Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:42:30 (1754877): wrapper (7.7.26015): starting
15:42:30 (1754877): wrapper: running run_atlas (--nthreads 10)
[2025-10-12 15:42:30] Arguments: --nthreads 10
[2025-10-12 15:42:30] Threads: 10
[2025-10-12 15:42:30] Checking for CVMFS
[2025-10-12 15:42:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 15:42:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 15:42:31] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 15:42:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 15:42:33] 2.13.2.0 4001654 129679 471384 151635 2 243 29605764 32935936 18206 16776704 25 242943037 99.584 259492484 22386 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 15:42:33] CVMFS is ok
[2025-10-12 15:42:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 15:42:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 15:42:33] Further information can be found at the LHC@home message board.
[2025-10-12 15:42:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 15:42:33] Checking for apptainer binary...
[2025-10-12 15:42:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 15:42:33] Running /usr/bin/apptainer --version
[2025-10-12 15:42:33] apptainer version 1.4.3-1.el9
[2025-10-12 15:42:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 15:42:33] c7-11-13.aglt2.org
[2025-10-12 15:42:33] apptainer works
[2025-10-12 15:42:33] Set ATHENA_PROC_NUMBER=10
[2025-10-12 15:42:33] Set ATHENA_CORE_NUMBER=10
[2025-10-12 15:42:33] Starting ATLAS job with PandaID=6840429805
[2025-10-12 15:42:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:32:55]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:32:55] 2025-10-13 01:32:19,593 | INFO     | mean x: 1760308510.6083086
[2025-10-12 21:32:55] 2025-10-13 01:32:19,593 | INFO     | mean y: 2218500.0267062313
[2025-10-12 21:32:55] 2025-10-13 01:32:19,593 | INFO     | -- intersect: -4271025417.4702387
[2025-10-12 21:32:55] 2025-10-13 01:32:19,593 | INFO     | intersect: -4271025417.4702387
[2025-10-12 21:32:55] 2025-10-13 01:32:19,593 | INFO     | chi2: 3.625410590367337
[2025-10-12 21:32:55] 2025-10-13 01:32:19,593 | INFO     | current chi2=3.625410590367337 (change=0.24024852250848594 %)
[2025-10-12 21:32:55] 2025-10-13 01:32:19,593 | INFO     | right removable region: 336
[2025-10-12 21:32:55] 2025-10-13 01:32:19,596 | INFO     | sufficient remaining disk space (95321849856 B)
[2025-10-12 21:32:55] 2025-10-13 01:32:19,697 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-12 21:32:55] 2025-10-13 01:32:19,698 | INFO     | size of work directory /tmp/boinchome/slots/1/PanDA_Pilot-6840429805: 4517040 B (within 2537553920 B limit)
[2025-10-12 21:32:55] 2025-10-13 01:32:19,698 | INFO     | pfn file=/tmp/boinchome/slots/1/PanDA_Pilot-6840429805/HITS.46676269._084918.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-12 21:32:55] 2025-10-13 01:32:19,698 | INFO     | total size of present files: 0 B (workdir size: 4517040 B)
[2025-10-12 21:32:55] 2025-10-13 01:32:19,698 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/1/PanDA_Pilot-6840429805/HITS.46676269._084918.pool.root.1 since it does not exist
[2025-10-12 21:32:55] 2025-10-13 01:32:19,672 | INFO     | sum of square deviations: 11868373241.851639
[2025-10-12 21:32:55] 2025-10-13 01:32:19,825 | INFO     | sum of deviations: -43145202733.79526
[2025-10-12 21:32:55] 2025-10-13 01:32:19,825 | INFO     | mean x: 1760308815.6142433
[2025-10-12 21:32:55] 2025-10-13 01:32:19,825 | INFO     | mean y: 2241460.3323442135
[2025-10-12 21:32:55] 2025-10-13 01:32:19,826 | INFO     | -- intersect: 6401507743.595475
[2025-10-12 21:32:55] 2025-10-13 01:32:19,826 | INFO     | intersect: 6401507743.595475
[2025-10-12 21:32:55] 2025-10-13 01:32:19,826 | INFO     | chi2: 1.1092232851494581
[2025-10-12 21:32:55] 2025-10-13 01:32:19,826 | INFO     | current chi2=1.1092232851494581 (change=69.47770838603286 %)
[2025-10-12 21:32:55] 2025-10-13 01:32:19,846 | INFO     | sum of square deviations: 11347872439.936792
[2025-10-12 21:32:55] 2025-10-13 01:32:19,848 | INFO     | sum of deviations: -73569317570.8765
[2025-10-12 21:32:55] 2025-10-13 01:32:19,848 | INFO     | mean x: 1760308968.123494
[2025-10-12 21:32:55] 2025-10-13 01:32:19,848 | INFO     | mean y: 2250369.996987952
[2025-10-12 21:32:55] 2025-10-13 01:32:19,848 | INFO     | -- intersect: 11414497924.258408
[2025-10-12 21:32:55] 2025-10-13 01:32:19,848 | INFO     | intersect: 11414497924.258408
[2025-10-12 21:32:55] 2025-10-13 01:32:19,849 | INFO     | chi2: 0.6889590836196318
[2025-10-12 21:32:55] 2025-10-13 01:32:19,849 | INFO     | current chi2=0.6889590836196318 (change=37.888151750546726 %)
[2025-10-12 21:32:55] 2025-10-13 01:32:19,849 | INFO     | sum of square deviations: 10842813787.963207
[2025-10-12 21:32:55] 2025-10-13 01:32:19,856 | INFO     | sum of deviations: -83253707594.36696
[2025-10-12 21:32:55] 2025-10-13 01:32:19,856 | INFO     | mean x: 1760309120.6330276
[2025-10-12 21:32:55] 2025-10-13 01:32:19,856 | INFO     | mean y: 2253274.330275229
[2025-10-12 21:32:55] 2025-10-13 01:32:19,856 | INFO     | -- intersect: 13518326101.069168
[2025-10-12 21:32:55] 2025-10-13 01:32:19,856 | INFO     | intersect: 13518326101.069168
[2025-10-12 21:32:55] 2025-10-13 01:32:19,856 | INFO     | chi2: 0.5870422533426614
[2025-10-12 21:32:55] 2025-10-13 01:32:19,857 | INFO     | current chi2=0.5870422533426614 (change=14.792871260441611 %)
[2025-10-12 21:32:55] 2025-10-13 01:32:19,857 | INFO     | left removable region: 30
[2025-10-12 21:32:55] 2025-10-13 01:32:19,857 | INFO     | sum of square deviations: 8885061081.830042
[2025-10-12 21:32:55] 2025-10-13 01:32:19,863 | INFO     | sum of deviations: -29261799883.19605
[2025-10-12 21:32:55] 2025-10-13 01:32:19,863 | INFO     | mean x: 1760309395.1633987
[2025-10-12 21:32:55] 2025-10-13 01:32:19,863 | INFO     | mean y: 2233114.3039215687
[2025-10-12 21:32:55] 2025-10-13 01:32:19,863 | INFO     | -- intersect: 5799584508.895781
[2025-10-12 21:32:55] 2025-10-13 01:32:19,863 | INFO     | intersect: 5799584508.895781
[2025-10-12 21:32:55] 2025-10-13 01:32:19,864 | INFO     | chi2: 0.22665901043826828
[2025-10-12 21:32:55] 2025-10-13 01:32:19,864 | INFO     | -- intersect: 5799584508.895781
[2025-10-12 21:32:55] 2025-10-13 01:32:19,864 | INFO     | current memory leak: -3.29 B/s (using 306 data points, chi2=0.23)
[2025-10-12 21:32:55] 2025-10-13 01:32:19,865 | INFO     | could have reported an average CPU frequency of 3258 MHz (15 samples)
[2025-10-12 21:32:55] 2025-10-13 01:32:19,865 | INFO     | ..............................
[2025-10-12 21:32:55] 2025-10-13 01:32:19,865 | INFO     | . Timing measurements:
[2025-10-12 21:32:55] 2025-10-13 01:32:19,865 | INFO     | . get job = 0 s
[2025-10-12 21:32:55] 2025-10-13 01:32:19,865 | INFO     | . initial setup = 3 s
[2025-10-12 21:32:55] 2025-10-13 01:32:19,866 | INFO     | . payload setup = 22 s
[2025-10-12 21:32:55] 2025-10-13 01:32:19,866 | INFO     | . stage-in = 0 s
[2025-10-12 21:32:55] 2025-10-13 01:32:19,866 | INFO     | . payload execution = 20867 s
[2025-10-12 21:32:55] 2025-10-13 01:32:19,866 | INFO     | . stage-out = 2 s
[2025-10-12 21:32:55] 2025-10-13 01:32:19,866 | INFO     | . log creation = 0 s
[2025-10-12 21:32:55] 2025-10-13 01:32:19,866 | INFO     | ..............................
[2025-10-12 21:32:55] 2025-10-13 01:32:20,495 | INFO     | 
[2025-10-12 21:32:55] 2025-10-13 01:32:20,496 | INFO     | job summary report
[2025-10-12 21:32:55] 2025-10-13 01:32:20,496 | INFO     | --------------------------------------------------
[2025-10-12 21:32:55] 2025-10-13 01:32:20,496 | INFO     | PanDA job id: 6840429805
[2025-10-12 21:32:55] 2025-10-13 01:32:20,496 | INFO     | task id: 46676269
[2025-10-12 21:32:55] 2025-10-13 01:32:20,496 | INFO     | errors: (none)
[2025-10-12 21:32:55] 2025-10-13 01:32:20,497 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 21:32:55] 2025-10-13 01:32:20,497 | INFO     | pilot state: finished 
[2025-10-12 21:32:55] 2025-10-13 01:32:20,497 | INFO     | transexitcode: 0
[2025-10-12 21:32:55] 2025-10-13 01:32:20,497 | INFO     | exeerrorcode: 0
[2025-10-12 21:32:55] 2025-10-13 01:32:20,497 | INFO     | exeerrordiag: 
[2025-10-12 21:32:55] 2025-10-13 01:32:20,497 | INFO     | exitcode: 0
[2025-10-12 21:32:55] 2025-10-13 01:32:20,497 | INFO     | exitmsg: OK
[2025-10-12 21:32:55] 2025-10-13 01:32:20,497 | INFO     | cpuconsumptiontime: 34847 s
[2025-10-12 21:32:55] 2025-10-13 01:32:20,497 | INFO     | nevents: 400
[2025-10-12 21:32:55] 2025-10-13 01:32:20,497 | INFO     | neventsw: 0
[2025-10-12 21:32:55] 2025-10-13 01:32:20,497 | INFO     | pid: 1765316
[2025-10-12 21:32:55] 2025-10-13 01:32:20,497 | INFO     | pgrp: 1765316
[2025-10-12 21:32:55] 2025-10-13 01:32:20,497 | INFO     | corecount: 10
[2025-10-12 21:32:55] 2025-10-13 01:32:20,497 | INFO     | event service: False
[2025-10-12 21:32:55] 2025-10-13 01:32:20,497 | INFO     | sizes: {0: 2348029, 1: 2348771, 2: 2348885, 12: 2348913, 17: 2349203, 23: 2349231, 20894: 2382952, 20898: 2391950, 20900: 2392006, 20912: 2392228}
[2025-10-12 21:32:55] 2025-10-13 01:32:20,497 | INFO     | --------------------------------------------------
[2025-10-12 21:32:55] 2025-10-13 01:32:20,498 | INFO     | 
[2025-10-12 21:32:55] 2025-10-13 01:32:20,498 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 21:32:55] 2025-10-13 01:32:20,609 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 21:32:55] 2025-10-13 01:32:20,609 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 21:32:55] 2025-10-13 01:32:20,609 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 21:32:55] 2025-10-13 01:32:20,609 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 21:32:55] 2025-10-13 01:32:20,609 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 21:32:55] 2025-10-13 01:32:20,609 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 21:32:55] 2025-10-13 01:32:20,609 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 21:32:55] 2025-10-13 01:32:20,609 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 21:32:55] 2025-10-13 01:32:20,609 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 21:32:55] 2025-10-13 01:32:20,609 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 21:32:55] 2025-10-13 01:32:20,609 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 21:32:55] 2025-10-13 01:32:20,610 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 21:32:55] 2025-10-13 01:32:20,610 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 21:32:55] 2025-10-13 01:32:20,610 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 21:32:55] 2025-10-13 01:32:20,610 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 21:32:55] 2025-10-13 01:32:20,610 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 21:32:55] 2025-10-13 01:32:20,661 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 21:32:55] 2025-10-13 01:32:20,661 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 21:32:55] 2025-10-13 01:32:20,661 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 21:32:55] 2025-10-13 01:32:20,661 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 21:32:55] 2025-10-13 01:32:20,661 | INFO     | job 6840429805 has completed (purged errors)
[2025-10-12 21:32:55] 2025-10-13 01:32:20,662 | INFO     | overall cleanup function is called
[2025-10-12 21:32:55] 2025-10-13 01:32:20,702 | INFO     | PID=1758721 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 21:32:55] 2025-10-13 01:32:20,720 | INFO     | .. there are 21 such processes running
[2025-10-12 21:32:55] 2025-10-13 01:32:21,113 | INFO     | number of running child processes to parent process 1765316: 1
[2025-10-12 21:32:55] 2025-10-13 01:32:21,113 | INFO     | maximum number of monitored processes: 6
[2025-10-12 21:32:55] 2025-10-13 01:32:21,113 | INFO     | aborting job monitoring since job object (job id=6840429805) has expired
[2025-10-12 21:32:55] 2025-10-13 01:32:21,712 | INFO     | --- collectZombieJob: --- 10, [1765316]
[2025-10-12 21:32:55] 2025-10-13 01:32:21,712 | INFO     | zombie collector waiting for pid 1765316
[2025-10-12 21:32:55] 2025-10-13 01:32:21,712 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 21:32:55] 2025-10-13 01:32:21,712 | INFO     | collected zombie processes
[2025-10-12 21:32:55] 2025-10-13 01:32:21,712 | INFO     | will attempt to kill all subprocesses of pid=1765316
[2025-10-12 21:32:55] 2025-10-13 01:32:22,110 | INFO     | process IDs to be killed: [1765316] (in reverse order)
[2025-10-12 21:32:55] 2025-10-13 01:32:22,283 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 21:32:55] 2025-10-13 01:32:22,285 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:32:55] 2025-10-13 01:32:22,300 | INFO     | did not find any defunct processes belonging to 1765316
[2025-10-12 21:32:55] 2025-10-13 01:32:22,313 | INFO     | did not find any defunct processes belonging to 1765316
[2025-10-12 21:32:55] 2025-10-13 01:32:22,313 | INFO     | ready for new job
[2025-10-12 21:32:55] 2025-10-13 01:32:22,313 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:32:55] 2025-10-13 01:32:22,315 | INFO     | ***************************************
[2025-10-12 21:32:55] 2025-10-13 01:32:22,315 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:32:55] 2025-10-13 01:32:22,315 | INFO     | ***************************************
[2025-10-12 21:32:55] 2025-10-13 01:32:22,315 | INFO     | 
[2025-10-12 21:32:55] 2025-10-13 01:32:22,319 | INFO     | architecture information:
[2025-10-12 21:32:55] 2025-10-13 01:32:22,320 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:32:55] 2025-10-13 01:32:22,410 | INFO     | cat /etc/os-release:
[2025-10-12 21:32:55] NAME="CentOS Linux"
[2025-10-12 21:32:55] VERSION="7 (Core)"
[2025-10-12 21:32:55] ID="centos"
[2025-10-12 21:32:55] ID_LIKE="rhel fedora"
[2025-10-12 21:32:55] VERSION_ID="7"
[2025-10-12 21:32:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:32:55] ANSI_COLOR="0;31"
[2025-10-12 21:32:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:32:55] HOME_URL="https://www.centos.org/"
[2025-10-12 21:32:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:32:55] 
[2025-10-12 21:32:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:32:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:32:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:32:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:32:55] 
[2025-10-12 21:32:55] 2025-10-13 01:32:22,411 | INFO     | ***************************************
[2025-10-12 21:32:55] 2025-10-13 01:32:22,924 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 21:32:55] 2025-10-13 01:32:23,151 | INFO     | sufficient remaining disk space (95329189888 B)
[2025-10-12 21:32:55] 2025-10-13 01:32:23,151 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:32:55] 2025-10-13 01:32:23,152 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:32:55] 2025-10-13 01:32:23,152 | INFO     | update_server=False
[2025-10-12 21:32:55] 2025-10-13 01:32:23,152 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:32:55] 2025-10-13 01:32:23,172 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:32:55] 2025-10-13 01:32:23,305 | INFO     | all payload control threads have been joined
[2025-10-12 21:32:55] 2025-10-13 01:32:23,624 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 21:32:55] 2025-10-13 01:32:23,624 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 21:32:55] 2025-10-13 01:32:23,624 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:32:55] 2025-10-13 01:32:23,624 | INFO     | will abort loop
[2025-10-12 21:32:55] 2025-10-13 01:32:23,691 | INFO     | all job control threads have been joined
[2025-10-12 21:32:55] 2025-10-13 01:32:24,101 | INFO     | all data control threads have been joined
[2025-10-12 21:32:55] 2025-10-13 01:32:24,158 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:32:55] 2025-10-13 01:32:24,219 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:32:55] 2025-10-13 01:32:24,280 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:32:55] 2025-10-13 01:32:24,311 | INFO     | [payload] control thread has finished
[2025-10-12 21:32:55] 2025-10-13 01:32:24,386 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:32:55] 2025-10-13 01:32:24,517 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:32:55] 2025-10-13 01:32:24,629 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:32:55] 2025-10-13 01:32:24,698 | INFO     | [job] control thread has finished
[2025-10-12 21:32:55] 2025-10-13 01:32:24,829 | INFO     | [job] validate thread has finished
[2025-10-12 21:32:55] 2025-10-13 01:32:24,989 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:32:55] 2025-10-13 01:32:25,107 | INFO     | [data] control thread has finished
[2025-10-12 21:32:55] 2025-10-13 01:32:25,157 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:32:55] 2025-10-13 01:32:25,188 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:32:55] 2025-10-13 01:32:25,347 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:32:55] 2025-10-13 01:32:25,362 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:32:55] 2025-10-13 01:32:26,163 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:32:55] 2025-10-13 01:32:26,228 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:32:55] 2025-10-13 01:32:27,190 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:32:55] 2025-10-13 01:32:43,703 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:32:55] 2025-10-13 01:32:44,709 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139765157619520)>', '<ExcThread(monitor, started 139764502079232)>']
[2025-10-12 21:32:55] 2025-10-13 01:32:49,736 | INFO     | all workflow threads have been joined
[2025-10-12 21:32:55] 2025-10-13 01:32:49,736 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:32:55] 2025-10-13 01:32:49,736 | INFO     | traces error code: 0
[2025-10-12 21:32:55] 2025-10-13 01:32:49,736 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:32:55] 2025-10-13 01:32:54,747 | INFO     | PID=1758721 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 21:32:55] 2025-10-13 01:32:54,748 | INFO     | .. there are 21 such processes running
[2025-10-12 21:32:55] 2025-10-13 01:32:54,748 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:32:55] 2025-10-13 01:32:54,749 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:32:55] 2025-10-13 01:32:54,749 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:32:55] 2025-10-13 01:32:54,749 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:32:55] 2025-10-13 01:32:54,749 | INFO     | [monitor] control thread has ended
[2025-10-12 21:32:55] 2025-10-13 01:32:55,004 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:32:55] 2025-10-13 01:32:55,007 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:32:55] 2025-10-13 01:32:55,010 [wrapper] pilotpid: 1758721
[2025-10-12 21:32:55] 2025-10-13 01:32:55,013 [wrapper] Pilot exit status: 0
[2025-10-12 21:32:55] 2025-10-13 01:32:55,030 [wrapper] pandaids: 6840429805
[2025-10-12 21:32:55] 2025-10-13 01:32:55,154 [wrapper] cleanup supervisor_pilot 2690090 1758722
[2025-10-12 21:32:55] 2025-10-13 01:32:55,166 [wrapper] Test setup, not cleaning
[2025-10-12 21:32:55] 2025-10-13 01:32:55,170 [wrapper] apfmon messages muted
[2025-10-12 21:32:55] 2025-10-13 01:32:55,174 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:32:55] 2025-10-13 01:32:55,177 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:32:55]  *** Error codes and diagnostics ***
[2025-10-12 21:32:55]     "exeErrorCode": 0,
[2025-10-12 21:32:55]     "exeErrorDiag": "",
[2025-10-12 21:32:55]     "pilotErrorCode": 0,
[2025-10-12 21:32:55]     "pilotErrorDiag": "",
[2025-10-12 21:32:55]  *** Listing of results directory ***
[2025-10-12 21:32:55] total 418136
[2025-10-12 21:32:55] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 13:17 pilot3.tar.gz
[2025-10-12 21:32:55] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 13:27 queuedata.json
[2025-10-12 21:32:55] -rwx------. 1 boincer umatlas     36292 Oct 12 13:27 runpilot2-wrapper.sh
[2025-10-12 21:32:55] -rw-r--r--. 1 boincer umatlas       100 Oct 12 15:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:32:55] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 15:42 run_atlas
[2025-10-12 21:32:55] -rw-r--r--. 1 boincer umatlas       105 Oct 12 15:42 job.xml
[2025-10-12 21:32:55] -rw-r--r--. 2 boincer umatlas 219618259 Oct 12 15:42 EVNT.46676267._004821.pool.root.1
[2025-10-12 21:32:55] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 15:42 start_atlas.sh
[2025-10-12 21:32:55] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 15:42 shared
[2025-10-12 21:32:55] -rw-r--r--. 2 boincer umatlas    569679 Oct 12 15:42 input.tar.gz
[2025-10-12 21:32:55] -rw-r--r--. 1 boincer umatlas         0 Oct 12 15:42 boinc_lockfile
[2025-10-12 21:32:55] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 15:42 pandaJob.out
[2025-10-12 21:32:55] -rw-------. 1 boincer umatlas    975536 Oct 12 15:43 agis_schedconf.cvmfs.json
[2025-10-12 21:32:55] drwx------. 5 boincer umatlas      4096 Oct 12 15:43 pilot3
[2025-10-12 21:32:55] -rw-------. 1 boincer umatlas 198219220 Oct 12 21:31 HITS.46676269._084918.pool.root.1
[2025-10-12 21:32:55] -rw-r--r--. 1 boincer umatlas      6899 Oct 12 21:31 init_data.xml
[2025-10-12 21:32:55] -rw-r--r--. 1 boincer umatlas       530 Oct 12 21:31 boinc_task_state.xml
[2025-10-12 21:32:55] -rw-------. 1 boincer umatlas      1034 Oct 12 21:31 memory_monitor_summary.json
[2025-10-12 21:32:55] -rw-------. 1 boincer umatlas   1560580 Oct 12 21:32 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:32:55] -rw-------. 1 boincer umatlas    582556 Oct 12 21:32 log.46676269._084918.job.log.tgz.1
[2025-10-12 21:32:55] -rw-------. 1 boincer umatlas      7784 Oct 12 21:32 heartbeat.json
[2025-10-12 21:32:55] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 21:32 boinc_mmap_file
[2025-10-12 21:32:55] -rw-r--r--. 1 boincer umatlas        28 Oct 12 21:32 wrapper_checkpoint.txt
[2025-10-12 21:32:55] -rw-------. 1 boincer umatlas        95 Oct 12 21:32 pilot_heartbeat.json
[2025-10-12 21:32:55] -rw-------. 1 boincer umatlas       823 Oct 12 21:32 pilotlog.txt
[2025-10-12 21:32:55] -rw-------. 1 boincer umatlas   2637523 Oct 12 21:32 log.46676269._084918.job.log.1
[2025-10-12 21:32:55] -rw-------. 1 boincer umatlas       357 Oct 12 21:32 output.list
[2025-10-12 21:32:55] -rw-r--r--. 1 boincer umatlas       620 Oct 12 21:32 runtime_log
[2025-10-12 21:32:55] -rw-------. 1 boincer umatlas   3235840 Oct 12 21:32 result.tar.gz
[2025-10-12 21:32:55] -rw-r--r--. 1 boincer umatlas      8706 Oct 12 21:32 runtime_log.err
[2025-10-12 21:32:55] -rw-------. 1 boincer umatlas       658 Oct 12 21:32 jXiNDmW2ES8n9Rq4apOajLDm4fhM0noT9bVof3QYDmiWUMDm3IDCCo.diag
[2025-10-12 21:32:55] -rw-r--r--. 1 boincer umatlas     21654 Oct 12 21:32 stderr.txt
[2025-10-12 21:32:55] HITS file was successfully produced:
[2025-10-12 21:32:55] -rw-------. 1 boincer umatlas 198219220 Oct 12 21:31 shared/HITS.pool.root.1
[2025-10-12 21:32:55]  *** Contents of shared directory: ***
[2025-10-12 21:32:55] total 411788
[2025-10-12 21:32:55] -rw-r--r--. 2 boincer umatlas 219618259 Oct 12 15:42 ATLAS.root_0
[2025-10-12 21:32:55] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 15:42 start_atlas.sh
[2025-10-12 21:32:55] -rw-r--r--. 2 boincer umatlas    569679 Oct 12 15:42 input.tar.gz
[2025-10-12 21:32:55] -rw-------. 1 boincer umatlas 198219220 Oct 12 21:31 HITS.pool.root.1
[2025-10-12 21:32:55] -rw-------. 1 boincer umatlas   3235840 Oct 12 21:32 result.tar.gz
21:32:56 (1754877): run_atlas exited; CPU time 35275.083737
21:32:56 (1754877): called boinc_finish(0)

</stderr_txt>
]]>

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