Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:16:00 (3177391): wrapper (7.7.26015): starting
07:16:00 (3177391): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 07:16:00] Arguments: --nthreads 3
[2025-10-13 07:16:00] Threads: 3
[2025-10-13 07:16:00] Checking for CVMFS
[2025-10-13 07:16:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 07:16:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 07:16:00] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 07:16:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 07:16:00] 2.9.2.0 1621947 5212 87140 151650 2 9 24356016 36864001 0 130560 0 4063831 99.987 307842 1172 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 07:16:00] CVMFS is ok
[2025-10-13 07:16:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 07:16:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 07:16:00] Further information can be found at the LHC@home message board.
[2025-10-13 07:16:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 07:16:00] Checking for apptainer binary...
[2025-10-13 07:16:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 07:16:00] Running /usr/bin/apptainer --version
[2025-10-13 07:16:00] apptainer version 1.4.1-1.1
[2025-10-13 07:16:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 07:16:00] thA305
[2025-10-13 07:16:00] apptainer works
[2025-10-13 07:16:00] Set ATHENA_PROC_NUMBER=3
[2025-10-13 07:16:00] Set ATHENA_CORE_NUMBER=3
[2025-10-13 07:16:00] Starting ATLAS job with PandaID=6840429859
[2025-10-13 07:16:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 08:42:20]  *** The last 200 lines of the pilot log: ***
[2025-10-13 08:42:20] 2025-10-13 06:41:48,421 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 08:42:20] 2025-10-13 06:41:48,421 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 08:42:20] 2025-10-13 06:41:48,421 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 08:42:20] 2025-10-13 06:41:48,422 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 08:42:20] 2025-10-13 06:41:48,422 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 08:42:20] 2025-10-13 06:41:48,422 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 08:42:20] 2025-10-13 06:41:48,422 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 08:42:20] 2025-10-13 06:41:48,422 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 08:42:20] 2025-10-13 06:41:48,422 | INFO     | job 6840429859 has completed (purged errors)
[2025-10-13 08:42:20] 2025-10-13 06:41:48,422 | INFO     | overall cleanup function is called
[2025-10-13 08:42:20] 2025-10-13 06:41:49,428 | INFO     | --- collectZombieJob: --- 10, [3187547]
[2025-10-13 08:42:20] 2025-10-13 06:41:49,428 | INFO     | zombie collector waiting for pid 3187547
[2025-10-13 08:42:20] 2025-10-13 06:41:49,428 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 08:42:20] 2025-10-13 06:41:49,429 | INFO     | collected zombie processes
[2025-10-13 08:42:20] 2025-10-13 06:41:49,429 | INFO     | will attempt to kill all subprocesses of pid=3187547
[2025-10-13 08:42:20] 2025-10-13 06:41:49,479 | INFO     | process IDs to be killed: [3187547] (in reverse order)
[2025-10-13 08:42:20] 2025-10-13 06:41:49,505 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 08:42:20] 2025-10-13 06:41:49,505 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 08:42:20] 2025-10-13 06:41:49,507 | INFO     | did not find any defunct processes belonging to 3187547
[2025-10-13 08:42:20] 2025-10-13 06:41:49,508 | INFO     | did not find any defunct processes belonging to 3187547
[2025-10-13 08:42:20] 2025-10-13 06:41:49,508 | INFO     | ready for new job
[2025-10-13 08:42:20] 2025-10-13 06:41:49,508 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 08:42:20] 2025-10-13 06:41:49,509 | INFO     | ***************************************
[2025-10-13 08:42:20] 2025-10-13 06:41:49,509 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 08:42:20] 2025-10-13 06:41:49,509 | INFO     | ***************************************
[2025-10-13 08:42:20] 2025-10-13 06:41:49,509 | INFO     | 
[2025-10-13 08:42:20] 2025-10-13 06:41:49,509 | INFO     | architecture information:
[2025-10-13 08:42:20] 2025-10-13 06:41:49,509 | INFO     | executing command: cat /etc/os-release
[2025-10-13 08:42:20] 2025-10-13 06:41:49,518 | INFO     | cat /etc/os-release:
[2025-10-13 08:42:20] NAME="CentOS Linux"
[2025-10-13 08:42:20] VERSION="7 (Core)"
[2025-10-13 08:42:20] ID="centos"
[2025-10-13 08:42:20] ID_LIKE="rhel fedora"
[2025-10-13 08:42:20] VERSION_ID="7"
[2025-10-13 08:42:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 08:42:20] ANSI_COLOR="0;31"
[2025-10-13 08:42:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 08:42:20] HOME_URL="https://www.centos.org/"
[2025-10-13 08:42:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 08:42:20] 
[2025-10-13 08:42:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 08:42:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 08:42:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 08:42:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 08:42:20] 
[2025-10-13 08:42:20] 2025-10-13 06:41:49,519 | INFO     | ***************************************
[2025-10-13 08:42:20] 2025-10-13 06:41:50,022 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 08:42:20] 2025-10-13 06:41:50,036 | INFO     | sufficient remaining disk space (235270045696 B)
[2025-10-13 08:42:20] 2025-10-13 06:41:50,036 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 08:42:20] 2025-10-13 06:41:50,036 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 08:42:20] 2025-10-13 06:41:50,036 | INFO     | update_server=False
[2025-10-13 08:42:20] 2025-10-13 06:41:50,036 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 08:42:20] 2025-10-13 06:41:50,036 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:42:20] 2025-10-13 06:41:50,287 | INFO     | all data control threads have been joined
[2025-10-13 08:42:20] 2025-10-13 06:41:50,396 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:42:20] 2025-10-13 06:41:50,396 | INFO     | aborting loop
[2025-10-13 08:42:20] 2025-10-13 06:41:50,613 | INFO     | all job control threads have been joined
[2025-10-13 08:42:20] 2025-10-13 06:41:51,042 | INFO     | [job] queue monitor thread has finished
[2025-10-13 08:42:20] 2025-10-13 06:41:51,042 | INFO     | [job] retrieve thread has finished
[2025-10-13 08:42:20] 2025-10-13 06:41:51,152 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 08:42:20] 2025-10-13 06:41:51,190 | INFO     | all payload control threads have been joined
[2025-10-13 08:42:20] 2025-10-13 06:41:51,256 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 08:42:20] 2025-10-13 06:41:51,256 | INFO     | [job] validate thread has finished
[2025-10-13 08:42:20] 2025-10-13 06:41:51,257 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 08:42:20] 2025-10-13 06:41:51,293 | INFO     | [data] control thread has finished
[2025-10-13 08:42:20] 2025-10-13 06:41:51,401 | INFO     | [job] job monitor thread has finished
[2025-10-13 08:42:20] 2025-10-13 06:41:51,449 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 08:42:20] 2025-10-13 06:41:51,619 | INFO     | [job] control thread has finished
[2025-10-13 08:42:20] 2025-10-13 06:41:51,702 | INFO     | [payload] failed_post thread has finished
[2025-10-13 08:42:20] 2025-10-13 06:41:51,875 | INFO     | [data] copytool_in thread has finished
[2025-10-13 08:42:20] 2025-10-13 06:41:52,196 | INFO     | [payload] control thread has finished
[2025-10-13 08:42:20] 2025-10-13 06:41:52,238 | INFO     | [payload] validate_post thread has finished
[2025-10-13 08:42:20] 2025-10-13 06:41:52,323 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 08:42:20] 2025-10-13 06:41:53,455 | INFO     | [data] copytool_out thread has finished
[2025-10-13 08:42:20] 2025-10-13 06:41:56,330 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 08:42:20] 2025-10-13 06:42:00,134 | INFO     | job.realtimelogging is not enabled
[2025-10-13 08:42:20] 2025-10-13 06:42:01,139 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 08:42:20] 2025-10-13 06:42:12,576 | INFO     | [monitor] cgroup control has ended
[2025-10-13 08:42:20] 2025-10-13 06:42:13,331 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139952418346816)>', '<ExcThread(monitor, started 139952062961408)>']
[2025-10-13 08:42:20] 2025-10-13 06:42:18,353 | INFO     | all workflow threads have been joined
[2025-10-13 08:42:20] 2025-10-13 06:42:18,353 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 08:42:20] 2025-10-13 06:42:18,353 | INFO     | traces error code: 0
[2025-10-13 08:42:20] 2025-10-13 06:42:18,353 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 08:42:20] 2025-10-13 06:42:20,631 | INFO     | PID=3181110 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 08:42:20] 2025-10-13 06:42:20,631 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 08:42:20] 2025-10-13 06:42:20,631 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 08:42:20] 2025-10-13 06:42:20,631 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 08:42:20] 2025-10-13 06:42:20,631 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 08:42:20] 2025-10-13 06:42:20,631 | INFO     | [monitor] control thread has ended
[2025-10-13 08:42:20] 2025-10-13 06:42:20,680 [wrapper] ==== pilot stdout END ====
[2025-10-13 08:42:20] 2025-10-13 06:42:20,683 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 08:42:20] 2025-10-13 06:42:20,685 [wrapper] pilotpid: 3181110
[2025-10-13 08:42:20] 2025-10-13 06:42:20,687 [wrapper] Pilot exit status: 0
[2025-10-13 08:42:20] 2025-10-13 06:42:20,694 [wrapper] pandaids: 6840429859
[2025-10-13 08:42:20] 2025-10-13 06:42:20,711 [wrapper] cleanup supervisor_pilot 3199686 3181111
[2025-10-13 08:42:20] 2025-10-13 06:42:20,713 [wrapper] Test setup, not cleaning
[2025-10-13 08:42:20] 2025-10-13 06:42:20,716 [wrapper] apfmon messages muted
[2025-10-13 08:42:20] 2025-10-13 06:42:20,718 [wrapper] ==== wrapper stdout END ====
[2025-10-13 08:42:20] 2025-10-13 06:42:20,720 [wrapper] ==== wrapper stderr END ====
[2025-10-13 08:42:20]  *** Error codes and diagnostics ***
[2025-10-13 08:42:20]     "exeErrorCode": 0,
[2025-10-13 08:42:20]     "exeErrorDiag": "",
[2025-10-13 08:42:20]     "pilotErrorCode": 0,
[2025-10-13 08:42:20]     "pilotErrorDiag": "",
[2025-10-13 08:42:20]  *** Listing of results directory ***
[2025-10-13 08:42:20] total 411948
[2025-10-13 08:42:20] -rw-r--r-- 1 boinc boinc    557409 Oct 12 19:17 pilot3.tar.gz
[2025-10-13 08:42:20] -rw-r--r-- 1 boinc boinc      5112 Oct 12 19:32 queuedata.json
[2025-10-13 08:42:20] -rwx------ 1 boinc boinc     36292 Oct 12 19:32 runpilot2-wrapper.sh
[2025-10-13 08:42:20] -rw-r--r-- 1 boinc boinc       100 Oct 13 07:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 08:42:20] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 07:16 run_atlas
[2025-10-13 08:42:20] -rw-r--r-- 1 boinc boinc       105 Oct 13 07:16 job.xml
[2025-10-13 08:42:20] -rw-r--r-- 2 boinc boinc 219922827 Oct 13 07:16 EVNT.46676267._002232.pool.root.1
[2025-10-13 08:42:20] -rw-r--r-- 2 boinc boinc    569679 Oct 13 07:16 input.tar.gz
[2025-10-13 08:42:20] -rw-r--r-- 2 boinc boinc     15120 Oct 13 07:16 start_atlas.sh
[2025-10-13 08:42:20] drwxrwx--x 2 boinc boinc      4096 Oct 13 07:16 shared
[2025-10-13 08:42:20] -rw-r--r-- 1 boinc boinc         0 Oct 13 07:16 boinc_setup_complete
[2025-10-13 08:42:20] -rw-r--r-- 1 boinc boinc      6439 Oct 13 07:16 init_data.xml
[2025-10-13 08:42:20] -rw-r--r-- 1 boinc boinc         0 Oct 13 07:16 boinc_lockfile
[2025-10-13 08:42:20] -rw-r--r-- 1 boinc boinc      2547 Oct 13 07:16 pandaJob.out
[2025-10-13 08:42:20] -rw------- 1 boinc boinc    973230 Oct 13 07:16 agis_schedconf.cvmfs.json
[2025-10-13 08:42:20] -rw------- 1 boinc boinc   1560580 Oct 13 07:16 agis_ddmendpoints.agis.ALL.json
[2025-10-13 08:42:20] drwx------ 5 boinc boinc      4096 Oct 13 07:16 pilot3
[2025-10-13 08:42:20] -rw-r--r-- 1 boinc boinc       530 Oct 13 08:41 boinc_task_state.xml
[2025-10-13 08:42:20] -rw------- 1 boinc boinc 196034724 Oct 13 08:41 HITS.46676269._084972.pool.root.1
[2025-10-13 08:42:20] -rw------- 1 boinc boinc      1024 Oct 13 08:41 memory_monitor_summary.json
[2025-10-13 08:42:20] -rw------- 1 boinc boinc        95 Oct 13 08:41 pilot_heartbeat.json
[2025-10-13 08:42:20] -rw------- 1 boinc boinc    239627 Oct 13 08:41 log.46676269._084972.job.log.tgz.1
[2025-10-13 08:42:20] -rw------- 1 boinc boinc      7758 Oct 13 08:41 heartbeat.json
[2025-10-13 08:42:20] -rw-r--r-- 1 boinc boinc      8192 Oct 13 08:42 boinc_mmap_file
[2025-10-13 08:42:20] -rw-r--r-- 1 boinc boinc        27 Oct 13 08:42 wrapper_checkpoint.txt
[2025-10-13 08:42:20] -rw------- 1 boinc boinc       747 Oct 13 08:42 pilotlog.txt
[2025-10-13 08:42:20] -rw------- 1 boinc boinc    752827 Oct 13 08:42 log.46676269._084972.job.log.1
[2025-10-13 08:42:20] -rw------- 1 boinc boinc       357 Oct 13 08:42 output.list
[2025-10-13 08:42:20] -rw-r--r-- 1 boinc boinc       620 Oct 13 08:42 runtime_log
[2025-10-13 08:42:20] -rw------- 1 boinc boinc   1013760 Oct 13 08:42 result.tar.gz
[2025-10-13 08:42:20] -rw-r--r-- 1 boinc boinc      8777 Oct 13 08:42 runtime_log.err
[2025-10-13 08:42:20] -rw------- 1 boinc boinc       658 Oct 13 08:42 BRtKDmR7ES8n9Rq4apOajLDm4fhM0noT9bVof3QYDmjXUMDmXBXY1n.diag
[2025-10-13 08:42:20] -rw-r--r-- 1 boinc boinc     11713 Oct 13 08:42 stderr.txt
[2025-10-13 08:42:20] HITS file was successfully produced:
[2025-10-13 08:42:20] -rw------- 1 boinc boinc 196034724 Oct 13 08:41 shared/HITS.pool.root.1
[2025-10-13 08:42:20]  *** Contents of shared directory: ***
[2025-10-13 08:42:20] total 407792
[2025-10-13 08:42:20] -rw-r--r-- 2 boinc boinc 219922827 Oct 13 07:16 ATLAS.root_0
[2025-10-13 08:42:20] -rw-r--r-- 2 boinc boinc    569679 Oct 13 07:16 input.tar.gz
[2025-10-13 08:42:20] -rw-r--r-- 2 boinc boinc     15120 Oct 13 07:16 start_atlas.sh
[2025-10-13 08:42:20] -rw------- 1 boinc boinc 196034724 Oct 13 08:41 HITS.pool.root.1
[2025-10-13 08:42:20] -rw------- 1 boinc boinc   1013760 Oct 13 08:42 result.tar.gz
08:42:21 (3177391): run_atlas exited; CPU time 14745.276468
08:42:21 (3177391): called boinc_finish(0)

</stderr_txt>
]]>

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