Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:12:58 (8019): wrapper (7.7.26015): starting
06:12:58 (8019): wrapper: running run_atlas (--nthreads 8)
[2025-10-14 06:12:58] Arguments: --nthreads 8
[2025-10-14 06:12:58] Threads: 8
[2025-10-14 06:12:58] Checking for CVMFS
[2025-10-14 06:12:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-14 06:12:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-14 06:12:59] Running cvmfs_config stat atlas.cern.ch
[2025-10-14 06:13:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-14 06:13:00] 2.11.2.0 26867 222792 136872 151684 2 125 19294185 25165825 4585 130560 0 116667598 99.882 62194761 3004 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-14 06:13:00] CVMFS is ok
[2025-10-14 06:13:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-14 06:13:01] Checking for apptainer binary...
[2025-10-14 06:13:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-14 06:13:01] Running /usr/bin/apptainer --version
[2025-10-14 06:13:01] apptainer version 1.3.2-1.el7
[2025-10-14 06:13:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-14 06:13:11] cg-vwn435.simple-grid.lan
[2025-10-14 06:13:11] apptainer works
[2025-10-14 06:13:11] Set ATHENA_PROC_NUMBER=8
[2025-10-14 06:13:11] Set ATHENA_CORE_NUMBER=8
[2025-10-14 06:13:11] Starting ATLAS job with PandaID=6840430252
[2025-10-14 06:13:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 10:07:02]  *** The last 200 lines of the pilot log: ***
[2025-10-14 10:07:03] 2025-10-14 08:05:51,770 | INFO     | sum of square deviations: 3168461268.0
[2025-10-14 10:07:03] 2025-10-14 08:05:51,772 | INFO     | sum of deviations: 54348675045.99999
[2025-10-14 10:07:03] 2025-10-14 08:05:51,772 | INFO     | mean x: 1760422455.0
[2025-10-14 10:07:03] 2025-10-14 08:05:51,772 | INFO     | mean y: 2452293.5622119815
[2025-10-14 10:07:03] 2025-10-14 08:05:51,772 | INFO     | -- intersect: -30194106811.25199
[2025-10-14 10:07:03] 2025-10-14 08:05:51,772 | INFO     | intersect: -30194106811.25199
[2025-10-14 10:07:03] 2025-10-14 08:05:51,772 | INFO     | chi2: 7.3411078176120865
[2025-10-14 10:07:03] 2025-10-14 08:05:51,773 | INFO     | sum of square deviations: 2954447953.0
[2025-10-14 10:07:03] 2025-10-14 08:05:51,782 | INFO     | sum of deviations: 68119726508.000046
[2025-10-14 10:07:03] 2025-10-14 08:05:51,783 | INFO     | mean x: 1760422302.5
[2025-10-14 10:07:03] 2025-10-14 08:05:51,783 | INFO     | mean y: 2461907.4150943398
[2025-10-14 10:07:03] 2025-10-14 08:05:51,783 | INFO     | -- intersect: -40587011216.69776
[2025-10-14 10:07:03] 2025-10-14 08:05:51,783 | INFO     | intersect: -40587011216.69776
[2025-10-14 10:07:03] 2025-10-14 08:05:51,783 | INFO     | chi2: 6.5812818760323255
[2025-10-14 10:07:03] 2025-10-14 08:05:51,783 | INFO     | current chi2=6.5812818760323255 (change=10.350289907973549 %)
[2025-10-14 10:07:03] 2025-10-14 08:05:51,784 | INFO     | right removable region: 211
[2025-10-14 10:07:03] 2025-10-14 08:05:51,784 | INFO     | sum of square deviations: 2954447953.0
[2025-10-14 10:07:03] 2025-10-14 08:05:51,785 | INFO     | sum of deviations: -19463689100.500004
[2025-10-14 10:07:03] 2025-10-14 08:05:51,785 | INFO     | mean x: 1760422607.5
[2025-10-14 10:07:03] 2025-10-14 08:05:51,786 | INFO     | mean y: 2504843.6745283017
[2025-10-14 10:07:03] 2025-10-14 08:05:51,786 | INFO     | -- intersect: 11600041460.651968
[2025-10-14 10:07:03] 2025-10-14 08:05:51,786 | INFO     | intersect: 11600041460.651968
[2025-10-14 10:07:03] 2025-10-14 08:05:51,786 | INFO     | chi2: 2.617008421479279
[2025-10-14 10:07:03] 2025-10-14 08:05:51,786 | INFO     | current chi2=2.617008421479279 (change=64.35131472663019 %)
[2025-10-14 10:07:03] 2025-10-14 08:05:51,786 | INFO     | sum of square deviations: 2750295288.0
[2025-10-14 10:07:03] 2025-10-14 08:05:51,788 | INFO     | sum of deviations: -57814719751.000015
[2025-10-14 10:07:03] 2025-10-14 08:05:51,788 | INFO     | mean x: 1760422760.0
[2025-10-14 10:07:03] 2025-10-14 08:05:51,788 | INFO     | mean y: 2533301.9806763283
[2025-10-14 10:07:03] 2025-10-14 08:05:51,788 | INFO     | -- intersect: 37008868206.00279
[2025-10-14 10:07:03] 2025-10-14 08:05:51,788 | INFO     | intersect: 37008868206.00279
[2025-10-14 10:07:03] 2025-10-14 08:05:51,788 | INFO     | chi2: 1.0815233611938817
[2025-10-14 10:07:03] 2025-10-14 08:05:51,789 | INFO     | current chi2=1.0815233611938817 (change=58.673294578756284 %)
[2025-10-14 10:07:03] 2025-10-14 08:05:51,789 | INFO     | sum of square deviations: 2555770710.5
[2025-10-14 10:07:03] 2025-10-14 08:05:51,790 | INFO     | sum of deviations: -58268322857.5
[2025-10-14 10:07:03] 2025-10-14 08:05:51,790 | INFO     | mean x: 1760422912.5
[2025-10-14 10:07:03] 2025-10-14 08:05:51,790 | INFO     | mean y: 2533611.301980198
[2025-10-14 10:07:03] 2025-10-14 08:05:51,790 | INFO     | -- intersect: 40137937859.37037
[2025-10-14 10:07:03] 2025-10-14 08:05:51,791 | INFO     | intersect: 40137937859.37037
[2025-10-14 10:07:03] 2025-10-14 08:05:51,791 | INFO     | chi2: 1.0545463025759787
[2025-10-14 10:07:03] 2025-10-14 08:05:51,791 | INFO     | current chi2=1.0545463025759787 (change=2.494357457810558 %)
[2025-10-14 10:07:03] 2025-10-14 08:05:51,791 | INFO     | left removable region: 30
[2025-10-14 10:07:03] 2025-10-14 08:05:51,791 | INFO     | sum of square deviations: 1838657730.0
[2025-10-14 10:07:03] 2025-10-14 08:05:51,792 | INFO     | sum of deviations: -24691756534.000004
[2025-10-14 10:07:03] 2025-10-14 08:05:51,793 | INFO     | mean x: 1760423187.0
[2025-10-14 10:07:03] 2025-10-14 08:05:51,793 | INFO     | mean y: 2529545.4861878455
[2025-10-14 10:07:03] 2025-10-14 08:05:51,793 | INFO     | -- intersect: 23643656450.71632
[2025-10-14 10:07:03] 2025-10-14 08:05:51,793 | INFO     | intersect: 23643656450.71632
[2025-10-14 10:07:03] 2025-10-14 08:05:51,793 | INFO     | chi2: 0.16137220408174974
[2025-10-14 10:07:03] 2025-10-14 08:05:51,793 | INFO     | -- intersect: 23643656450.71632
[2025-10-14 10:07:03] 2025-10-14 08:05:51,793 | INFO     | current memory leak: -13.43 B/s (using 181 data points, chi2=0.16)
[2025-10-14 10:07:03] 2025-10-14 08:05:51,794 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-14 10:07:03] 2025-10-14 08:05:51,794 | INFO     | ..............................
[2025-10-14 10:07:03] 2025-10-14 08:05:51,794 | INFO     | . Timing measurements:
[2025-10-14 10:07:03] 2025-10-14 08:05:51,794 | INFO     | . get job = 0 s
[2025-10-14 10:07:03] 2025-10-14 08:05:51,794 | INFO     | . initial setup = 5 s
[2025-10-14 10:07:03] 2025-10-14 08:05:51,794 | INFO     | . payload setup = 128 s
[2025-10-14 10:07:03] 2025-10-14 08:05:51,794 | INFO     | . stage-in = 0 s
[2025-10-14 10:07:03] 2025-10-14 08:05:51,794 | INFO     | . payload execution = 13358 s
[2025-10-14 10:07:03] 2025-10-14 08:05:51,794 | INFO     | . stage-out = 4 s
[2025-10-14 10:07:03] 2025-10-14 08:05:51,794 | INFO     | . log creation = 1 s
[2025-10-14 10:07:03] 2025-10-14 08:05:51,795 | INFO     | ..............................
[2025-10-14 10:07:03] 2025-10-14 08:05:51,903 | INFO     | 
[2025-10-14 10:07:03] 2025-10-14 08:05:51,904 | INFO     | job summary report
[2025-10-14 10:07:03] 2025-10-14 08:05:51,904 | INFO     | --------------------------------------------------
[2025-10-14 10:07:03] 2025-10-14 08:05:51,904 | INFO     | PanDA job id: 6840430252
[2025-10-14 10:07:03] 2025-10-14 08:05:51,904 | INFO     | task id: 46676269
[2025-10-14 10:07:03] 2025-10-14 08:05:51,904 | INFO     | errors: (none)
[2025-10-14 10:07:03] 2025-10-14 08:05:51,904 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-14 10:07:03] 2025-10-14 08:05:51,904 | INFO     | pilot state: finished 
[2025-10-14 10:07:03] 2025-10-14 08:05:51,904 | INFO     | transexitcode: 0
[2025-10-14 10:07:03] 2025-10-14 08:05:51,904 | INFO     | exeerrorcode: 0
[2025-10-14 10:07:03] 2025-10-14 08:05:51,904 | INFO     | exeerrordiag: 
[2025-10-14 10:07:03] 2025-10-14 08:05:51,905 | INFO     | exitcode: 0
[2025-10-14 10:07:03] 2025-10-14 08:05:51,905 | INFO     | exitmsg: OK
[2025-10-14 10:07:03] 2025-10-14 08:05:51,905 | INFO     | cpuconsumptiontime: 48213 s
[2025-10-14 10:07:03] 2025-10-14 08:05:51,905 | INFO     | nevents: 400
[2025-10-14 10:07:03] 2025-10-14 08:05:51,905 | INFO     | neventsw: 0
[2025-10-14 10:07:03] 2025-10-14 08:05:51,905 | INFO     | pid: 18390
[2025-10-14 10:07:03] 2025-10-14 08:05:51,905 | INFO     | pgrp: 18390
[2025-10-14 10:07:03] 2025-10-14 08:05:51,905 | INFO     | corecount: 8
[2025-10-14 10:07:03] 2025-10-14 08:05:51,905 | INFO     | event service: False
[2025-10-14 10:07:03] 2025-10-14 08:05:51,905 | INFO     | sizes: {0: 2348029, 1: 2348714, 2: 2348913, 13: 2348913, 23: 2348969, 34: 2348997, 45: 2349153, 55: 2349181, 66: 2349209, 77: 2349237, 88: 2349293, 94: 2349863, 98
[2025-10-14 10:07:03] 2025-10-14 08:05:51,905 | INFO     | --------------------------------------------------
[2025-10-14 10:07:03] 2025-10-14 08:05:51,905 | INFO     | 
[2025-10-14 10:07:03] 2025-10-14 08:05:51,905 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-10-14 10:07:03] 2025-10-14 08:05:52,207 | INFO     | time since job start (13761s) is within the limit (172800.0s)
[2025-10-14 10:07:03] 2025-10-14 08:05:52,288 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-14 10:07:03] 2025-10-14 08:05:52,288 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-14 10:07:03] 2025-10-14 08:05:52,288 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-14 10:07:03] 2025-10-14 08:05:52,288 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-14 10:07:03] 2025-10-14 08:05:52,288 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-14 10:07:03] 2025-10-14 08:05:52,288 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-14 10:07:03] 2025-10-14 08:05:52,288 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-14 10:07:03] 2025-10-14 08:05:52,288 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-14 10:07:03] 2025-10-14 08:05:52,288 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-14 10:07:03] 2025-10-14 08:05:52,289 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-14 10:07:03] 2025-10-14 08:05:52,289 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-14 10:07:03] 2025-10-14 08:05:52,289 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-14 10:07:03] 2025-10-14 08:05:52,289 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-14 10:07:03] 2025-10-14 08:05:52,289 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-14 10:07:03] 2025-10-14 08:05:52,289 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-14 10:07:03] 2025-10-14 08:05:52,289 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-14 10:07:03] 2025-10-14 08:05:52,289 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-14 10:07:03] 2025-10-14 08:05:52,289 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-14 10:07:03] 2025-10-14 08:05:52,289 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 10:07:03] 2025-10-14 08:05:52,289 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 10:07:03] 2025-10-14 08:05:52,289 | INFO     | job 6840430252 has completed (purged errors)
[2025-10-14 10:07:03] 2025-10-14 08:05:52,290 | INFO     | overall cleanup function is called
[2025-10-14 10:07:03] 2025-10-14 08:05:53,297 | INFO     | --- collectZombieJob: --- 10, [18390]
[2025-10-14 10:07:03] 2025-10-14 08:05:53,298 | INFO     | zombie collector waiting for pid 18390
[2025-10-14 10:07:03] 2025-10-14 08:05:53,298 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 10:07:03] 2025-10-14 08:05:53,298 | INFO     | collected zombie processes
[2025-10-14 10:07:03] 2025-10-14 08:05:53,298 | INFO     | will attempt to kill all subprocesses of pid=18390
[2025-10-14 10:07:03] 2025-10-14 08:05:53,383 | INFO     | process IDs to be killed: [18390] (in reverse order)
[2025-10-14 10:07:03] 2025-10-14 08:05:54,200 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 10:07:03] 2025-10-14 08:05:54,201 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 10:07:03] 2025-10-14 08:05:54,203 | INFO     | did not find any defunct processes belonging to 18390
[2025-10-14 10:07:03] 2025-10-14 08:05:54,206 | INFO     | did not find any defunct processes belonging to 18390
[2025-10-14 10:07:03] 2025-10-14 08:05:54,207 | INFO     | ready for new job
[2025-10-14 10:07:03] 2025-10-14 08:05:54,207 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 10:07:03] 2025-10-14 08:05:54,209 | INFO     | ***************************************
[2025-10-14 10:07:03] 2025-10-14 08:05:54,209 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-14 10:07:03] 2025-10-14 08:05:54,209 | INFO     | ***************************************
[2025-10-14 10:07:03] 2025-10-14 08:05:54,209 | INFO     | 
[2025-10-14 10:07:03] 2025-10-14 08:05:54,210 | INFO     | pilot is running in a VM
[2025-10-14 10:07:03] 2025-10-14 08:05:54,210 | INFO     | architecture information:
[2025-10-14 10:07:03] 2025-10-14 08:05:54,210 | INFO     | executing command: cat /etc/os-release
[2025-10-14 10:07:03] 2025-10-14 08:05:54,235 | INFO     | cat /etc/os-release:
[2025-10-14 10:07:03] NAME="CentOS Linux"
[2025-10-14 10:07:03] VERSION="7 (Core)"
[2025-10-14 10:07:03] ID="centos"
[2025-10-14 10:07:03] ID_LIKE="rhel fedora"
[2025-10-14 10:07:03] VERSION_ID="7"
[2025-10-14 10:07:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 10:07:03] ANSI_COLOR="0;31"
[2025-10-14 10:07:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 10:07:03] HOME_URL="https://www.centos.org/"
[2025-10-14 10:07:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 10:07:03] 
[2025-10-14 10:07:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 10:07:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 10:07:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 10:07:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 10:07:03] 
[2025-10-14 10:07:03] 2025-10-14 08:05:54,235 | INFO     | ***************************************
[2025-10-14 10:07:03] 2025-10-14 08:05:54,739 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-10-14 10:07:03] 2025-10-14 08:05:54,897 | INFO     | sufficient remaining disk space (496081305600 B)
[2025-10-14 10:07:03] 2025-10-14 08:05:54,898 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 10:07:03] 2025-10-14 08:05:54,898 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 10:07:03] 2025-10-14 08:05:54,898 | INFO     | update_server=False
[2025-10-14 10:07:03] 2025-10-14 08:05:54,898 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 10:07:03] 2025-10-14 08:05:55,249 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 10:07:03] 2025-10-14 08:05:55,375 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-14 10:07:03] 2025-10-14 08:05:55,376 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-14 10:07:03] 2025-10-14 08:05:55,376 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 10:07:03] 2025-10-14 08:05:55,376 | INFO     | will abort loop
[2025-10-14 10:07:03] 2025-10-14 08:05:55,612 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 10:07:03] 2025-10-14 08:05:55,690 | INFO     | all data control threads have been joined
[2025-10-14 10:07:03] 2025-10-14 08:05:55,900 | INFO     | all job control threads have been joined
[2025-10-14 10:07:03] 2025-10-14 08:05:55,905 | INFO     | [job] retrieve thread has finished
[2025-10-14 10:07:03] 2025-10-14 08:05:56,004 | INFO     | all payload control threads have been joined
[2025-10-14 10:07:03] 2025-10-14 08:05:56,380 | INFO     | [job] job monitor thread has finished
[2025-10-14 10:07:03] 2025-10-14 08:05:56,670 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 10:07:03] 2025-10-14 08:05:56,695 | INFO     | [payload] validate_post thread has finished
[2025-10-14 10:07:03] 2025-10-14 08:05:56,696 | INFO     | [data] control thread has finished
[2025-10-14 10:07:03] 2025-10-14 08:05:56,824 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 10:07:03] 2025-10-14 08:05:56,825 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 10:07:03] 2025-10-14 08:05:56,906 | INFO     | [job] control thread has finished
[2025-10-14 10:07:03] 2025-10-14 08:05:56,918 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 10:07:03] 2025-10-14 08:05:57,009 | INFO     | [payload] control thread has finished
[2025-10-14 10:07:03] 2025-10-14 08:05:57,169 | INFO     | [payload] failed_post thread has finished
[2025-10-14 10:07:03] 2025-10-14 08:05:57,271 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 10:07:03] 2025-10-14 08:05:57,323 | INFO     | [data] copytool_in thread has finished
[2025-10-14 10:07:03] 2025-10-14 08:05:57,351 | INFO     | [job] validate thread has finished
[2025-10-14 10:07:03] 2025-10-14 08:05:57,619 | INFO     | [data] copytool_out thread has finished
[2025-10-14 10:07:03] 2025-10-14 08:05:57,924 | INFO     | [job] queue monitor thread has finished
[2025-10-14 10:07:03] 2025-10-14 08:05:59,258 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 10:07:03] 2025-10-14 08:06:25,350 | INFO     | PID=11818 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-14 10:07:03] 2025-10-14 08:06:25,350 | INFO     | .. there are 9 such processes running
[2025-10-14 10:07:03] 2025-10-14 08:06:25,350 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 10:07:03] 2025-10-14 08:06:25,350 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 10:07:03] 2025-10-14 08:06:25,350 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 10:07:03] 2025-10-14 08:06:54,902 | INFO     | [monitor] cgroup control has ended
[2025-10-14 10:07:03] 2025-10-14 08:06:56,285 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140044683810624)>', '<ExcThread(monitor, started 140044111177472)>']
[2025-10-14 10:07:03] 2025-10-14 08:06:56,536 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 10:07:03] 2025-10-14 08:06:56,537 | INFO     | [monitor] control thread has ended
[2025-10-14 10:07:03] 2025-10-14 08:07:01,311 | INFO     | all workflow threads have been joined
[2025-10-14 10:07:03] 2025-10-14 08:07:01,312 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 10:07:03] 2025-10-14 08:07:01,312 | INFO     | traces error code: 0
[2025-10-14 10:07:03] 2025-10-14 08:07:01,312 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 10:07:03] 2025-10-14 08:07:01,486 [wrapper] ==== pilot stdout END ====
[2025-10-14 10:07:03] 2025-10-14 08:07:01,491 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 10:07:03] 2025-10-14 08:07:01,496 [wrapper] pilotpid: 11818
[2025-10-14 10:07:03] 2025-10-14 08:07:01,499 [wrapper] Pilot exit status: 0
[2025-10-14 10:07:03] 2025-10-14 08:07:01,517 [wrapper] pandaids: 6840430252
[2025-10-14 10:07:03] 2025-10-14 08:07:01,554 [wrapper] cleanup supervisor_pilot  8537 11819
[2025-10-14 10:07:03] 2025-10-14 08:07:01,566 [wrapper] Test setup, not cleaning
[2025-10-14 10:07:03] 2025-10-14 08:07:01,569 [wrapper] apfmon messages muted
[2025-10-14 10:07:03] 2025-10-14 08:07:01,572 [wrapper] ==== wrapper stdout END ====
[2025-10-14 10:07:03] 2025-10-14 08:07:01,575 [wrapper] ==== wrapper stderr END ====
[2025-10-14 10:07:03]  *** Error codes and diagnostics ***
[2025-10-14 10:07:03]     "exeErrorCode": 0,
[2025-10-14 10:07:03]     "exeErrorDiag": "",
[2025-10-14 10:07:03]     "pilotErrorCode": 0,
[2025-10-14 10:07:03]     "pilotErrorDiag": "",
[2025-10-14 10:07:03]  *** Listing of results directory ***
[2025-10-14 10:07:03] total 413284
[2025-10-14 10:07:03] -rw-r--r--. 1 boinc boinc    557409 Oct 12 19:32 pilot3.tar.gz
[2025-10-14 10:07:03] -rw-r--r--. 1 boinc boinc      5112 Oct 12 19:41 queuedata.json
[2025-10-14 10:07:03] -rwx------. 1 boinc boinc     36292 Oct 12 19:43 runpilot2-wrapper.sh
[2025-10-14 10:07:03] -rw-r--r--. 1 boinc boinc       100 Oct 14 06:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 10:07:03] -rwxr-xr-x. 1 boinc boinc      7986 Oct 14 06:12 run_atlas
[2025-10-14 10:07:03] -rw-r--r--. 1 boinc boinc       105 Oct 14 06:12 job.xml
[2025-10-14 10:07:03] -rw-r--r--. 1 boinc boinc      6387 Oct 14 06:12 init_data.xml
[2025-10-14 10:07:03] -rw-r--r--. 2 boinc boinc 221298073 Oct 14 06:12 EVNT.46676267._003279.pool.root.1
[2025-10-14 10:07:03] -rw-r--r--. 2 boinc boinc     15120 Oct 14 06:12 start_atlas.sh
[2025-10-14 10:07:03] drwxrwx--x. 2 boinc boinc        68 Oct 14 06:12 shared
[2025-10-14 10:07:03] -rw-r--r--. 2 boinc boinc    569681 Oct 14 06:12 input.tar.gz
[2025-10-14 10:07:03] -rw-r--r--. 1 boinc boinc         0 Oct 14 06:12 boinc_lockfile
[2025-10-14 10:07:03] -rw-r--r--. 1 boinc boinc      2550 Oct 14 06:13 pandaJob.out
[2025-10-14 10:07:03] -rw-------. 1 boinc boinc    972807 Oct 14 06:16 agis_schedconf.cvmfs.json
[2025-10-14 10:07:03] drwx------. 5 boinc boinc      4096 Oct 14 06:16 pilot3
[2025-10-14 10:07:03] -rw-------. 1 boinc boinc 193429997 Oct 14 10:03 HITS.46676269._085208.pool.root.1
[2025-10-14 10:07:03] -rw-r--r--. 1 boinc boinc       531 Oct 14 10:03 boinc_task_state.xml
[2025-10-14 10:07:03] -rw-------. 1 boinc boinc      1017 Oct 14 10:04 memory_monitor_summary.json
[2025-10-14 10:07:03] -rw-------. 1 boinc boinc   1560580 Oct 14 10:04 agis_ddmendpoints.agis.ALL.json
[2025-10-14 10:07:03] -rw-------. 1 boinc boinc    445649 Oct 14 10:04 log.46676269._085208.job.log.tgz.1
[2025-10-14 10:07:03] -rw-------. 1 boinc boinc        95 Oct 14 10:05 pilot_heartbeat.json
[2025-10-14 10:07:03] -rw-------. 1 boinc boinc      7788 Oct 14 10:05 heartbeat.json
[2025-10-14 10:07:03] -rw-r--r--. 1 boinc boinc        28 Oct 14 10:06 wrapper_checkpoint.txt
[2025-10-14 10:07:03] -rw-r--r--. 1 boinc boinc      8192 Oct 14 10:06 boinc_mmap_file
[2025-10-14 10:07:03] -rw-------. 1 boinc boinc      5070 Oct 14 10:07 pilotlog.txt
[2025-10-14 10:07:03] -rw-------. 1 boinc boinc   1849202 Oct 14 10:07 log.46676269._085208.job.log.1
[2025-10-14 10:07:03] -rw-------. 1 boinc boinc       357 Oct 14 10:07 output.list
[2025-10-14 10:07:03] -rw-r--r--. 1 boinc boinc       620 Oct 14 10:07 runtime_log
[2025-10-14 10:07:03] -rw-------. 1 boinc boinc   2314240 Oct 14 10:07 result.tar.gz
[2025-10-14 10:07:03] -rw-------. 1 boinc boinc       657 Oct 14 10:07 rXcKDmCHFS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOvkNDm13vsOo.diag
[2025-10-14 10:07:03] -rw-r--r--. 1 boinc boinc      8703 Oct 14 10:07 runtime_log.err
[2025-10-14 10:07:03] -rw-r--r--. 1 boinc boinc     20683 Oct 14 10:07 stderr.txt
[2025-10-14 10:07:03] HITS file was successfully produced:
[2025-10-14 10:07:03] -rw-------. 1 boinc boinc 193429997 Oct 14 10:03 shared/HITS.pool.root.1
[2025-10-14 10:07:03]  *** Contents of shared directory: ***
[2025-10-14 10:07:03] total 407848
[2025-10-14 10:07:03] -rw-r--r--. 2 boinc boinc 221298073 Oct 14 06:12 ATLAS.root_0
[2025-10-14 10:07:03] -rw-r--r--. 2 boinc boinc     15120 Oct 14 06:12 start_atlas.sh
[2025-10-14 10:07:03] -rw-r--r--. 2 boinc boinc    569681 Oct 14 06:12 input.tar.gz
[2025-10-14 10:07:03] -rw-------. 1 boinc boinc 193429997 Oct 14 10:03 HITS.pool.root.1
[2025-10-14 10:07:03] -rw-------. 1 boinc boinc   2314240 Oct 14 10:07 result.tar.gz
10:07:04 (8019): run_atlas exited; CPU time 48380.564598
10:07:04 (8019): called boinc_finish(0)

</stderr_txt>
]]>

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