Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:36:13 (3366182): wrapper (7.7.26015): starting
05:36:13 (3366182): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 05:36:13] Arguments: --nthreads 3
[2025-10-13 05:36:13] Threads: 3
[2025-10-13 05:36:13] Checking for CVMFS
[2025-10-13 05:36:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 05:36:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 05:36:14] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 05:36:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 05:36:14] 2.9.2.0 2127501 3989 82396 151647 2 57 29086560 36864001 0 130560 0 3256336 99.987 264199 1243 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 05:36:14] CVMFS is ok
[2025-10-13 05:36:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 05:36:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 05:36:14] Further information can be found at the LHC@home message board.
[2025-10-13 05:36:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 05:36:14] Checking for apptainer binary...
[2025-10-13 05:36:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 05:36:14] Running /usr/bin/apptainer --version
[2025-10-13 05:36:14] apptainer version 1.4.1-1.1
[2025-10-13 05:36:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 05:36:14] thA385
[2025-10-13 05:36:14] apptainer works
[2025-10-13 05:36:14] Set ATHENA_PROC_NUMBER=3
[2025-10-13 05:36:14] Set ATHENA_CORE_NUMBER=3
[2025-10-13 05:36:14] Starting ATLAS job with PandaID=6840225838
[2025-10-13 05:36:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 06:58:31]  *** The last 200 lines of the pilot log: ***
[2025-10-13 06:58:31] 2025-10-13 04:57:34,663 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 06:58:31] 2025-10-13 04:57:34,663 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 06:58:31] 2025-10-13 04:57:35,011 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 06:58:31] 2025-10-13 04:57:35,199 | INFO     | all payload control threads have been joined
[2025-10-13 06:58:31] 2025-10-13 04:57:35,421 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:58:31] 2025-10-13 04:57:35,421 | INFO     | aborting loop
[2025-10-13 06:58:31] 2025-10-13 04:57:35,668 | INFO     | [job] queue monitor thread has finished
[2025-10-13 06:58:31] 2025-10-13 04:57:35,668 | INFO     | [job] retrieve thread has finished
[2025-10-13 06:58:31] 2025-10-13 04:57:35,689 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 06:58:31] 2025-10-13 04:57:35,738 | INFO     | all data control threads have been joined
[2025-10-13 06:58:31] 2025-10-13 04:57:35,863 | INFO     | all job control threads have been joined
[2025-10-13 06:58:31] 2025-10-13 04:57:35,867 | INFO     | [payload] failed_post thread has finished
[2025-10-13 06:58:31] 2025-10-13 04:57:35,899 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 06:58:31] 2025-10-13 04:57:36,008 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 06:58:31] 2025-10-13 04:57:36,118 | INFO     | [job] validate thread has finished
[2025-10-13 06:58:31] 2025-10-13 04:57:36,205 | INFO     | [payload] control thread has finished
[2025-10-13 06:58:31] 2025-10-13 04:57:36,421 | INFO     | [payload] validate_post thread has finished
[2025-10-13 06:58:31] 2025-10-13 04:57:36,427 | INFO     | [job] job monitor thread has finished
[2025-10-13 06:58:31] 2025-10-13 04:57:36,584 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 06:58:31] 2025-10-13 04:57:36,712 | INFO     | [data] copytool_in thread has finished
[2025-10-13 06:58:31] 2025-10-13 04:57:36,743 | INFO     | [data] control thread has finished
[2025-10-13 06:58:31] 2025-10-13 04:57:36,869 | INFO     | [job] control thread has finished
[2025-10-13 06:58:31] 2025-10-13 04:57:37,017 | INFO     | [data] copytool_out thread has finished
[2025-10-13 06:58:31] 2025-10-13 04:57:40,013 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 06:58:31] 2025-10-13 04:57:45,096 | INFO     | job.realtimelogging is not enabled
[2025-10-13 06:58:31] 2025-10-13 04:57:46,102 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 06:58:31] 2025-10-13 04:58:25,345 | INFO     | [monitor] cgroup control has ended
[2025-10-13 06:58:31] 2025-10-13 04:58:26,062 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140025416558400)>', '<ExcThread(monitor, started 140024741861120)>']
[2025-10-13 06:58:31] 2025-10-13 04:58:26,921 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 06:58:31] 2025-10-13 04:58:26,921 | INFO     | [monitor] control thread has ended
[2025-10-13 06:58:31] 2025-10-13 04:58:31,066 | INFO     | all workflow threads have been joined
[2025-10-13 06:58:31] 2025-10-13 04:58:31,067 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 06:58:31] 2025-10-13 04:58:31,067 | INFO     | traces error code: 0
[2025-10-13 06:58:31] 2025-10-13 04:58:31,067 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 06:58:31] 2025-10-13 04:58:31,117 [wrapper] ==== pilot stdout END ====
[2025-10-13 06:58:31] 2025-10-13 04:58:31,120 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 06:58:31] 2025-10-13 04:58:31,122 [wrapper] pilotpid: 3369897
[2025-10-13 06:58:31] 2025-10-13 04:58:31,125 [wrapper] Pilot exit status: 0
[2025-10-13 06:58:31] 2025-10-13 04:58:31,132 [wrapper] pandaids: 6840225838
[2025-10-13 06:58:31] 2025-10-13 04:58:31,151 [wrapper] cleanup supervisor_pilot 3388215 3369898
[2025-10-13 06:58:31] 2025-10-13 04:58:31,153 [wrapper] Test setup, not cleaning
[2025-10-13 06:58:31] 2025-10-13 04:58:31,156 [wrapper] apfmon messages muted
[2025-10-13 06:58:31] 2025-10-13 04:58:31,159 [wrapper] ==== wrapper stdout END ====
[2025-10-13 06:58:31] 2025-10-13 04:58:31,161 [wrapper] ==== wrapper stderr END ====
[2025-10-13 06:58:31]  *** Error codes and diagnostics ***
[2025-10-13 06:58:31]     "exeErrorCode": 0,
[2025-10-13 06:58:31]     "exeErrorDiag": "",
[2025-10-13 06:58:31]     "pilotErrorCode": 0,
[2025-10-13 06:58:31]     "pilotErrorDiag": "",
[2025-10-13 06:58:31]  *** Listing of results directory ***
[2025-10-13 06:58:31] total 409408
[2025-10-13 06:58:31] -rw-r--r-- 1 boinc boinc    557409 Oct 12 17:00 pilot3.tar.gz
[2025-10-13 06:58:31] -rw-r--r-- 1 boinc boinc      5112 Oct 12 17:58 queuedata.json
[2025-10-13 06:58:31] -rwx------ 1 boinc boinc     36292 Oct 12 17:58 runpilot2-wrapper.sh
[2025-10-13 06:58:31] -rw-r--r-- 1 boinc boinc       100 Oct 13 05:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 06:58:31] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 05:36 run_atlas
[2025-10-13 06:58:31] -rw-r--r-- 1 boinc boinc       105 Oct 13 05:36 job.xml
[2025-10-13 06:58:31] -rw-r--r-- 2 boinc boinc 222190501 Oct 13 05:36 EVNT.46676267._004597.pool.root.1
[2025-10-13 06:58:31] -rw-r--r-- 2 boinc boinc    569681 Oct 13 05:36 input.tar.gz
[2025-10-13 06:58:31] -rw-r--r-- 2 boinc boinc     15120 Oct 13 05:36 start_atlas.sh
[2025-10-13 06:58:31] drwxrwx--x 2 boinc boinc      4096 Oct 13 05:36 shared
[2025-10-13 06:58:31] -rw-r--r-- 1 boinc boinc         0 Oct 13 05:36 boinc_setup_complete
[2025-10-13 06:58:31] -rw-r--r-- 1 boinc boinc      6446 Oct 13 05:36 init_data.xml
[2025-10-13 06:58:31] -rw-r--r-- 1 boinc boinc         0 Oct 13 05:36 boinc_lockfile
[2025-10-13 06:58:31] -rw-r--r-- 1 boinc boinc      2550 Oct 13 05:36 pandaJob.out
[2025-10-13 06:58:31] -rw------- 1 boinc boinc    974373 Oct 13 05:36 agis_schedconf.cvmfs.json
[2025-10-13 06:58:31] -rw------- 1 boinc boinc   1560580 Oct 13 05:36 agis_ddmendpoints.agis.ALL.json
[2025-10-13 06:58:31] drwx------ 5 boinc boinc      4096 Oct 13 05:36 pilot3
[2025-10-13 06:58:31] -rw------- 1 boinc boinc        95 Oct 13 06:56 pilot_heartbeat.json
[2025-10-13 06:58:31] -rw------- 1 boinc boinc 191212533 Oct 13 06:57 HITS.46676269._082878.pool.root.1
[2025-10-13 06:58:31] -rw-r--r-- 1 boinc boinc       529 Oct 13 06:57 boinc_task_state.xml
[2025-10-13 06:58:31] -rw------- 1 boinc boinc      1020 Oct 13 06:57 memory_monitor_summary.json
[2025-10-13 06:58:31] -rw------- 1 boinc boinc    254913 Oct 13 06:57 log.46676269._082878.job.log.tgz.1
[2025-10-13 06:58:31] -rw------- 1 boinc boinc      7757 Oct 13 06:57 heartbeat.json
[2025-10-13 06:58:31] -rw-r--r-- 1 boinc boinc      8192 Oct 13 06:58 boinc_mmap_file
[2025-10-13 06:58:31] -rw-r--r-- 1 boinc boinc        27 Oct 13 06:58 wrapper_checkpoint.txt
[2025-10-13 06:58:31] -rw------- 1 boinc boinc      4628 Oct 13 06:58 pilotlog.txt
[2025-10-13 06:58:31] -rw------- 1 boinc boinc    715904 Oct 13 06:58 log.46676269._082878.job.log.1
[2025-10-13 06:58:31] -rw------- 1 boinc boinc       357 Oct 13 06:58 output.list
[2025-10-13 06:58:31] -rw-r--r-- 1 boinc boinc       620 Oct 13 06:58 runtime_log
[2025-10-13 06:58:31] -rw------- 1 boinc boinc    993280 Oct 13 06:58 result.tar.gz
[2025-10-13 06:58:31] -rw------- 1 boinc boinc       658 Oct 13 06:58 urMLDmOeDS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmCXkNDmT1BuCn.diag
[2025-10-13 06:58:31] -rw-r--r-- 1 boinc boinc      8777 Oct 13 06:58 runtime_log.err
[2025-10-13 06:58:31] -rw-r--r-- 1 boinc boinc      6850 Oct 13 06:58 stderr.txt
[2025-10-13 06:58:31] HITS file was successfully produced:
[2025-10-13 06:58:31] -rw------- 1 boinc boinc 191212533 Oct 13 06:57 shared/HITS.pool.root.1
[2025-10-13 06:58:31]  *** Contents of shared directory: ***
[2025-10-13 06:58:31] total 405272
[2025-10-13 06:58:31] -rw-r--r-- 2 boinc boinc 222190501 Oct 13 05:36 ATLAS.root_0
[2025-10-13 06:58:31] -rw-r--r-- 2 boinc boinc    569681 Oct 13 05:36 input.tar.gz
[2025-10-13 06:58:31] -rw-r--r-- 2 boinc boinc     15120 Oct 13 05:36 start_atlas.sh
[2025-10-13 06:58:31] -rw------- 1 boinc boinc 191212533 Oct 13 06:57 HITS.pool.root.1
[2025-10-13 06:58:31] -rw------- 1 boinc boinc    993280 Oct 13 06:58 result.tar.gz
06:58:32 (3366182): run_atlas exited; CPU time 13959.843139
06:58:32 (3366182): called boinc_finish(0)

</stderr_txt>
]]>

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