinc        95 Oct 13 07:41 pilot_heartbeat.json
[2025-10-13 07:42:11] -rw------- 1 boinc boinc    265238 Oct 13 07:41 log.46676269._081885.job.log.tgz.1
[2025-10-13 07:42:11] -rw------- 1 boinc boinc      7757 Oct 13 07:41 heartbeat.json
[2025-10-13 07:42:11] -rw-r--r-- 1 boinc boinc        27 Oct 13 07:41 wrapper_checkpoint.txt
[2025-10-13 07:42:11] -rw-r--r-- 1 boinc boinc      8192 Oct 13 07:42 boinc_mmap_file
[2025-10-13 07:42:11] -rw------- 1 boinc boinc      5276 Oct 13 07:42 pilotlog.txt
[2025-10-13 07:42:11] -rw------- 1 boinc boinc    572831 Oct 13 07:42 log.46676269._081885.job.log.1
[2025-10-13 07:42:11] -rw------- 1 boinc boinc       357 Oct 13 07:42 output.list
[2025-10-13 07:42:11] -rw-r--r-- 1 boinc boinc       620 Oct 13 07:42 runtime_log
[2025-10-13 07:42:11] -rw------- 1 boinc boinc    860160 Oct 13 07:42 result.tar.gz
[2025-10-13 07:42:11] -rw-r--r-- 1 boinc boinc      8782 Oct 13 07:42 runtime_log.err
[2025-10-13 07:42:11] -rw------- 1 boinc boinc       659 Oct 13 07:42 lCSNDmPvCS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmzDUMDmxA28An.diag
[2025-10-13 07:42:11] -rw-r--r-- 1 boinc boinc     11745 Oct 13 07:42 stderr.txt
[2025-10-13 07:42:11] HITS file was successfully produced:
[2025-10-13 07:42:11] -rw------- 1 boinc boinc 197635634 Oct 13 07:41 shared/HITS.pool.root.1
[2025-10-13 07:42:11]  *** Contents of shared directory: ***
[2025-10-13 07:42:11] total 408660
[2025-10-13 07:42:11] -rw-r--r-- 2 boinc boinc 219370603 Oct 13 06:37 ATLAS.root_0
[2025-10-13 07:42:11] -rw-r--r-- 2 boinc boinc    569680 Oct 13 06:37 input.tar.gz
[2025-10-13 07:42:11] -rw-r--r-- 2 boinc boinc     15120 Oct 13 06:37 start_atlas.sh
[2025-10-13 07:42:11] -rw------- 1 boinc boinc 197635634 Oct 13 07:41 HITS.pool.root.1
[2025-10-13 07:42:11] -rw------- 1 boinc boinc    860160 Oct 13 07:42 result.tar.gz
07:42:13 (3853491): run_atlas exited; CPU time 14336.091150
07:42:13 (3853491): called boinc_finish(0)

</stderr_txt>
]]>

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