Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
22:55:40 (26565): wrapper (7.7.26015): starting
22:55:40 (26565): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 22:55:40] Arguments: --nthreads 8
[2025-10-12 22:55:40] Threads: 8
[2025-10-12 22:55:40] Checking for CVMFS
[2025-10-12 22:55:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 22:55:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 22:55:41] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 22:55:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 22:55:41] 2.11.0.0 4746 1870 57136 151636 0 187 1989625 4096001 1726 130560 0 566058 98.842 725309 1133 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-12 22:55:41] CVMFS is ok
[2025-10-12 22:55:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 22:55:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 22:55:41] Further information can be found at the LHC@home message board.
[2025-10-12 22:55:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 22:55:41] Checking for apptainer binary...
[2025-10-12 22:55:41] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-12 22:55:41] apptainer is not installed, using version from CVMFS
[2025-10-12 22:55:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 22:55:41] WARNING: Environment variable TMPDIR already has value [/tmp/job_10529263/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node101
[2025-10-12 22:55:41] apptainer works
[2025-10-12 22:55:41] Set ATHENA_PROC_NUMBER=8
[2025-10-12 22:55:41] Set ATHENA_CORE_NUMBER=8
[2025-10-12 22:55:41] Starting ATLAS job with PandaID=6840181290
[2025-10-12 22:55:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10529263/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:43:05]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:43:05]  is_altstaged=None
[2025-10-12 23:43:05]  is_tar=False
[2025-10-12 23:43:05]  lfn=log.46676269._080249.job.log.tgz.1
[2025-10-12 23:43:05]  mtime=0
[2025-10-12 23:43:05]  protocol_id=None
[2025-10-12 23:43:05]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 23:43:05]  replicas=None
[2025-10-12 23:43:05]  scope=mc23_13p6TeV
[2025-10-12 23:43:05]  status=None
[2025-10-12 23:43:05]  status_code=0
[2025-10-12 23:43:05]  storage_token=
[2025-10-12 23:43:05]  surl=/tmp/job_10529263/atlas/pilot/slots/0/PanDA_Pilot-6840181290/log.46676269._080249.job.log.tgz.1
[2025-10-12 23:43:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4f/67/log.46676269._080249.job.log.tgz.1
[2025-10-12 23:43:05]  workdir=None
[2025-10-12 23:43:05] ]
[2025-10-12 23:43:05] 2025-10-12 21:42:31,348 | INFO     | transferring file log.46676269._080249.job.log.tgz.1 from /tmp/job_10529263/atlas/pilot/slots/0/PanDA_Pilot-6840181290/log.46676269._080249.job.log.tgz.1 to /tmp/j
[2025-10-12 23:43:05] 2025-10-12 21:42:31,348 | INFO     | executing command: /usr/bin/env mv /tmp/job_10529263/atlas/pilot/slots/0/PanDA_Pilot-6840181290/log.46676269._080249.job.log.tgz.1 /tmp/job_10529263/atlas/pilot/sl
[2025-10-12 23:43:05] 2025-10-12 21:42:31,356 | INFO     | adding to output.list: log.46676269._080249.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4f/67/log.46676269._080249.job.log.tg
[2025-10-12 23:43:05] 2025-10-12 21:42:31,356 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 23:43:05] 2025-10-12 21:42:31,356 | INFO     | summary of transferred files:
[2025-10-12 23:43:05] 2025-10-12 21:42:31,356 | INFO     |  -- lfn=log.46676269._080249.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 23:43:05] 2025-10-12 21:42:31,356 | INFO     | stage-out finished correctly
[2025-10-12 23:43:05] 2025-10-12 21:42:32,027 | INFO     | time since job start (2806s) is within the limit (172800.0s)
[2025-10-12 23:43:05] 2025-10-12 21:42:32,405 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 23:43:05] 2025-10-12 21:42:32,452 | INFO     | job 6840181290 has state=finished
[2025-10-12 23:43:05] 2025-10-12 21:42:32,452 | INFO     | preparing for final server update for job 6840181290 in state='finished'
[2025-10-12 23:43:05] 2025-10-12 21:42:32,453 | INFO     | this job has now completed (state=finished)
[2025-10-12 23:43:05] 2025-10-12 21:42:32,453 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 23:43:05] 2025-10-12 21:42:32,453 | INFO     | log transfer has been attempted: DONE
[2025-10-12 23:43:05] 2025-10-12 21:42:32,453 | INFO     | job 6840181290 has finished - writing final server update
[2025-10-12 23:43:05] 2025-10-12 21:42:32,453 | INFO     | total number of processed events: 400 (read)
[2025-10-12 23:43:05] 2025-10-12 21:42:32,453 | INFO     | executing command: lscpu
[2025-10-12 23:43:05] 2025-10-12 21:42:32,483 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 23:43:05] 2025-10-12 21:42:33,036 | INFO     | monitor loop #208: job 0:6840181290 is in state 'finished'
[2025-10-12 23:43:05] 2025-10-12 21:42:33,037 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:43:05] 2025-10-12 21:42:33,948 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 23:43:05] 2025-10-12 21:42:33,952 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2720.0946718749997
[2025-10-12 23:43:05] 2025-10-12 21:42:33,958 | INFO     | using path: /tmp/job_10529263/atlas/pilot/slots/0/PanDA_Pilot-6840181290/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:43:05] 2025-10-12 21:42:33,958 | INFO     | extracted standard info from prmon json
[2025-10-12 23:43:05] 2025-10-12 21:42:33,958 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 23:43:05] 2025-10-12 21:42:33,958 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 23:43:05] 2025-10-12 21:42:33,958 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 23:43:05] 2025-10-12 21:42:33,958 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 23:43:05] 2025-10-12 21:42:33,959 | INFO     | fitting pss+swap vs Time
[2025-10-12 23:43:05] 2025-10-12 21:42:33,959 | INFO     | sum of square deviations: 18381740.0
[2025-10-12 23:43:05] 2025-10-12 21:42:33,959 | INFO     | sum of deviations: -469670170.99999994
[2025-10-12 23:43:05] 2025-10-12 21:42:33,959 | INFO     | mean x: 1760304027.0
[2025-10-12 23:43:05] 2025-10-12 21:42:33,959 | INFO     | mean y: 2546576.6923076925
[2025-10-12 23:43:05] 2025-10-12 21:42:33,959 | INFO     | -- intersect: 44979915061.56254
[2025-10-12 23:43:05] 2025-10-12 21:42:33,959 | INFO     | intersect: 44979915061.56254
[2025-10-12 23:43:05] 2025-10-12 21:42:33,959 | INFO     | chi2: 0.0018038552999486209
[2025-10-12 23:43:05] 2025-10-12 21:42:33,960 | INFO     | -- intersect: 44979915061.56254
[2025-10-12 23:43:05] 2025-10-12 21:42:33,960 | INFO     | current memory leak: -25.55 B/s (using 39 data points, chi2=0.00)
[2025-10-12 23:43:05] 2025-10-12 21:42:33,960 | INFO     | could have reported an average CPU frequency of 2623 MHz (5 samples)
[2025-10-12 23:43:05] 2025-10-12 21:42:33,960 | INFO     | ..............................
[2025-10-12 23:43:05] 2025-10-12 21:42:33,960 | INFO     | . Timing measurements:
[2025-10-12 23:43:05] 2025-10-12 21:42:33,960 | INFO     | . get job = 0 s
[2025-10-12 23:43:05] 2025-10-12 21:42:33,960 | INFO     | . initial setup = 1 s
[2025-10-12 23:43:05] 2025-10-12 21:42:33,960 | INFO     | . payload setup = 2 s
[2025-10-12 23:43:05] 2025-10-12 21:42:33,960 | INFO     | . stage-in = 0 s
[2025-10-12 23:43:05] 2025-10-12 21:42:33,960 | INFO     | . payload execution = 2786 s
[2025-10-12 23:43:05] 2025-10-12 21:42:33,960 | INFO     | . stage-out = 0 s
[2025-10-12 23:43:05] 2025-10-12 21:42:33,960 | INFO     | . log creation = 0 s
[2025-10-12 23:43:05] 2025-10-12 21:42:33,960 | INFO     | ..............................
[2025-10-12 23:43:05] 2025-10-12 21:42:34,010 | INFO     | 
[2025-10-12 23:43:05] 2025-10-12 21:42:34,010 | INFO     | job summary report
[2025-10-12 23:43:05] 2025-10-12 21:42:34,011 | INFO     | --------------------------------------------------
[2025-10-12 23:43:05] 2025-10-12 21:42:34,011 | INFO     | PanDA job id: 6840181290
[2025-10-12 23:43:05] 2025-10-12 21:42:34,011 | INFO     | task id: 46676269
[2025-10-12 23:43:05] 2025-10-12 21:42:34,011 | INFO     | errors: (none)
[2025-10-12 23:43:05] 2025-10-12 21:42:34,011 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 23:43:05] 2025-10-12 21:42:34,011 | INFO     | pilot state: finished 
[2025-10-12 23:43:05] 2025-10-12 21:42:34,011 | INFO     | transexitcode: 0
[2025-10-12 23:43:05] 2025-10-12 21:42:34,011 | INFO     | exeerrorcode: 0
[2025-10-12 23:43:05] 2025-10-12 21:42:34,011 | INFO     | exeerrordiag: 
[2025-10-12 23:43:05] 2025-10-12 21:42:34,011 | INFO     | exitcode: 0
[2025-10-12 23:43:05] 2025-10-12 21:42:34,011 | INFO     | exitmsg: OK
[2025-10-12 23:43:05] 2025-10-12 21:42:34,011 | INFO     | cpuconsumptiontime: 20553 s
[2025-10-12 23:43:05] 2025-10-12 21:42:34,011 | INFO     | nevents: 400
[2025-10-12 23:43:05] 2025-10-12 21:42:34,011 | INFO     | neventsw: 0
[2025-10-12 23:43:05] 2025-10-12 21:42:34,011 | INFO     | pid: 7573
[2025-10-12 23:43:05] 2025-10-12 21:42:34,011 | INFO     | pgrp: 7573
[2025-10-12 23:43:05] 2025-10-12 21:42:34,011 | INFO     | corecount: 8
[2025-10-12 23:43:05] 2025-10-12 21:42:34,011 | INFO     | event service: False
[2025-10-12 23:43:05] 2025-10-12 21:42:34,011 | INFO     | sizes: {0: 2348882, 2: 2349144, 11: 2349172, 2792: 2374608, 2793: 2383636, 2794: 2383692, 2796: 2384046}
[2025-10-12 23:43:05] 2025-10-12 21:42:34,011 | INFO     | --------------------------------------------------
[2025-10-12 23:43:05] 2025-10-12 21:42:34,011 | INFO     | 
[2025-10-12 23:43:05] 2025-10-12 21:42:34,011 | INFO     | executing command: ls -lF /tmp/job_10529263/atlas/pilot/slots/0
[2025-10-12 23:43:05] 2025-10-12 21:42:34,021 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 23:43:05] 2025-10-12 21:42:34,021 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 23:43:05] 2025-10-12 21:42:34,021 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 23:43:05] 2025-10-12 21:42:34,021 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 23:43:05] 2025-10-12 21:42:34,021 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 23:43:05] 2025-10-12 21:42:34,021 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 23:43:05] 2025-10-12 21:42:34,021 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 23:43:05] 2025-10-12 21:42:34,021 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 23:43:05] 2025-10-12 21:42:34,021 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 23:43:05] 2025-10-12 21:42:34,021 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 23:43:05] 2025-10-12 21:42:34,021 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 23:43:05] 2025-10-12 21:42:34,021 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 23:43:05] 2025-10-12 21:42:34,021 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 23:43:05] 2025-10-12 21:42:34,021 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 23:43:05] 2025-10-12 21:42:34,021 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 23:43:05] 2025-10-12 21:42:34,022 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:43:05] 2025-10-12 21:42:34,022 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:43:05] 2025-10-12 21:42:34,022 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:43:05] 2025-10-12 21:42:34,022 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:43:05] 2025-10-12 21:42:34,022 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:43:05] 2025-10-12 21:42:34,022 | INFO     | job 6840181290 has completed (purged errors)
[2025-10-12 23:43:05] 2025-10-12 21:42:34,022 | INFO     | overall cleanup function is called
[2025-10-12 23:43:05] 2025-10-12 21:42:35,028 | INFO     | --- collectZombieJob: --- 10, [7573]
[2025-10-12 23:43:05] 2025-10-12 21:42:35,028 | INFO     | zombie collector waiting for pid 7573
[2025-10-12 23:43:05] 2025-10-12 21:42:35,028 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:43:05] 2025-10-12 21:42:35,028 | INFO     | collected zombie processes
[2025-10-12 23:43:05] 2025-10-12 21:42:35,028 | INFO     | will attempt to kill all subprocesses of pid=7573
[2025-10-12 23:43:05] 2025-10-12 21:42:35,132 | INFO     | process IDs to be killed: [7573] (in reverse order)
[2025-10-12 23:43:05] 2025-10-12 21:42:35,169 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:43:05] 2025-10-12 21:42:35,170 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:43:05] 2025-10-12 21:42:35,173 | INFO     | did not find any defunct processes belonging to 7573
[2025-10-12 23:43:05] 2025-10-12 21:42:35,176 | INFO     | did not find any defunct processes belonging to 7573
[2025-10-12 23:43:05] 2025-10-12 21:42:35,176 | INFO     | ready for new job
[2025-10-12 23:43:05] 2025-10-12 21:42:35,177 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:43:05] 2025-10-12 21:42:35,177 | INFO     | ***************************************
[2025-10-12 23:43:05] 2025-10-12 21:42:35,177 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:43:05] 2025-10-12 21:42:35,177 | INFO     | ***************************************
[2025-10-12 23:43:05] 2025-10-12 21:42:35,177 | INFO     | 
[2025-10-12 23:43:05] 2025-10-12 21:42:35,191 | INFO     | architecture information:
[2025-10-12 23:43:05] 2025-10-12 21:42:35,191 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:43:05] 2025-10-12 21:42:35,196 | INFO     | cat /etc/os-release:
[2025-10-12 23:43:05] NAME="CentOS Linux"
[2025-10-12 23:43:05] VERSION="7 (Core)"
[2025-10-12 23:43:05] ID="centos"
[2025-10-12 23:43:05] ID_LIKE="rhel fedora"
[2025-10-12 23:43:05] VERSION_ID="7"
[2025-10-12 23:43:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:43:05] ANSI_COLOR="0;31"
[2025-10-12 23:43:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:43:05] HOME_URL="https://www.centos.org/"
[2025-10-12 23:43:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:43:05] 
[2025-10-12 23:43:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:43:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:43:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:43:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:43:05] 
[2025-10-12 23:43:05] 2025-10-12 21:42:35,196 | INFO     | ***************************************
[2025-10-12 23:43:05] 2025-10-12 21:42:35,699 | INFO     | executing command: df -mP /tmp/job_10529263/atlas/pilot/slots/0
[2025-10-12 23:43:05] 2025-10-12 21:42:35,705 | INFO     | sufficient remaining disk space (226680111104 B)
[2025-10-12 23:43:05] 2025-10-12 21:42:35,705 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:43:05] 2025-10-12 21:42:35,705 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:43:05] 2025-10-12 21:42:35,705 | INFO     | update_server=False
[2025-10-12 23:43:05] 2025-10-12 21:42:35,705 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:43:05] 2025-10-12 21:42:35,705 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:43:05] 2025-10-12 21:42:35,715 | INFO     | all data control threads have been joined
[2025-10-12 23:43:05] 2025-10-12 21:42:36,012 | INFO     | all payload control threads have been joined
[2025-10-12 23:43:05] 2025-10-12 21:42:36,544 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:43:05] 2025-10-12 21:42:36,544 | INFO     | aborting loop
[2025-10-12 23:43:05] 2025-10-12 21:42:36,711 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:43:05] 2025-10-12 21:42:36,711 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:43:05] 2025-10-12 21:42:36,720 | INFO     | [data] control thread has finished
[2025-10-12 23:43:05] 2025-10-12 21:42:36,913 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:43:05] 2025-10-12 21:42:37,017 | INFO     | [payload] control thread has finished
[2025-10-12 23:43:05] 2025-10-12 21:42:37,323 | INFO     | all job control threads have been joined
[2025-10-12 23:43:05] 2025-10-12 21:42:37,467 | INFO     | [job] validate thread has finished
[2025-10-12 23:43:05] 2025-10-12 21:42:37,550 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:43:05] 2025-10-12 21:42:37,654 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:43:05] 2025-10-12 21:42:37,721 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:43:05] 2025-10-12 21:42:38,007 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:43:05] 2025-10-12 21:42:38,096 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:43:05] 2025-10-12 21:42:38,183 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:43:05] 2025-10-12 21:42:38,207 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:43:05] 2025-10-12 21:42:38,328 | INFO     | [job] control thread has finished
[2025-10-12 23:43:05] 2025-10-12 21:42:38,457 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:43:05] 2025-10-12 21:42:38,918 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:43:05] 2025-10-12 21:42:42,463 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:43:05] 2025-10-12 21:42:46,458 | INFO     | job.realtimelogging is not enabled
[2025-10-12 23:43:05] 2025-10-12 21:42:47,464 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:43:05] 2025-10-12 21:42:50,392 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:43:05] 2025-10-12 21:42:50,631 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060466944)>']
[2025-10-12 23:43:05] 2025-10-12 21:42:55,654 | INFO     | all workflow threads have been joined
[2025-10-12 23:43:05] 2025-10-12 21:42:55,654 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:43:05] 2025-10-12 21:42:55,654 | INFO     | traces error code: 0
[2025-10-12 23:43:05] 2025-10-12 21:42:55,654 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:43:05] 2025-10-12 21:43:05,219 | INFO     | PID=31325 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 23:43:05] 2025-10-12 21:43:05,219 | INFO     | .. there are 4 such processes running
[2025-10-12 23:43:05] 2025-10-12 21:43:05,219 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:43:05] 2025-10-12 21:43:05,219 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:43:05] 2025-10-12 21:43:05,219 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:43:05] 2025-10-12 21:43:05,219 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:43:05] 2025-10-12 21:43:05,219 | INFO     | [monitor] control thread has ended
[2025-10-12 23:43:05] 2025-10-12 21:43:05,274 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:43:05] 2025-10-12 21:43:05,275 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:43:05] 2025-10-12 21:43:05,276 [wrapper] pilotpid: 31325
[2025-10-12 23:43:05] 2025-10-12 21:43:05,276 [wrapper] Pilot exit status: 0
[2025-10-12 23:43:05] 2025-10-12 21:43:05,279 [wrapper] pandaids: 6840181290
[2025-10-12 23:43:05] 2025-10-12 21:43:05,303 [wrapper] cleanup supervisor_pilot 27567 31326
[2025-10-12 23:43:05] 2025-10-12 21:43:05,304 [wrapper] Test setup, not cleaning
[2025-10-12 23:43:05] 2025-10-12 21:43:05,305 [wrapper] apfmon messages muted
[2025-10-12 23:43:05] 2025-10-12 21:43:05,306 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:43:05] 2025-10-12 21:43:05,307 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:43:05]  *** Error codes and diagnostics ***
[2025-10-12 23:43:05]     "exeErrorCode": 0,
[2025-10-12 23:43:05]     "exeErrorDiag": "",
[2025-10-12 23:43:05]     "pilotErrorCode": 0,
[2025-10-12 23:43:05]     "pilotErrorDiag": "",
[2025-10-12 23:43:05]  *** Listing of results directory ***
[2025-10-12 23:43:05] total 417764
[2025-10-12 23:43:05] -rw------- 1 mf493845 unix-user    557409 Oct 12 15:55 pilot3.tar.gz
[2025-10-12 23:43:05] -rwx------ 1 mf493845 unix-user     36292 Oct 12 16:05 runpilot2-wrapper.sh
[2025-10-12 23:43:05] -rw------- 1 mf493845 unix-user      5112 Oct 12 16:05 queuedata.json
[2025-10-12 23:43:05] -rw------- 1 mf493845 unix-user       100 Oct 12 21:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:43:05] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct 12 21:59 run_atlas
[2025-10-12 23:43:05] -rw------- 1 mf493845 unix-user       105 Oct 12 21:59 job.xml
[2025-10-12 23:43:05] -rw-r--r-- 2 mf493845 unix-user 221626348 Oct 12 22:55 EVNT.46676267._002004.pool.root.1
[2025-10-12 23:43:05] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 12 22:55 start_atlas.sh
[2025-10-12 23:43:05] drwxrwx--x 2 mf493845 unix-user       100 Oct 12 22:55 shared
[2025-10-12 23:43:05] -rw-r--r-- 2 mf493845 unix-user    569684 Oct 12 22:55 input.tar.gz
[2025-10-12 23:43:05] -rw------- 1 mf493845 unix-user      6394 Oct 12 22:55 init_data.xml
[2025-10-12 23:43:05] -rw------- 1 mf493845 unix-user         0 Oct 12 22:55 boinc_setup_complete
[2025-10-12 23:43:05] -rw------- 1 mf493845 unix-user      8192 Oct 12 22:55 boinc_mmap_file
[2025-10-12 23:43:05] -rw------- 1 mf493845 unix-user         0 Oct 12 22:55 boinc_lockfile
[2025-10-12 23:43:05] -rw------- 1 mf493845 unix-user      2549 Oct 12 22:55 pandaJob.out
[2025-10-12 23:43:05] -rw------- 1 mf493845 unix-user    975536 Oct 12 22:55 agis_schedconf.cvmfs.json
[2025-10-12 23:43:05] -rw------- 1 mf493845 unix-user   1560580 Oct 12 22:55 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:43:05] drwx------ 5 mf493845 unix-user       440 Oct 12 22:55 pilot3
[2025-10-12 23:43:05] -rw------- 1 mf493845 unix-user 200793236 Oct 12 23:42 HITS.46676269._080249.pool.root.1
[2025-10-12 23:43:05] -rw------- 1 mf493845 unix-user        95 Oct 12 23:42 pilot_heartbeat.json
[2025-10-12 23:43:05] -rw------- 1 mf493845 unix-user      1015 Oct 12 23:42 memory_monitor_summary.json
[2025-10-12 23:43:05] -rw------- 1 mf493845 unix-user    299048 Oct 12 23:42 log.46676269._080249.job.log.tgz.1
[2025-10-12 23:43:05] -rw------- 1 mf493845 unix-user      7769 Oct 12 23:42 heartbeat.json
[2025-10-12 23:43:05] -rw------- 1 mf493845 unix-user       820 Oct 12 23:43 pilotlog.txt
[2025-10-12 23:43:05] -rw------- 1 mf493845 unix-user    446677 Oct 12 23:43 log.46676269._080249.job.log.1
[2025-10-12 23:43:05] -rw------- 1 mf493845 unix-user       357 Oct 12 23:43 output.list
[2025-10-12 23:43:05] -rw------- 1 mf493845 unix-user       620 Oct 12 23:43 runtime_log
[2025-10-12 23:43:05] -rw------- 1 mf493845 unix-user    768000 Oct 12 23:43 result.tar.gz
[2025-10-12 23:43:05] -rw------- 1 mf493845 unix-user      9076 Oct 12 23:43 runtime_log.err
[2025-10-12 23:43:05] -rw------- 1 mf493845 unix-user       641 Oct 12 23:43 FGzKDmesBS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmy2TMDmBiBX8m.diag
[2025-10-12 23:43:05] -rw------- 1 mf493845 unix-user     21897 Oct 12 23:43 stderr.txt
[2025-10-12 23:43:05] HITS file was successfully produced:
[2025-10-12 23:43:05] -rw------- 1 mf493845 unix-user 200793236 Oct 12 23:42 shared/HITS.pool.root.1
[2025-10-12 23:43:05]  *** Contents of shared directory: ***
[2025-10-12 23:43:05] total 413848
[2025-10-12 23:43:05] -rw-r--r-- 2 mf493845 unix-user 221626348 Oct 12 22:55 ATLAS.root_0
[2025-10-12 23:43:05] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 12 22:55 start_atlas.sh
[2025-10-12 23:43:05] -rw-r--r-- 2 mf493845 unix-user    569684 Oct 12 22:55 input.tar.gz
[2025-10-12 23:43:05] -rw------- 1 mf493845 unix-user 200793236 Oct 12 23:42 HITS.pool.root.1
[2025-10-12 23:43:05] -rw------- 1 mf493845 unix-user    768000 Oct 12 23:43 result.tar.gz
23:43:07 (26565): run_atlas exited; CPU time 20592.341844
23:43:07 (26565): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN