Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:08:12 (5979): wrapper (7.7.26015): starting
15:08:12 (5979): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 15:08:12] Arguments: --nthreads 8
[2025-10-12 15:08:12] Threads: 8
[2025-10-12 15:08:12] Checking for CVMFS
[2025-10-12 15:08:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 15:08:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 15:08:12] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 15:08:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 15:08:12] 2.11.2.0 2880 88997 83564 151633 3 57 14194501 20275200 1 130560 0 43627084 99.988 2816428 18200 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 15:08:12] CVMFS is ok
[2025-10-12 15:08:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 15:08:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 15:08:12] Further information can be found at the LHC@home message board.
[2025-10-12 15:08:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 15:08:12] Checking for apptainer binary...
[2025-10-12 15:08:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 15:08:12] Running /usr/bin/apptainer --version
[2025-10-12 15:08:12] apptainer version 1.3.2-1.el7
[2025-10-12 15:08:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 15:08:14] c-115-10.aglt2.org
[2025-10-12 15:08:14] apptainer works
[2025-10-12 15:08:14] Set ATHENA_PROC_NUMBER=8
[2025-10-12 15:08:14] Set ATHENA_CORE_NUMBER=8
[2025-10-12 15:08:14] Starting ATLAS job with PandaID=6840430119
[2025-10-12 15:08:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 16:58:47]  *** The last 200 lines of the pilot log: ***
[2025-10-12 16:58:47] 2025-10-12 20:57:39,575 | INFO     | monitor loop #487: job 0:6840430119 is in state 'finished'
[2025-10-12 16:58:47] 2025-10-12 20:57:39,575 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:58:47] 2025-10-12 20:57:39,968 | INFO     | time since job start (6548s) is within the limit (172800.0s)
[2025-10-12 16:58:47] 2025-10-12 20:57:41,927 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 16:58:47] 2025-10-12 20:57:41,931 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1762.375
[2025-10-12 16:58:47] 2025-10-12 20:57:41,933 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840430119/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 16:58:47] 2025-10-12 20:57:41,934 | INFO     | extracted standard info from prmon json
[2025-10-12 16:58:47] 2025-10-12 20:57:41,934 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 16:58:47] 2025-10-12 20:57:41,934 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 16:58:47] 2025-10-12 20:57:41,935 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 16:58:47] 2025-10-12 20:57:41,935 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 16:58:47] 2025-10-12 20:57:41,938 | INFO     | fitting pss+swap vs Time
[2025-10-12 16:58:47] 2025-10-12 20:57:41,938 | INFO     | sum of square deviations: 379832238.0
[2025-10-12 16:58:47] 2025-10-12 20:57:41,938 | INFO     | sum of deviations: 3482464014.000002
[2025-10-12 16:58:47] 2025-10-12 20:57:41,939 | INFO     | mean x: 1760299375.0
[2025-10-12 16:58:47] 2025-10-12 20:57:41,939 | INFO     | mean y: 2526761.037383178
[2025-10-12 16:58:47] 2025-10-12 20:57:41,939 | INFO     | -- intersect: -16136648943.432953
[2025-10-12 16:58:47] 2025-10-12 20:57:41,939 | INFO     | intersect: -16136648943.432953
[2025-10-12 16:58:47] 2025-10-12 20:57:41,939 | INFO     | chi2: 1.4490262067768338
[2025-10-12 16:58:47] 2025-10-12 20:57:41,939 | INFO     | sum of square deviations: 329031285.5
[2025-10-12 16:58:47] 2025-10-12 20:57:41,940 | INFO     | sum of deviations: 3435475592.0000024
[2025-10-12 16:58:47] 2025-10-12 20:57:41,940 | INFO     | mean x: 1760299222.5
[2025-10-12 16:58:47] 2025-10-12 20:57:41,940 | INFO     | mean y: 2526620.3333333335
[2025-10-12 16:58:47] 2025-10-12 20:57:41,940 | INFO     | -- intersect: -18377078237.98745
[2025-10-12 16:58:47] 2025-10-12 20:57:41,940 | INFO     | intersect: -18377078237.98745
[2025-10-12 16:58:47] 2025-10-12 20:57:41,941 | INFO     | chi2: 1.4512280453369684
[2025-10-12 16:58:47] 2025-10-12 20:57:41,941 | INFO     | current chi2=1.4512280453369684 (change=-0.15195298399966545 %)
[2025-10-12 16:58:47] 2025-10-12 20:57:41,941 | INFO     | right removable region: 101
[2025-10-12 16:58:47] 2025-10-12 20:57:41,941 | INFO     | sum of square deviations: 329031285.5
[2025-10-12 16:58:47] 2025-10-12 20:57:41,941 | INFO     | sum of deviations: -11229534743.5
[2025-10-12 16:58:47] 2025-10-12 20:57:41,942 | INFO     | mean x: 1760299527.5
[2025-10-12 16:58:47] 2025-10-12 20:57:41,942 | INFO     | mean y: 2569905.5588235296
[2025-10-12 16:58:47] 2025-10-12 20:57:41,942 | INFO     | -- intersect: 60079971581.78297
[2025-10-12 16:58:47] 2025-10-12 20:57:41,942 | INFO     | intersect: 60079971581.78297
[2025-10-12 16:58:47] 2025-10-12 20:57:41,942 | INFO     | chi2: 0.09081844765628234
[2025-10-12 16:58:47] 2025-10-12 20:57:41,942 | INFO     | current chi2=0.09081844765628234 (change=93.73244961122575 %)
[2025-10-12 16:58:47] 2025-10-12 20:57:41,943 | INFO     | sum of square deviations: 282974608.0
[2025-10-12 16:58:47] 2025-10-12 20:57:41,943 | INFO     | sum of deviations: -8379404812.000001
[2025-10-12 16:58:47] 2025-10-12 20:57:41,943 | INFO     | mean x: 1760299680.0
[2025-10-12 16:58:47] 2025-10-12 20:57:41,943 | INFO     | mean y: 2560432.474226804
[2025-10-12 16:58:47] 2025-10-12 20:57:41,943 | INFO     | -- intersect: 52128310207.005455
[2025-10-12 16:58:47] 2025-10-12 20:57:41,943 | INFO     | intersect: 52128310207.005455
[2025-10-12 16:58:47] 2025-10-12 20:57:41,944 | INFO     | chi2: 0.084863574400746
[2025-10-12 16:58:47] 2025-10-12 20:57:41,944 | INFO     | current chi2=0.084863574400746 (change=6.556898305588264 %)
[2025-10-12 16:58:47] 2025-10-12 20:57:41,944 | INFO     | left removable region: 20
[2025-10-12 16:58:47] 2025-10-12 20:57:41,944 | INFO     | sum of square deviations: 164765880.0
[2025-10-12 16:58:47] 2025-10-12 20:57:41,944 | INFO     | sum of deviations: -1450662106.0000002
[2025-10-12 16:58:47] 2025-10-12 20:57:41,944 | INFO     | mean x: 1760299802.0
[2025-10-12 16:58:47] 2025-10-12 20:57:41,945 | INFO     | mean y: 2534037.4567901236
[2025-10-12 16:58:47] 2025-10-12 20:57:41,945 | INFO     | -- intersect: 15500889752.612766
[2025-10-12 16:58:47] 2025-10-12 20:57:41,945 | INFO     | intersect: 15500889752.612766
[2025-10-12 16:58:47] 2025-10-12 20:57:41,945 | INFO     | chi2: 0.03266802441446474
[2025-10-12 16:58:47] 2025-10-12 20:57:41,945 | INFO     | -- intersect: 15500889752.612766
[2025-10-12 16:58:47] 2025-10-12 20:57:41,945 | INFO     | current memory leak: -8.80 B/s (using 81 data points, chi2=0.03)
[2025-10-12 16:58:47] 2025-10-12 20:57:41,946 | INFO     | could have reported an average CPU frequency of 2083 MHz (7 samples)
[2025-10-12 16:58:47] 2025-10-12 20:57:41,946 | INFO     | ..............................
[2025-10-12 16:58:47] 2025-10-12 20:57:41,946 | INFO     | . Timing measurements:
[2025-10-12 16:58:47] 2025-10-12 20:57:41,946 | INFO     | . get job = 0 s
[2025-10-12 16:58:47] 2025-10-12 20:57:41,946 | INFO     | . initial setup = 2 s
[2025-10-12 16:58:47] 2025-10-12 20:57:41,946 | INFO     | . payload setup = 8 s
[2025-10-12 16:58:47] 2025-10-12 20:57:41,946 | INFO     | . stage-in = 0 s
[2025-10-12 16:58:47] 2025-10-12 20:57:41,946 | INFO     | . payload execution = 6511 s
[2025-10-12 16:58:47] 2025-10-12 20:57:41,947 | INFO     | . stage-out = 0 s
[2025-10-12 16:58:47] 2025-10-12 20:57:41,947 | INFO     | . log creation = 0 s
[2025-10-12 16:58:47] 2025-10-12 20:57:41,947 | INFO     | ..............................
[2025-10-12 16:58:47] 2025-10-12 20:57:41,983 | INFO     | time since job start (6550s) is within the limit (172800.0s)
[2025-10-12 16:58:47] 2025-10-12 20:57:42,032 | INFO     | 
[2025-10-12 16:58:47] 2025-10-12 20:57:42,032 | INFO     | job summary report
[2025-10-12 16:58:47] 2025-10-12 20:57:42,033 | INFO     | --------------------------------------------------
[2025-10-12 16:58:47] 2025-10-12 20:57:42,033 | INFO     | PanDA job id: 6840430119
[2025-10-12 16:58:47] 2025-10-12 20:57:42,033 | INFO     | task id: 46676269
[2025-10-12 16:58:47] 2025-10-12 20:57:42,033 | INFO     | errors: (none)
[2025-10-12 16:58:47] 2025-10-12 20:57:42,033 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 16:58:47] 2025-10-12 20:57:42,033 | INFO     | pilot state: finished 
[2025-10-12 16:58:47] 2025-10-12 20:57:42,034 | INFO     | transexitcode: 0
[2025-10-12 16:58:47] 2025-10-12 20:57:42,034 | INFO     | exeerrorcode: 0
[2025-10-12 16:58:47] 2025-10-12 20:57:42,034 | INFO     | exeerrordiag: 
[2025-10-12 16:58:47] 2025-10-12 20:57:42,034 | INFO     | exitcode: 0
[2025-10-12 16:58:47] 2025-10-12 20:57:42,034 | INFO     | exitmsg: OK
[2025-10-12 16:58:47] 2025-10-12 20:57:42,034 | INFO     | cpuconsumptiontime: 49222 s
[2025-10-12 16:58:47] 2025-10-12 20:57:42,035 | INFO     | nevents: 400
[2025-10-12 16:58:47] 2025-10-12 20:57:42,035 | INFO     | neventsw: 0
[2025-10-12 16:58:47] 2025-10-12 20:57:42,035 | INFO     | pid: 16133
[2025-10-12 16:58:47] 2025-10-12 20:57:42,035 | INFO     | pgrp: 16133
[2025-10-12 16:58:47] 2025-10-12 20:57:42,035 | INFO     | corecount: 8
[2025-10-12 16:58:47] 2025-10-12 20:57:42,035 | INFO     | event service: False
[2025-10-12 16:58:47] 2025-10-12 20:57:42,036 | INFO     | sizes: {0: 2348855, 1: 2348855, 6: 2349145, 11: 2349173, 6522: 2376258, 6523: 2385256, 6525: 2385440, 6533: 2385634}
[2025-10-12 16:58:47] 2025-10-12 20:57:42,036 | INFO     | --------------------------------------------------
[2025-10-12 16:58:47] 2025-10-12 20:57:42,036 | INFO     | 
[2025-10-12 16:58:47] 2025-10-12 20:57:42,036 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 16:58:47] 2025-10-12 20:57:42,062 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 16:58:47] 2025-10-12 20:57:42,063 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 16:58:47] 2025-10-12 20:57:42,063 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 16:58:47] 2025-10-12 20:57:42,063 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 16:58:47] 2025-10-12 20:57:42,063 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 16:58:47] 2025-10-12 20:57:42,064 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 16:58:47] 2025-10-12 20:57:42,064 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 16:58:47] 2025-10-12 20:57:42,064 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 16:58:47] 2025-10-12 20:57:42,064 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 16:58:47] 2025-10-12 20:57:42,064 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 16:58:47] 2025-10-12 20:57:42,064 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 16:58:47] 2025-10-12 20:57:42,065 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 16:58:47] 2025-10-12 20:57:42,065 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 16:58:47] 2025-10-12 20:57:42,065 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 16:58:47] 2025-10-12 20:57:42,065 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 16:58:47] 2025-10-12 20:57:42,065 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 16:58:47] 2025-10-12 20:57:42,065 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 16:58:47] 2025-10-12 20:57:42,066 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 16:58:47] 2025-10-12 20:57:42,066 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 16:58:47] 2025-10-12 20:57:42,066 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 16:58:47] 2025-10-12 20:57:42,066 | INFO     | job 6840430119 has completed (purged errors)
[2025-10-12 16:58:47] 2025-10-12 20:57:42,066 | INFO     | overall cleanup function is called
[2025-10-12 16:58:47] 2025-10-12 20:57:43,074 | INFO     | --- collectZombieJob: --- 10, [16133]
[2025-10-12 16:58:47] 2025-10-12 20:57:43,074 | INFO     | zombie collector waiting for pid 16133
[2025-10-12 16:58:47] 2025-10-12 20:57:43,075 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 16:58:47] 2025-10-12 20:57:43,075 | INFO     | collected zombie processes
[2025-10-12 16:58:47] 2025-10-12 20:57:43,075 | INFO     | will attempt to kill all subprocesses of pid=16133
[2025-10-12 16:58:47] 2025-10-12 20:57:43,158 | INFO     | process IDs to be killed: [16133] (in reverse order)
[2025-10-12 16:58:47] 2025-10-12 20:57:43,214 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 16:58:47] 2025-10-12 20:57:43,215 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 16:58:47] 2025-10-12 20:57:43,218 | INFO     | did not find any defunct processes belonging to 16133
[2025-10-12 16:58:47] 2025-10-12 20:57:43,221 | INFO     | did not find any defunct processes belonging to 16133
[2025-10-12 16:58:47] 2025-10-12 20:57:43,221 | INFO     | ready for new job
[2025-10-12 16:58:47] 2025-10-12 20:57:43,221 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 16:58:47] 2025-10-12 20:57:43,222 | INFO     | ***************************************
[2025-10-12 16:58:47] 2025-10-12 20:57:43,222 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-12 16:58:47] 2025-10-12 20:57:43,222 | INFO     | ***************************************
[2025-10-12 16:58:47] 2025-10-12 20:57:43,223 | INFO     | 
[2025-10-12 16:58:47] 2025-10-12 20:57:43,223 | INFO     | architecture information:
[2025-10-12 16:58:47] 2025-10-12 20:57:43,224 | INFO     | executing command: cat /etc/os-release
[2025-10-12 16:58:47] 2025-10-12 20:57:43,241 | INFO     | cat /etc/os-release:
[2025-10-12 16:58:47] NAME="CentOS Linux"
[2025-10-12 16:58:47] VERSION="7 (Core)"
[2025-10-12 16:58:47] ID="centos"
[2025-10-12 16:58:47] ID_LIKE="rhel fedora"
[2025-10-12 16:58:47] VERSION_ID="7"
[2025-10-12 16:58:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 16:58:47] ANSI_COLOR="0;31"
[2025-10-12 16:58:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 16:58:47] HOME_URL="https://www.centos.org/"
[2025-10-12 16:58:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 16:58:47] 
[2025-10-12 16:58:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 16:58:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 16:58:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 16:58:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 16:58:47] 
[2025-10-12 16:58:47] 2025-10-12 20:57:43,241 | INFO     | ***************************************
[2025-10-12 16:58:47] 2025-10-12 20:57:43,745 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 16:58:47] 2025-10-12 20:57:43,765 | INFO     | sufficient remaining disk space (18595446784 B)
[2025-10-12 16:58:47] 2025-10-12 20:57:43,765 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 16:58:47] 2025-10-12 20:57:43,766 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 16:58:47] 2025-10-12 20:57:43,766 | INFO     | update_server=False
[2025-10-12 16:58:47] 2025-10-12 20:57:43,766 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 16:58:47] 2025-10-12 20:57:43,766 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:58:47] 2025-10-12 20:57:43,767 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:58:47] 2025-10-12 20:57:43,767 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-12 16:58:47] 2025-10-12 20:57:43,767 | INFO     | aborting loop
[2025-10-12 16:58:47] 2025-10-12 20:57:43,768 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 16:58:47] 2025-10-12 20:57:43,768 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 16:58:47] 2025-10-12 20:57:43,768 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 16:58:47] 2025-10-12 20:57:43,812 | INFO     | all data control threads have been joined
[2025-10-12 16:58:47] 2025-10-12 20:57:43,862 | INFO     | all job control threads have been joined
[2025-10-12 16:58:47] 2025-10-12 20:57:44,488 | INFO     | all payload control threads have been joined
[2025-10-12 16:58:47] 2025-10-12 20:57:44,735 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 16:58:47] 2025-10-12 20:57:44,772 | INFO     | [job] retrieve thread has finished
[2025-10-12 16:58:47] 2025-10-12 20:57:44,772 | INFO     | [job] queue monitor thread has finished
[2025-10-12 16:58:47] 2025-10-12 20:57:44,773 | INFO     | [job] job monitor thread has finished
[2025-10-12 16:58:47] 2025-10-12 20:57:44,815 | INFO     | [data] control thread has finished
[2025-10-12 16:58:47] 2025-10-12 20:57:44,867 | INFO     | [job] control thread has finished
[2025-10-12 16:58:47] 2025-10-12 20:57:44,992 | INFO     | [payload] validate_post thread has finished
[2025-10-12 16:58:47] 2025-10-12 20:57:45,124 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 16:58:47] 2025-10-12 20:57:45,490 | INFO     | [payload] control thread has finished
[2025-10-12 16:58:47] 2025-10-12 20:57:45,656 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 16:58:47] 2025-10-12 20:57:45,726 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 16:58:47] 2025-10-12 20:57:45,789 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 16:58:47] 2025-10-12 20:57:45,876 | INFO     | [job] validate thread has finished
[2025-10-12 16:58:47] 2025-10-12 20:57:45,968 | INFO     | [data] copytool_in thread has finished
[2025-10-12 16:58:47] 2025-10-12 20:57:46,014 | INFO     | [payload] failed_post thread has finished
[2025-10-12 16:58:47] 2025-10-12 20:57:46,103 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 16:58:47] 2025-10-12 20:57:47,130 | INFO     | [data] copytool_out thread has finished
[2025-10-12 16:58:47] 2025-10-12 20:57:48,741 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 16:58:47] 2025-10-12 20:58:41,849 | INFO     | [monitor] cgroup control has ended
[2025-10-12 16:58:47] 2025-10-12 20:58:42,368 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139900722784064)>', '<ExcThread(monitor, started 139899743225600)>']
[2025-10-12 16:58:47] 2025-10-12 20:58:43,053 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 16:58:47] 2025-10-12 20:58:43,053 | INFO     | [monitor] control thread has ended
[2025-10-12 16:58:47] 2025-10-12 20:58:47,393 | INFO     | all workflow threads have been joined
[2025-10-12 16:58:47] 2025-10-12 20:58:47,393 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 16:58:47] 2025-10-12 20:58:47,394 | INFO     | traces error code: 0
[2025-10-12 16:58:47] 2025-10-12 20:58:47,394 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 16:58:47] 2025-10-12 20:58:47,492 [wrapper] ==== pilot stdout END ====
[2025-10-12 16:58:47] 2025-10-12 20:58:47,496 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 16:58:47] 2025-10-12 20:58:47,501 [wrapper] pilotpid: 9763
[2025-10-12 16:58:47] 2025-10-12 20:58:47,505 [wrapper] Pilot exit status: 0
[2025-10-12 16:58:47] 2025-10-12 20:58:47,525 [wrapper] pandaids: 6840430119
[2025-10-12 16:58:47] 2025-10-12 20:58:47,574 [wrapper] cleanup supervisor_pilot 19421 9764
[2025-10-12 16:58:47] 2025-10-12 20:58:47,579 [wrapper] Test setup, not cleaning
[2025-10-12 16:58:47] 2025-10-12 20:58:47,584 [wrapper] apfmon messages muted
[2025-10-12 16:58:47] 2025-10-12 20:58:47,589 [wrapper] ==== wrapper stdout END ====
[2025-10-12 16:58:47] 2025-10-12 20:58:47,594 [wrapper] ==== wrapper stderr END ====
[2025-10-12 16:58:47]  *** Error codes and diagnostics ***
[2025-10-12 16:58:47]     "exeErrorCode": 0,
[2025-10-12 16:58:47]     "exeErrorDiag": "",
[2025-10-12 16:58:47]     "pilotErrorCode": 0,
[2025-10-12 16:58:47]     "pilotErrorDiag": "",
[2025-10-12 16:58:47]  *** Listing of results directory ***
[2025-10-12 16:58:47] total 407616
[2025-10-12 16:58:47] -rw-r--r-- 1 boincer umatlas    563267 Oct  7 03:02 pilot3.tar.gz
[2025-10-12 16:58:47] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 13:41 queuedata.json
[2025-10-12 16:58:47] -rwx------ 1 boincer umatlas     36292 Oct 12 13:42 runpilot2-wrapper.sh
[2025-10-12 16:58:47] -rw-r--r-- 1 boincer umatlas       100 Oct 12 15:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 16:58:47] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 15:08 run_atlas
[2025-10-12 16:58:47] -rw-r--r-- 1 boincer umatlas       105 Oct 12 15:08 job.xml
[2025-10-12 16:58:47] -rw-r--r-- 2 boincer umatlas 219267495 Oct 12 15:08 EVNT.46676267._002520.pool.root.1
[2025-10-12 16:58:47] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 15:08 start_atlas.sh
[2025-10-12 16:58:47] drwxrwx--x 2 boincer umatlas      4096 Oct 12 15:08 shared
[2025-10-12 16:58:47] -rw-r--r-- 2 boincer umatlas    576708 Oct 12 15:08 input.tar.gz
[2025-10-12 16:58:47] -rw-r--r-- 1 boincer umatlas         0 Oct 12 15:08 boinc_lockfile
[2025-10-12 16:58:47] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 15:08 pandaJob.out
[2025-10-12 16:58:47] -rw------- 1 boincer umatlas    975528 Oct 12 15:08 agis_schedconf.cvmfs.json
[2025-10-12 16:58:47] -rw------- 1 boincer umatlas   1560580 Oct 12 15:08 agis_ddmendpoints.agis.ALL.json
[2025-10-12 16:58:47] drwx------ 4 boincer umatlas      4096 Oct 12 15:08 pilot3
[2025-10-12 16:58:47] -rw-r--r-- 1 boincer umatlas      5910 Oct 12 16:54 init_data.xml
[2025-10-12 16:58:47] -rw------- 1 boincer umatlas        95 Oct 12 16:56 pilot_heartbeat.json
[2025-10-12 16:58:47] -rw------- 1 boincer umatlas 191686763 Oct 12 16:57 HITS.46676269._085075.pool.root.1
[2025-10-12 16:58:47] -rw------- 1 boincer umatlas      1050 Oct 12 16:57 memory_monitor_summary.json
[2025-10-12 16:58:47] -rw------- 1 boincer umatlas    340511 Oct 12 16:57 log.46676269._085075.job.log.tgz.1
[2025-10-12 16:58:47] -rw-r--r-- 1 boincer umatlas       530 Oct 12 16:57 boinc_task_state.xml
[2025-10-12 16:58:47] -rw------- 1 boincer umatlas      7847 Oct 12 16:57 heartbeat.json
[2025-10-12 16:58:47] -rw-r--r-- 1 boincer umatlas        27 Oct 12 16:58 wrapper_checkpoint.txt
[2025-10-12 16:58:47] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 16:58 boinc_mmap_file
[2025-10-12 16:58:47] -rw------- 1 boincer umatlas      4552 Oct 12 16:58 pilotlog.txt
[2025-10-12 16:58:47] -rw------- 1 boincer umatlas    924242 Oct 12 16:58 log.46676269._085075.job.log.1
[2025-10-12 16:58:47] -rw------- 1 boincer umatlas       357 Oct 12 16:58 output.list
[2025-10-12 16:58:47] -rw-r--r-- 1 boincer umatlas       620 Oct 12 16:58 runtime_log
[2025-10-12 16:58:47] -rw------- 1 boincer umatlas   1280000 Oct 12 16:58 result.tar.gz
[2025-10-12 16:58:47] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 16:58 runtime_log.err
[2025-10-12 16:58:47] -rw------- 1 boincer umatlas       659 Oct 12 16:58 GgpMDmCGFS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmJZUMDmn9XL6m.diag
[2025-10-12 16:58:47] -rw-r--r-- 1 boincer umatlas     21031 Oct 12 16:58 stderr.txt
[2025-10-12 16:58:47] HITS file was successfully produced:
[2025-10-12 16:58:47] -rw------- 1 boincer umatlas 191686763 Oct 12 16:57 shared/HITS.pool.root.1
[2025-10-12 16:58:47]  *** Contents of shared directory: ***
[2025-10-12 16:58:47] total 403168
[2025-10-12 16:58:47] -rw-r--r-- 2 boincer umatlas 219267495 Oct 12 15:08 ATLAS.root_0
[2025-10-12 16:58:47] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 15:08 start_atlas.sh
[2025-10-12 16:58:47] -rw-r--r-- 2 boincer umatlas    576708 Oct 12 15:08 input.tar.gz
[2025-10-12 16:58:47] -rw------- 1 boincer umatlas 191686763 Oct 12 16:57 HITS.pool.root.1
[2025-10-12 16:58:47] -rw------- 1 boincer umatlas   1280000 Oct 12 16:58 result.tar.gz
16:58:49 (5979): run_atlas exited; CPU time 49232.650364
16:58:49 (5979): called boinc_finish(0)

</stderr_txt>
]]>

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