Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
22:57:45 (3426): wrapper (7.7.26015): starting
22:57:45 (3426): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 22:57:45] Arguments: --nthreads 8
[2025-10-12 22:57:45] Threads: 8
[2025-10-12 22:57:45] Checking for CVMFS
[2025-10-12 22:57:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 22:57:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 22:57:45] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 22:57:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 22:57:45] 2.11.0.0 4746 1873 61028 151636 2 188 1989625 4096001 3411 130560 0 664454 99.011 725310 1133 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-12 22:57:45] CVMFS is ok
[2025-10-12 22:57:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 22:57:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 22:57:45] Further information can be found at the LHC@home message board.
[2025-10-12 22:57:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 22:57:45] Checking for apptainer binary...
[2025-10-12 22:57:45] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-12 22:57:45] apptainer is not installed, using version from CVMFS
[2025-10-12 22:57:45] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 22:57:45] WARNING: Environment variable TMPDIR already has value [/tmp/job_10529341/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node101
[2025-10-12 22:57:45] apptainer works
[2025-10-12 22:57:45] Set ATHENA_PROC_NUMBER=8
[2025-10-12 22:57:45] Set ATHENA_CORE_NUMBER=8
[2025-10-12 22:57:45] Starting ATLAS job with PandaID=6840181357
[2025-10-12 22:57:45] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10529341/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:45:01]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:45:01]  mtime=0
[2025-10-12 23:45:01]  protocol_id=None
[2025-10-12 23:45:01]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 23:45:01]  replicas=None
[2025-10-12 23:45:01]  scope=mc23_13p6TeV
[2025-10-12 23:45:01]  status=None
[2025-10-12 23:45:01]  status_code=0
[2025-10-12 23:45:01]  storage_token=
[2025-10-12 23:45:01]  surl=/tmp/job_10529341/atlas/pilot/slots/0/PanDA_Pilot-6840181357/log.46676269._080316.job.log.tgz.1
[2025-10-12 23:45:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/42/32/log.46676269._080316.job.log.tgz.1
[2025-10-12 23:45:01]  workdir=None
[2025-10-12 23:45:01] ]
[2025-10-12 23:45:01] 2025-10-12 21:44:23,345 | INFO     | transferring file log.46676269._080316.job.log.tgz.1 from /tmp/job_10529341/atlas/pilot/slots/0/PanDA_Pilot-6840181357/log.46676269._080316.job.log.tgz.1 to /tmp/j
[2025-10-12 23:45:01] 2025-10-12 21:44:23,345 | INFO     | executing command: /usr/bin/env mv /tmp/job_10529341/atlas/pilot/slots/0/PanDA_Pilot-6840181357/log.46676269._080316.job.log.tgz.1 /tmp/job_10529341/atlas/pilot/sl
[2025-10-12 23:45:01] 2025-10-12 21:44:23,353 | INFO     | adding to output.list: log.46676269._080316.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/42/32/log.46676269._080316.job.log.tg
[2025-10-12 23:45:01] 2025-10-12 21:44:23,354 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 23:45:01] 2025-10-12 21:44:23,354 | INFO     | summary of transferred files:
[2025-10-12 23:45:01] 2025-10-12 21:44:23,354 | INFO     |  -- lfn=log.46676269._080316.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 23:45:01] 2025-10-12 21:44:23,354 | INFO     | stage-out finished correctly
[2025-10-12 23:45:01] 2025-10-12 21:44:23,853 | INFO     | time since job start (2794s) is within the limit (172800.0s)
[2025-10-12 23:45:01] 2025-10-12 21:44:24,191 | INFO     | monitor loop #210: job 0:6840181357 is in state 'finished'
[2025-10-12 23:45:01] 2025-10-12 21:44:24,191 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:45:01] 2025-10-12 21:44:25,858 | INFO     | time since job start (2796s) is within the limit (172800.0s)
[2025-10-12 23:45:01] 2025-10-12 21:44:26,694 | INFO     | monitor loop #211: job 0:6840181357 is in state 'finished'
[2025-10-12 23:45:01] 2025-10-12 21:44:26,694 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:45:01] 2025-10-12 21:44:26,786 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 23:45:01] 2025-10-12 21:44:26,982 | INFO     | job 6840181357 has state=finished
[2025-10-12 23:45:01] 2025-10-12 21:44:26,982 | INFO     | preparing for final server update for job 6840181357 in state='finished'
[2025-10-12 23:45:01] 2025-10-12 21:44:26,982 | INFO     | this job has now completed (state=finished)
[2025-10-12 23:45:01] 2025-10-12 21:44:26,982 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 23:45:01] 2025-10-12 21:44:26,982 | INFO     | log transfer has been attempted: DONE
[2025-10-12 23:45:01] 2025-10-12 21:44:26,982 | INFO     | job 6840181357 has finished - writing final server update
[2025-10-12 23:45:01] 2025-10-12 21:44:26,983 | INFO     | total number of processed events: 400 (read)
[2025-10-12 23:45:01] 2025-10-12 21:44:26,983 | INFO     | executing command: lscpu
[2025-10-12 23:45:01] 2025-10-12 21:44:27,014 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 23:45:01] 2025-10-12 21:44:27,864 | INFO     | time since job start (2798s) is within the limit (172800.0s)
[2025-10-12 23:45:01] 2025-10-12 21:44:28,821 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 23:45:01] 2025-10-12 21:44:28,838 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2490.0464375
[2025-10-12 23:45:01] 2025-10-12 21:44:28,843 | INFO     | using path: /tmp/job_10529341/atlas/pilot/slots/0/PanDA_Pilot-6840181357/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:45:01] 2025-10-12 21:44:28,844 | INFO     | extracted standard info from prmon json
[2025-10-12 23:45:01] 2025-10-12 21:44:28,844 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 23:45:01] 2025-10-12 21:44:28,844 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 23:45:01] 2025-10-12 21:44:28,844 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 23:45:01] 2025-10-12 21:44:28,844 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 23:45:01] 2025-10-12 21:44:28,845 | INFO     | fitting pss+swap vs Time
[2025-10-12 23:45:01] 2025-10-12 21:44:28,845 | INFO     | sum of square deviations: 18381740.0
[2025-10-12 23:45:01] 2025-10-12 21:44:28,845 | INFO     | sum of deviations: -471524083.0
[2025-10-12 23:45:01] 2025-10-12 21:44:28,845 | INFO     | mean x: 1760304150.0
[2025-10-12 23:45:01] 2025-10-12 21:44:28,845 | INFO     | mean y: 2534201.0512820515
[2025-10-12 23:45:01] 2025-10-12 21:44:28,845 | INFO     | -- intersect: 45157443373.406265
[2025-10-12 23:45:01] 2025-10-12 21:44:28,845 | INFO     | intersect: 45157443373.406265
[2025-10-12 23:45:01] 2025-10-12 21:44:28,845 | INFO     | chi2: 0.0022266646617733
[2025-10-12 23:45:01] 2025-10-12 21:44:28,845 | INFO     | -- intersect: 45157443373.406265
[2025-10-12 23:45:01] 2025-10-12 21:44:28,845 | INFO     | current memory leak: -25.65 B/s (using 39 data points, chi2=0.00)
[2025-10-12 23:45:01] 2025-10-12 21:44:28,846 | INFO     | could have reported an average CPU frequency of 2700 MHz (5 samples)
[2025-10-12 23:45:01] 2025-10-12 21:44:28,846 | INFO     | ..............................
[2025-10-12 23:45:01] 2025-10-12 21:44:28,846 | INFO     | . Timing measurements:
[2025-10-12 23:45:01] 2025-10-12 21:44:28,846 | INFO     | . get job = 0 s
[2025-10-12 23:45:01] 2025-10-12 21:44:28,846 | INFO     | . initial setup = 1 s
[2025-10-12 23:45:01] 2025-10-12 21:44:28,846 | INFO     | . payload setup = 2 s
[2025-10-12 23:45:01] 2025-10-12 21:44:28,846 | INFO     | . stage-in = 0 s
[2025-10-12 23:45:01] 2025-10-12 21:44:28,846 | INFO     | . payload execution = 2775 s
[2025-10-12 23:45:01] 2025-10-12 21:44:28,846 | INFO     | . stage-out = 0 s
[2025-10-12 23:45:01] 2025-10-12 21:44:28,846 | INFO     | . log creation = 0 s
[2025-10-12 23:45:01] 2025-10-12 21:44:28,846 | INFO     | ..............................
[2025-10-12 23:45:01] 2025-10-12 21:44:28,896 | INFO     | 
[2025-10-12 23:45:01] 2025-10-12 21:44:28,896 | INFO     | job summary report
[2025-10-12 23:45:01] 2025-10-12 21:44:28,896 | INFO     | --------------------------------------------------
[2025-10-12 23:45:01] 2025-10-12 21:44:28,896 | INFO     | PanDA job id: 6840181357
[2025-10-12 23:45:01] 2025-10-12 21:44:28,896 | INFO     | task id: 46676269
[2025-10-12 23:45:01] 2025-10-12 21:44:28,897 | INFO     | errors: (none)
[2025-10-12 23:45:01] 2025-10-12 21:44:28,897 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 23:45:01] 2025-10-12 21:44:28,897 | INFO     | pilot state: finished 
[2025-10-12 23:45:01] 2025-10-12 21:44:28,897 | INFO     | transexitcode: 0
[2025-10-12 23:45:01] 2025-10-12 21:44:28,897 | INFO     | exeerrorcode: 0
[2025-10-12 23:45:01] 2025-10-12 21:44:28,897 | INFO     | exeerrordiag: 
[2025-10-12 23:45:01] 2025-10-12 21:44:28,897 | INFO     | exitcode: 0
[2025-10-12 23:45:01] 2025-10-12 21:44:28,897 | INFO     | exitmsg: OK
[2025-10-12 23:45:01] 2025-10-12 21:44:28,897 | INFO     | cpuconsumptiontime: 20325 s
[2025-10-12 23:45:01] 2025-10-12 21:44:28,897 | INFO     | nevents: 400
[2025-10-12 23:45:01] 2025-10-12 21:44:28,897 | INFO     | neventsw: 0
[2025-10-12 23:45:01] 2025-10-12 21:44:28,897 | INFO     | pid: 16515
[2025-10-12 23:45:01] 2025-10-12 21:44:28,897 | INFO     | pgrp: 16515
[2025-10-12 23:45:01] 2025-10-12 21:44:28,897 | INFO     | corecount: 8
[2025-10-12 23:45:01] 2025-10-12 21:44:28,897 | INFO     | event service: False
[2025-10-12 23:45:01] 2025-10-12 21:44:28,897 | INFO     | sizes: {0: 2348983, 1: 2349245, 10: 2349273, 2781: 2383738, 2784: 2383738, 2787: 2383964}
[2025-10-12 23:45:01] 2025-10-12 21:44:28,897 | INFO     | --------------------------------------------------
[2025-10-12 23:45:01] 2025-10-12 21:44:28,897 | INFO     | 
[2025-10-12 23:45:01] 2025-10-12 21:44:28,897 | INFO     | executing command: ls -lF /tmp/job_10529341/atlas/pilot/slots/0
[2025-10-12 23:45:01] 2025-10-12 21:44:28,907 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 23:45:01] 2025-10-12 21:44:28,907 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 23:45:01] 2025-10-12 21:44:28,907 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 23:45:01] 2025-10-12 21:44:28,907 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 23:45:01] 2025-10-12 21:44:28,907 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 23:45:01] 2025-10-12 21:44:28,907 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 23:45:01] 2025-10-12 21:44:28,907 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 23:45:01] 2025-10-12 21:44:28,907 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 23:45:01] 2025-10-12 21:44:28,907 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 23:45:01] 2025-10-12 21:44:28,907 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 23:45:01] 2025-10-12 21:44:28,908 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 23:45:01] 2025-10-12 21:44:28,908 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 23:45:01] 2025-10-12 21:44:28,908 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 23:45:01] 2025-10-12 21:44:28,908 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 23:45:01] 2025-10-12 21:44:28,908 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 23:45:01] 2025-10-12 21:44:28,908 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:45:01] 2025-10-12 21:44:28,908 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:45:01] 2025-10-12 21:44:28,908 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:45:01] 2025-10-12 21:44:28,908 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:45:01] 2025-10-12 21:44:28,908 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:45:01] 2025-10-12 21:44:28,908 | INFO     | job 6840181357 has completed (purged errors)
[2025-10-12 23:45:01] 2025-10-12 21:44:28,908 | INFO     | overall cleanup function is called
[2025-10-12 23:45:01] 2025-10-12 21:44:29,914 | INFO     | --- collectZombieJob: --- 10, [16515]
[2025-10-12 23:45:01] 2025-10-12 21:44:29,914 | INFO     | zombie collector waiting for pid 16515
[2025-10-12 23:45:01] 2025-10-12 21:44:29,914 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:45:01] 2025-10-12 21:44:29,914 | INFO     | collected zombie processes
[2025-10-12 23:45:01] 2025-10-12 21:44:29,914 | INFO     | will attempt to kill all subprocesses of pid=16515
[2025-10-12 23:45:01] 2025-10-12 21:44:30,009 | INFO     | process IDs to be killed: [16515] (in reverse order)
[2025-10-12 23:45:01] 2025-10-12 21:44:30,043 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:45:01] 2025-10-12 21:44:30,043 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:45:01] 2025-10-12 21:44:30,046 | INFO     | did not find any defunct processes belonging to 16515
[2025-10-12 23:45:01] 2025-10-12 21:44:30,049 | INFO     | did not find any defunct processes belonging to 16515
[2025-10-12 23:45:01] 2025-10-12 21:44:30,049 | INFO     | ready for new job
[2025-10-12 23:45:01] 2025-10-12 21:44:30,049 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:45:01] 2025-10-12 21:44:30,050 | INFO     | ***************************************
[2025-10-12 23:45:01] 2025-10-12 21:44:30,050 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:45:01] 2025-10-12 21:44:30,050 | INFO     | ***************************************
[2025-10-12 23:45:01] 2025-10-12 21:44:30,050 | INFO     | 
[2025-10-12 23:45:01] 2025-10-12 21:44:30,064 | INFO     | architecture information:
[2025-10-12 23:45:01] 2025-10-12 21:44:30,064 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:45:01] 2025-10-12 21:44:30,070 | INFO     | cat /etc/os-release:
[2025-10-12 23:45:01] NAME="CentOS Linux"
[2025-10-12 23:45:01] VERSION="7 (Core)"
[2025-10-12 23:45:01] ID="centos"
[2025-10-12 23:45:01] ID_LIKE="rhel fedora"
[2025-10-12 23:45:01] VERSION_ID="7"
[2025-10-12 23:45:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:45:01] ANSI_COLOR="0;31"
[2025-10-12 23:45:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:45:01] HOME_URL="https://www.centos.org/"
[2025-10-12 23:45:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:45:01] 
[2025-10-12 23:45:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:45:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:45:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:45:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:45:01] 
[2025-10-12 23:45:01] 2025-10-12 21:44:30,070 | INFO     | ***************************************
[2025-10-12 23:45:01] 2025-10-12 21:44:30,573 | INFO     | executing command: df -mP /tmp/job_10529341/atlas/pilot/slots/0
[2025-10-12 23:45:01] 2025-10-12 21:44:30,579 | INFO     | sufficient remaining disk space (228421795840 B)
[2025-10-12 23:45:01] 2025-10-12 21:44:30,579 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:45:01] 2025-10-12 21:44:30,580 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:45:01] 2025-10-12 21:44:30,580 | INFO     | update_server=False
[2025-10-12 23:45:01] 2025-10-12 21:44:30,580 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:45:01] 2025-10-12 21:44:30,580 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:45:01] 2025-10-12 21:44:30,580 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:45:01] 2025-10-12 21:44:30,580 | INFO     | aborting loop
[2025-10-12 23:45:01] 2025-10-12 21:44:31,302 | INFO     | all data control threads have been joined
[2025-10-12 23:45:01] 2025-10-12 21:44:31,418 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:45:01] 2025-10-12 21:44:31,522 | INFO     | all job control threads have been joined
[2025-10-12 23:45:01] 2025-10-12 21:44:31,585 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:45:01] 2025-10-12 21:44:31,585 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:45:01] 2025-10-12 21:44:31,585 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:45:01] 2025-10-12 21:44:31,822 | INFO     | all payload control threads have been joined
[2025-10-12 23:45:01] 2025-10-12 21:44:31,990 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:45:01] 2025-10-12 21:44:32,213 | INFO     | [job] validate thread has finished
[2025-10-12 23:45:01] 2025-10-12 21:44:32,303 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:45:01] 2025-10-12 21:44:32,307 | INFO     | [data] control thread has finished
[2025-10-12 23:45:01] 2025-10-12 21:44:32,467 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:45:01] 2025-10-12 21:44:32,527 | INFO     | [job] control thread has finished
[2025-10-12 23:45:01] 2025-10-12 21:44:32,560 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:45:01] 2025-10-12 21:44:32,678 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:45:01] 2025-10-12 21:44:32,827 | INFO     | [payload] control thread has finished
[2025-10-12 23:45:01] 2025-10-12 21:44:32,840 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:45:01] 2025-10-12 21:44:32,944 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:45:01] 2025-10-12 21:44:33,423 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:45:01] 2025-10-12 21:44:36,845 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:45:01] 2025-10-12 21:44:41,343 | INFO     | job.realtimelogging is not enabled
[2025-10-12 23:45:01] 2025-10-12 21:44:42,348 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:45:01] 2025-10-12 21:44:53,959 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:45:01] 2025-10-12 21:44:55,479 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060466944)>']
[2025-10-12 23:45:01] 2025-10-12 21:45:00,504 | INFO     | all workflow threads have been joined
[2025-10-12 23:45:01] 2025-10-12 21:45:00,504 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:45:01] 2025-10-12 21:45:00,504 | INFO     | traces error code: 0
[2025-10-12 23:45:01] 2025-10-12 21:45:00,505 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:45:01] 2025-10-12 21:45:01,049 | INFO     | PID=8123 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 23:45:01] 2025-10-12 21:45:01,049 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:45:01] 2025-10-12 21:45:01,049 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:45:01] 2025-10-12 21:45:01,049 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:45:01] 2025-10-12 21:45:01,049 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:45:01] 2025-10-12 21:45:01,049 | INFO     | [monitor] control thread has ended
[2025-10-12 23:45:01] 2025-10-12 21:45:01,101 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:45:01] 2025-10-12 21:45:01,102 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:45:01] 2025-10-12 21:45:01,104 [wrapper] pilotpid: 8123
[2025-10-12 23:45:01] 2025-10-12 21:45:01,105 [wrapper] Pilot exit status: 0
[2025-10-12 23:45:01] 2025-10-12 21:45:01,109 [wrapper] pandaids: 6840181357
[2025-10-12 23:45:01] 2025-10-12 21:45:01,131 [wrapper] cleanup supervisor_pilot  4164 8124
[2025-10-12 23:45:01] 2025-10-12 21:45:01,132 [wrapper] Test setup, not cleaning
[2025-10-12 23:45:01] 2025-10-12 21:45:01,134 [wrapper] apfmon messages muted
[2025-10-12 23:45:01] 2025-10-12 21:45:01,135 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:45:01] 2025-10-12 21:45:01,136 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:45:01]  *** Error codes and diagnostics ***
[2025-10-12 23:45:01]     "exeErrorCode": 0,
[2025-10-12 23:45:01]     "exeErrorDiag": "",
[2025-10-12 23:45:01]     "pilotErrorCode": 0,
[2025-10-12 23:45:01]     "pilotErrorDiag": "",
[2025-10-12 23:45:01]  *** Listing of results directory ***
[2025-10-12 23:45:01] total 412752
[2025-10-12 23:45:01] -rw------- 1 mf493845 unix-user    557409 Oct 12 15:55 pilot3.tar.gz
[2025-10-12 23:45:01] -rwx------ 1 mf493845 unix-user     36292 Oct 12 16:10 runpilot2-wrapper.sh
[2025-10-12 23:45:01] -rw------- 1 mf493845 unix-user      5112 Oct 12 16:10 queuedata.json
[2025-10-12 23:45:01] -rw------- 1 mf493845 unix-user       100 Oct 12 22:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:45:01] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct 12 22:00 run_atlas
[2025-10-12 23:45:01] -rw------- 1 mf493845 unix-user       105 Oct 12 22:00 job.xml
[2025-10-12 23:45:01] -rw-r--r-- 2 mf493845 unix-user 222955656 Oct 12 22:57 EVNT.46676267._004215.pool.root.1
[2025-10-12 23:45:01] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 12 22:57 start_atlas.sh
[2025-10-12 23:45:01] drwxrwx--x 2 mf493845 unix-user       100 Oct 12 22:57 shared
[2025-10-12 23:45:01] -rw-r--r-- 2 mf493845 unix-user    569679 Oct 12 22:57 input.tar.gz
[2025-10-12 23:45:01] -rw------- 1 mf493845 unix-user      6394 Oct 12 22:57 init_data.xml
[2025-10-12 23:45:01] -rw------- 1 mf493845 unix-user         0 Oct 12 22:57 boinc_setup_complete
[2025-10-12 23:45:01] -rw------- 1 mf493845 unix-user      8192 Oct 12 22:57 boinc_mmap_file
[2025-10-12 23:45:01] -rw------- 1 mf493845 unix-user         0 Oct 12 22:57 boinc_lockfile
[2025-10-12 23:45:01] -rw------- 1 mf493845 unix-user      2550 Oct 12 22:57 pandaJob.out
[2025-10-12 23:45:01] -rw------- 1 mf493845 unix-user    975536 Oct 12 22:57 agis_schedconf.cvmfs.json
[2025-10-12 23:45:01] -rw------- 1 mf493845 unix-user   1560580 Oct 12 22:57 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:45:01] drwx------ 5 mf493845 unix-user       440 Oct 12 22:57 pilot3
[2025-10-12 23:45:01] -rw------- 1 mf493845 unix-user 194352660 Oct 12 23:43 HITS.46676269._080316.pool.root.1
[2025-10-12 23:45:01] -rw------- 1 mf493845 unix-user      1017 Oct 12 23:44 memory_monitor_summary.json
[2025-10-12 23:45:01] -rw------- 1 mf493845 unix-user    290090 Oct 12 23:44 log.46676269._080316.job.log.tgz.1
[2025-10-12 23:45:01] -rw------- 1 mf493845 unix-user      7771 Oct 12 23:44 heartbeat.json
[2025-10-12 23:45:01] -rw------- 1 mf493845 unix-user        95 Oct 12 23:45 pilot_heartbeat.json
[2025-10-12 23:45:01] -rw------- 1 mf493845 unix-user       744 Oct 12 23:45 pilotlog.txt
[2025-10-12 23:45:01] -rw------- 1 mf493845 unix-user    447672 Oct 12 23:45 log.46676269._080316.job.log.1
[2025-10-12 23:45:01] -rw------- 1 mf493845 unix-user       357 Oct 12 23:45 output.list
[2025-10-12 23:45:01] -rw------- 1 mf493845 unix-user       620 Oct 12 23:45 runtime_log
[2025-10-12 23:45:01] -rw------- 1 mf493845 unix-user    757760 Oct 12 23:45 result.tar.gz
[2025-10-12 23:45:01] -rw------- 1 mf493845 unix-user      9076 Oct 12 23:45 runtime_log.err
[2025-10-12 23:45:01] -rw------- 1 mf493845 unix-user       641 Oct 12 23:45 qMQNDmJxBS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmCBkNDm0w2G9n.diag
[2025-10-12 23:45:01] -rw------- 1 mf493845 unix-user     22134 Oct 12 23:45 stderr.txt
[2025-10-12 23:45:01] HITS file was successfully produced:
[2025-10-12 23:45:01] -rw------- 1 mf493845 unix-user 194352660 Oct 12 23:43 shared/HITS.pool.root.1
[2025-10-12 23:45:01]  *** Contents of shared directory: ***
[2025-10-12 23:45:01] total 408848
[2025-10-12 23:45:01] -rw-r--r-- 2 mf493845 unix-user 222955656 Oct 12 22:57 ATLAS.root_0
[2025-10-12 23:45:01] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 12 22:57 start_atlas.sh
[2025-10-12 23:45:01] -rw-r--r-- 2 mf493845 unix-user    569679 Oct 12 22:57 input.tar.gz
[2025-10-12 23:45:01] -rw------- 1 mf493845 unix-user 194352660 Oct 12 23:43 HITS.pool.root.1
[2025-10-12 23:45:01] -rw------- 1 mf493845 unix-user    757760 Oct 12 23:45 result.tar.gz
23:45:02 (3426): run_atlas exited; CPU time 20364.865316
23:45:02 (3426): called boinc_finish(0)

</stderr_txt>
]]>

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