Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-12 15:07:43 (44324): vboxwrapper version 26210
2025-10-12 15:07:43 (44324): BOINC client version: 8.2.4
2025-10-12 15:07:43 (44324): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-10-12 15:07:43 (44324): Successfully copied 'init_data.xml' to the shared directory.
2025-10-12 15:07:44 (44324): Create VM. (boinc_d76aebe8fbc67b1d, slot#0)
2025-10-12 15:07:44 (44324): Setting Memory Size for VM. (4400MB)
2025-10-12 15:07:44 (44324): Setting CPU Count for VM. (4)
2025-10-12 15:07:45 (44324): Setting Chipset Options for VM.
2025-10-12 15:07:45 (44324): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-12 15:07:45 (44324): Setting Boot Options for VM.
2025-10-12 15:07:46 (44324): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-12 15:07:46 (44324): Enabling VM Network Access.
2025-10-12 15:07:46 (44324): Disabling USB Support for VM.
2025-10-12 15:07:46 (44324): Disabling COM Port Support for VM.
2025-10-12 15:07:47 (44324): Disabling LPT Port Support for VM.
2025-10-12 15:07:47 (44324): Disabling Audio Support for VM.
2025-10-12 15:07:47 (44324): Disabling Clipboard Support for VM.
2025-10-12 15:07:47 (44324): Disabling Drag and Drop Support for VM.
2025-10-12 15:07:48 (44324): Adding storage controller(s) to VM.
2025-10-12 15:07:48 (44324): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-12 15:07:48 (44324): Adding VirtualBox Guest Additions to VM.
2025-10-12 15:07:49 (44324): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-12 15:07:49 (44324): forwarding host port 59210 to guest port 80
2025-10-12 15:07:49 (44324): Enabling remote desktop for VM.
2025-10-12 15:07:50 (44324): Enabling shared directory for VM.
2025-10-12 15:07:51 (44324): Starting VM using VBoxManage interface. (boinc_d76aebe8fbc67b1d, slot#0)
2025-10-12 15:07:55 (44324): Successfully started VM. (PID = '36832')
2025-10-12 15:07:55 (44324): Reporting VM Process ID to BOINC.
2025-10-12 15:07:55 (44324): Guest Log: BIOS: VirtualBox 7.2.2
2025-10-12 15:07:55 (44324): Guest Log: CPUID EDX: 0x178bfbff
2025-10-12 15:07:55 (44324): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-12 15:07:55 (44324): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-12 15:07:55 (44324): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-12 15:07:55 (44324): Detected: Web Application Enabled (http://localhost:59210)
2025-10-12 15:07:55 (44324): Detected: Remote Desktop Enabled (localhost:59211)
2025-10-12 15:07:55 (44324): Preference change detected
2025-10-12 15:07:55 (44324): Setting CPU throttle for VM. (100%)
2025-10-12 15:07:55 (44324): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-12 15:07:57 (44324): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-12 15:07:57 (44324): Guest Log: BIOS: Booting from Hard Disk...
2025-10-12 15:07:59 (44324): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-12 15:07:59 (44324): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-12 15:07:59 (44324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-12 15:08:03 (44324): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-12 15:08:03 (44324): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-12 15:08:06 (44324): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-12 15:08:06 (44324): Guest Log: 00:00:00.000062 main     Log opened 2025-10-12T15:08:04.236197000Z
2025-10-12 15:08:06 (44324): Guest Log: 00:00:00.000144 main     OS Product: Linux
2025-10-12 15:08:06 (44324): Guest Log: 00:00:00.000158 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-12 15:08:06 (44324): Guest Log: 00:00:00.000170 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-12 15:08:06 (44324): Guest Log: 00:00:00.000181 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-12 15:08:06 (44324): Guest Log: 00:00:00.000181 main     Process ID: 1304
2025-10-12 15:08:06 (44324): Guest Log: 00:00:00.000181 main     Package type: LINUX_64BITS_GENERIC
2025-10-12 15:08:06 (44324): Guest Log: 00:00:00.000653 main     5.2.32 r132073 started. Verbose level = 0
2025-10-12 15:08:06 (44324): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-12 15:08:06 (44324): Guest Log: [INFO] Mounting shared directory
2025-10-12 15:08:06 (44324): Guest Log: [INFO] Checking for init_data.xml
2025-10-12 15:08:09 (44324): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-12 15:08:09 (44324): Guest Log: [INFO] Detected branch: prod
2025-10-12 15:08:10 (44324): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-12 15:08:10 (44324): Guest Log: Copying input files
2025-10-12 15:08:10 (44324): Guest Log: Copied input files into RunAtlas.
2025-10-12 15:08:10 (44324): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-12 15:08:10 (44324): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-12 15:08:10 (44324): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-12 15:08:10 (44324): Guest Log: Further information can be found at the LHC@home message board.
2025-10-12 15:08:16 (44324): Guest Log: 00:00:10.001472 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 134 659 000ns (GuestNow=1 760 296 095 372 101 000 ns GuestLast=1 760 281 684 237 442 000 ns fSetTimeLastLoop=true )
2025-10-12 15:08:19 (44324): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-12 15:08:19 (44324): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-12 15:08:19 (44324): Guest Log: 2.6.3.0 1582 0 30072 151633 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-12 15:08:20 (44324): Guest Log: copied the webapp to /var/www
2025-10-12 15:08:20 (44324): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-12 15:08:20 (44324): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-12 15:08:20 (44324): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-12 15:08:20 (44324): Guest Log:  *** Starting ATLAS job. (PandaID=6840081748 taskID=46676269) ***
2025-10-12 16:48:00 (44324): Status Report: Elapsed Time: '6000.000000'
2025-10-12 16:48:00 (44324): Status Report: CPU Time: '22772.500000'
2025-10-12 16:57:16 (44324): Guest Log:  *** Job finished ***
2025-10-12 16:57:16 (44324): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-12 16:57:16 (44324): Guest Log: 2025-10-12 20:57:02,472 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-12 16:57:16 (44324): Guest Log: 2025-10-12 20:57:02,472 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-12 16:57:16 (44324): Guest Log: 2025-10-12 20:57:06,323 | INFO     | [monitor] cgroup control has ended
2025-10-12 16:57:16 (44324): Guest Log: 2025-10-12 20:57:07,026 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139870557505344)>', '<ExcThread(monitor, started 139869745563392)>']
2025-10-12 16:57:16 (44324): Guest Log: 2025-10-12 20:57:07,324 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-12 16:57:16 (44324): Guest Log: 2025-10-12 20:57:07,325 | INFO     | [monitor] control thread has ended
2025-10-12 16:57:16 (44324): Guest Log: 2025-10-12 20:57:12,072 | INFO     | all workflow threads have been joined
2025-10-12 16:57:16 (44324): Guest Log: 2025-10-12 20:57:12,073 | INFO     | end of generic workflow (traces error code: 0)
2025-10-12 16:57:16 (44324): Guest Log: 2025-10-12 20:57:12,073 | INFO     | traces error code: 0
2025-10-12 16:57:16 (44324): Guest Log: 2025-10-12 20:57:12,073 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-12 16:57:16 (44324): Guest Log: 2025-10-12 20:57:12,191 [wrapper] ==== pilot stdout END ====
2025-10-12 16:57:16 (44324): Guest Log: 2025-10-12 20:57:12,194 [wrapper] ==== wrapper stdout RESUME ====
2025-10-12 16:57:16 (44324): Guest Log: 2025-10-12 20:57:12,196 [wrapper] pilotpid: 5963
2025-10-12 16:57:16 (44324): Guest Log: 2025-10-12 20:57:12,201 [wrapper] Pilot exit status: 0
2025-10-12 16:57:16 (44324): Guest Log: 2025-10-12 20:57:12,308 [wrapper] pandaids: 6840081748
2025-10-12 16:57:16 (44324): Guest Log: 2025-10-12 20:57:12,346 [wrapper] cleanup supervisor_pilot  4699 5964
2025-10-12 16:57:16 (44324): Guest Log: 2025-10-12 20:57:12,355 [wrapper] Test setup, not cleaning
2025-10-12 16:57:16 (44324): Guest Log: 2025-10-12 20:57:12,369 [wrapper] apfmon messages muted
2025-10-12 16:57:16 (44324): Guest Log: 2025-10-12 20:57:12,374 [wrapper] ==== wrapper stdout END ====
2025-10-12 16:57:16 (44324): Guest Log: 2025-10-12 20:57:12,378 [wrapper] ==== wrapper stderr END ====
2025-10-12 16:57:16 (44324): Guest Log:  *** Error codes and diagnostics ***
2025-10-12 16:57:16 (44324): Guest Log:     "exeErrorCode": 0,
2025-10-12 16:57:16 (44324): Guest Log:     "exeErrorDiag": "",
2025-10-12 16:57:16 (44324): Guest Log:     "pilotErrorCode": 0,
2025-10-12 16:57:16 (44324): Guest Log:     "pilotErrorDiag": "",
2025-10-12 16:57:16 (44324): Guest Log:  *** Listing of results directory ***
2025-10-12 16:57:16 (44324): Guest Log: total 194600
2025-10-12 16:57:16 (44324): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 12 13:45 pilot3.tar.gz
2025-10-12 16:57:16 (44324): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 12 13:50 queuedata.json
2025-10-12 16:57:16 (44324): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 12 13:50 runpilot2-wrapper.sh
2025-10-12 16:57:16 (44324): Guest Log: -rwxr-xr-x. 1 atlas atlas      8886 Oct 12 19:08 init_data.xml
2025-10-12 16:57:16 (44324): Guest Log: -rwxr-xr-x. 1 atlas atlas    569683 Oct 12 19:08 input.tar.gz
2025-10-12 16:57:16 (44324): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 12 19:08 start_atlas.sh
2025-10-12 16:57:16 (44324): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 12 19:08 EVNT.46676267._004037.pool.root.1 -> /data/./ATLAS.root_0
2025-10-12 16:57:16 (44324): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 12 19:08 pandaJob.out
2025-10-12 16:57:16 (44324): Guest Log: -rw-------. 1 atlas atlas    975528 Oct 12 19:08 agis_schedconf.cvmfs.json
2025-10-12 16:57:16 (44324): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 12 19:08 agis_ddmendpoints.agis.ALL.json
2025-10-12 16:57:16 (44324): Guest Log: drwx------. 5 atlas atlas      4096 Oct 12 19:08 pilot3
2025-10-12 16:57:16 (44324): Guest Log: -rw-------. 1 atlas atlas 193069666 Oct 12 20:55 HITS.46676269._079903.pool.root.1
2025-10-12 16:57:16 (44324): Guest Log: -rw-------. 1 atlas atlas      1026 Oct 12 20:56 memory_monitor_summary.json
2025-10-12 16:57:16 (44324): Guest Log: -rw-------. 1 atlas atlas    290020 Oct 12 20:56 log.46676269._079903.job.log.tgz.1
2025-10-12 16:57:16 (44324): Guest Log: -rw-------. 1 atlas atlas      7786 Oct 12 20:56 heartbeat.json
2025-10-12 16:57:16 (44324): Guest Log: -rw-------. 1 atlas atlas        95 Oct 12 20:57 pilot_heartbeat.json
2025-10-12 16:57:16 (44324): Guest Log: -rw-------. 1 atlas atlas      4805 Oct 12 20:57 pilotlog.txt
2025-10-12 16:57:16 (44324): Guest Log: -rw-------. 1 atlas atlas    893691 Oct 12 20:57 log.46676269._079903.job.log.1
2025-10-12 16:57:16 (44324): Guest Log: -rw-------. 1 atlas atlas       357 Oct 12 20:57 output.list
2025-10-12 16:57:16 (44324): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 12 20:57 runtime_log
2025-10-12 16:57:16 (44324): Guest Log: -rw-------. 1 atlas atlas   1198080 Oct 12 20:57 result.tar.gz
2025-10-12 16:57:16 (44324): Guest Log: -rw-------. 1 atlas atlas       665 Oct 12 20:57 ZGnKDmbeBS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmb6jNDmDyC2km.diag
2025-10-12 16:57:16 (44324): Guest Log: -rw-r--r--. 1 atlas atlas      8681 Oct 12 20:57 runtime_log.err
2025-10-12 16:57:16 (44324): Guest Log: Looking for outputfile HITS.46676269._079903.pool.root.1
2025-10-12 16:57:16 (44324): Guest Log: HITS file was successfully produced
2025-10-12 16:57:16 (44324): Guest Log: -rw-------. 1 atlas atlas 193069666 Oct 12 20:55 /home/atlas/RunAtlas/HITS.46676269._079903.pool.root.1
2025-10-12 16:57:17 (44324): Guest Log: Successfully finished the ATLAS job!
2025-10-12 16:57:17 (44324): Guest Log: Copying the results back to the shared directory!
2025-10-12 16:57:17 (44324): Guest Log:  *** Contents of shared directory: ***
2025-10-12 16:57:17 (44324): Guest Log: total 405632
2025-10-12 16:57:17 (44324): Guest Log: -rwxrwxrwx. 1 root root 220490371 Oct 12 19:07 ATLAS.root_0
2025-10-12 16:57:17 (44324): Guest Log: -rwxrwxrwx. 1 root root 193069666 Oct 12  2025 HITS.pool.root.1
2025-10-12 16:57:17 (44324): Guest Log: -rwxrwxrwx. 1 root root      8886 Oct 12 19:07 init_data.xml
2025-10-12 16:57:17 (44324): Guest Log: -rwxrwxrwx. 1 root root    569683 Oct 12 19:07 input.tar.gz
2025-10-12 16:57:17 (44324): Guest Log: -rwxrwxrwx. 1 root root   1198080 Oct 12  2025 result.tar.gz
2025-10-12 16:57:17 (44324): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 12 19:07 start_atlas.sh
2025-10-12 16:57:17 (44324): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-12 16:57:17 (44324): VM Completion File Detected.
2025-10-12 16:57:17 (44324): Powering off VM.
2025-10-12 16:57:18 (44324): Successfully stopped VM.
2025-10-12 16:57:18 (44324): Deregistering VM. (boinc_d76aebe8fbc67b1d, slot#0)
2025-10-12 16:57:18 (44324): Removing network bandwidth throttle group from VM.
2025-10-12 16:57:18 (44324): Removing VM from VirtualBox.
2025-10-12 16:57:24 (44324): called boinc_finish(0)

</stderr_txt>
]]>

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