Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:22:59 (124005): wrapper (7.7.26015): starting
07:22:59 (124005): wrapper: running run_atlas (--nthreads 6)
[2025-10-13 07:22:59] Arguments: --nthreads 6
[2025-10-13 07:22:59] Threads: 6
[2025-10-13 07:22:59] Checking for CVMFS
[2025-10-13 07:22:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 07:22:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 07:22:59] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 07:22:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 07:22:59] 2.11.5.0 3651556 4894 74928 151640 2 57 38783587 52428800 1858 130560 0 15345093 99.998 169833 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-13 07:22:59] CVMFS is ok
[2025-10-13 07:22:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 07:22:59] Checking for apptainer binary...
[2025-10-13 07:22:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 07:22:59] Running /usr/bin/apptainer --version
[2025-10-13 07:22:59] apptainer version 1.3.5-1.el9
[2025-10-13 07:22:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 07:22:59] testio008
[2025-10-13 07:22:59] apptainer works
[2025-10-13 07:22:59] Set ATHENA_PROC_NUMBER=6
[2025-10-13 07:22:59] Set ATHENA_CORE_NUMBER=6
[2025-10-13 07:22:59] Starting ATLAS job with PandaID=6840224883
[2025-10-13 07:22:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 08:32:38]  *** The last 200 lines of the pilot log: ***
[2025-10-13 08:32:38] 2025-10-12 23:31:49,646 | INFO     | log transfer has been attempted: DONE
[2025-10-13 08:32:38] 2025-10-12 23:31:49,646 | INFO     | job 6840224883 has finished - writing final server update
[2025-10-13 08:32:38] 2025-10-12 23:31:49,646 | INFO     | total number of processed events: 400 (read)
[2025-10-13 08:32:38] 2025-10-12 23:31:49,646 | INFO     | executing command: lscpu
[2025-10-13 08:32:38] 2025-10-12 23:31:49,657 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 08:32:38] 2025-10-12 23:31:51,260 | INFO     | monitor loop #304: job 0:6840224883 is in state 'finished'
[2025-10-13 08:32:38] 2025-10-12 23:31:51,261 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:32:38] 2025-10-12 23:31:51,457 | INFO     | time since job start (4105s) is within the limit (172800.0s)
[2025-10-13 08:32:38] 2025-10-12 23:31:53,462 | INFO     | time since job start (4107s) is within the limit (172800.0s)
[2025-10-13 08:32:38] 2025-10-12 23:31:53,763 | INFO     | monitor loop #305: job 0:6840224883 is in state 'finished'
[2025-10-13 08:32:38] 2025-10-12 23:31:53,764 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:32:38] 2025-10-12 23:31:55,467 | INFO     | time since job start (4109s) is within the limit (172800.0s)
[2025-10-13 08:32:38] 2025-10-12 23:31:56,266 | INFO     | monitor loop #306: job 0:6840224883 is in state 'finished'
[2025-10-13 08:32:38] 2025-10-12 23:31:56,267 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:32:38] 2025-10-12 23:31:57,472 | INFO     | time since job start (4111s) is within the limit (172800.0s)
[2025-10-13 08:32:38] 2025-10-12 23:31:58,769 | INFO     | monitor loop #307: job 0:6840224883 is in state 'finished'
[2025-10-13 08:32:38] 2025-10-12 23:31:58,770 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:32:38] 2025-10-12 23:31:59,477 | INFO     | time since job start (4113s) is within the limit (172800.0s)
[2025-10-13 08:32:38] 2025-10-12 23:31:59,477 | INFO     | 4135s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-13 08:32:38] 2025-10-12 23:32:01,272 | INFO     | monitor loop #308: job 0:6840224883 is in state 'finished'
[2025-10-13 08:32:38] 2025-10-12 23:32:01,273 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:32:38] 2025-10-12 23:32:01,482 | INFO     | time since job start (4115s) is within the limit (172800.0s)
[2025-10-13 08:32:38] 2025-10-12 23:32:03,487 | INFO     | time since job start (4117s) is within the limit (172800.0s)
[2025-10-13 08:32:38] 2025-10-12 23:32:03,775 | INFO     | monitor loop #309: job 0:6840224883 is in state 'finished'
[2025-10-13 08:32:38] 2025-10-12 23:32:03,776 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:32:38] 2025-10-12 23:32:05,492 | INFO     | time since job start (4119s) is within the limit (172800.0s)
[2025-10-13 08:32:38] 2025-10-12 23:32:06,278 | INFO     | monitor loop #310: job 0:6840224883 is in state 'finished'
[2025-10-13 08:32:38] 2025-10-12 23:32:06,279 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:32:38] 2025-10-12 23:32:07,497 | INFO     | time since job start (4121s) is within the limit (172800.0s)
[2025-10-13 08:32:38] 2025-10-12 23:32:08,781 | INFO     | monitor loop #311: job 0:6840224883 is in state 'finished'
[2025-10-13 08:32:38] 2025-10-12 23:32:08,782 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:32:38] 2025-10-12 23:32:09,233 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 08:32:38] 2025-10-12 23:32:09,235 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 4061.1169
[2025-10-13 08:32:38] 2025-10-12 23:32:09,236 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6840224883/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 08:32:38] 2025-10-12 23:32:09,237 | INFO     | extracted standard info from prmon json
[2025-10-13 08:32:38] 2025-10-12 23:32:09,237 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 08:32:38] 2025-10-12 23:32:09,237 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 08:32:38] 2025-10-12 23:32:09,237 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 08:32:38] 2025-10-12 23:32:09,237 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 08:32:38] 2025-10-12 23:32:09,238 | INFO     | fitting pss+swap vs Time
[2025-10-13 08:32:38] 2025-10-12 23:32:09,238 | INFO     | sum of square deviations: 66959395.0
[2025-10-13 08:32:38] 2025-10-12 23:32:09,238 | INFO     | sum of deviations: -5683640626.5
[2025-10-13 08:32:38] 2025-10-12 23:32:09,238 | INFO     | mean x: 1760309929.5
[2025-10-13 08:32:38] 2025-10-12 23:32:09,238 | INFO     | mean y: 2599155.9166666665
[2025-10-13 08:32:38] 2025-10-12 23:32:09,238 | INFO     | -- intersect: 149421049405.31857
[2025-10-13 08:32:38] 2025-10-12 23:32:09,238 | INFO     | intersect: 149421049405.31857
[2025-10-13 08:32:38] 2025-10-12 23:32:09,238 | INFO     | chi2: 0.039355369147757176
[2025-10-13 08:32:38] 2025-10-12 23:32:09,238 | INFO     | -- intersect: 149421049405.31857
[2025-10-13 08:32:38] 2025-10-12 23:32:09,238 | INFO     | current memory leak: -84.88 B/s (using 60 data points, chi2=0.04)
[2025-10-13 08:32:38] 2025-10-12 23:32:09,238 | INFO     | could have reported an average CPU frequency of 3039 MHz (6 samples)
[2025-10-13 08:32:38] 2025-10-12 23:32:09,238 | INFO     | ..............................
[2025-10-13 08:32:38] 2025-10-12 23:32:09,239 | INFO     | . Timing measurements:
[2025-10-13 08:32:38] 2025-10-12 23:32:09,239 | INFO     | . get job = 0 s
[2025-10-13 08:32:38] 2025-10-12 23:32:09,239 | INFO     | . initial setup = 21 s
[2025-10-13 08:32:38] 2025-10-12 23:32:09,239 | INFO     | . payload setup = 3 s
[2025-10-13 08:32:38] 2025-10-12 23:32:09,239 | INFO     | . stage-in = 0 s
[2025-10-13 08:32:38] 2025-10-12 23:32:09,239 | INFO     | . payload execution = 4082 s
[2025-10-13 08:32:38] 2025-10-12 23:32:09,239 | INFO     | . stage-out = 0 s
[2025-10-13 08:32:38] 2025-10-12 23:32:09,239 | INFO     | . log creation = 0 s
[2025-10-13 08:32:38] 2025-10-12 23:32:09,239 | INFO     | ..............................
[2025-10-13 08:32:38] 2025-10-12 23:32:09,503 | INFO     | time since job start (4123s) is within the limit (172800.0s)
[2025-10-13 08:32:38] 2025-10-12 23:32:09,666 | INFO     | 
[2025-10-13 08:32:38] 2025-10-12 23:32:09,666 | INFO     | job summary report
[2025-10-13 08:32:38] 2025-10-12 23:32:09,666 | INFO     | --------------------------------------------------
[2025-10-13 08:32:38] 2025-10-12 23:32:09,666 | INFO     | PanDA job id: 6840224883
[2025-10-13 08:32:38] 2025-10-12 23:32:09,666 | INFO     | task id: 46676269
[2025-10-13 08:32:38] 2025-10-12 23:32:09,666 | INFO     | errors: (none)
[2025-10-13 08:32:38] 2025-10-12 23:32:09,666 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 08:32:38] 2025-10-12 23:32:09,666 | INFO     | pilot state: finished 
[2025-10-13 08:32:38] 2025-10-12 23:32:09,667 | INFO     | transexitcode: 0
[2025-10-13 08:32:38] 2025-10-12 23:32:09,667 | INFO     | exeerrorcode: 0
[2025-10-13 08:32:38] 2025-10-12 23:32:09,667 | INFO     | exeerrordiag: 
[2025-10-13 08:32:38] 2025-10-12 23:32:09,667 | INFO     | exitcode: 0
[2025-10-13 08:32:38] 2025-10-12 23:32:09,667 | INFO     | exitmsg: OK
[2025-10-13 08:32:38] 2025-10-12 23:32:09,667 | INFO     | cpuconsumptiontime: 21770 s
[2025-10-13 08:32:38] 2025-10-12 23:32:09,667 | INFO     | nevents: 400
[2025-10-13 08:32:38] 2025-10-12 23:32:09,667 | INFO     | neventsw: 0
[2025-10-13 08:32:38] 2025-10-12 23:32:09,667 | INFO     | pid: 136612
[2025-10-13 08:32:38] 2025-10-12 23:32:09,667 | INFO     | pgrp: 136612
[2025-10-13 08:32:38] 2025-10-12 23:32:09,667 | INFO     | corecount: 6
[2025-10-13 08:32:38] 2025-10-12 23:32:09,667 | INFO     | event service: False
[2025-10-13 08:32:38] 2025-10-12 23:32:09,667 | INFO     | sizes: {0: 2348857, 3: 2349119, 11: 2349147, 4088: 2375074, 4089: 2384072, 4090: 2384128, 4110: 2384450}
[2025-10-13 08:32:38] 2025-10-12 23:32:09,667 | INFO     | --------------------------------------------------
[2025-10-13 08:32:38] 2025-10-12 23:32:09,667 | INFO     | 
[2025-10-13 08:32:38] 2025-10-12 23:32:09,667 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-13 08:32:38] 2025-10-12 23:32:09,675 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 08:32:38] 2025-10-12 23:32:09,675 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 08:32:38] 2025-10-12 23:32:09,676 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 08:32:38] 2025-10-12 23:32:09,676 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 08:32:38] 2025-10-12 23:32:09,676 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 08:32:38] 2025-10-12 23:32:09,676 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 08:32:38] 2025-10-12 23:32:09,676 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 08:32:38] 2025-10-12 23:32:09,676 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 08:32:38] 2025-10-12 23:32:09,676 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 08:32:38] 2025-10-12 23:32:09,676 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 08:32:38] 2025-10-12 23:32:09,676 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 08:32:38] 2025-10-12 23:32:09,676 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 08:32:38] 2025-10-12 23:32:09,676 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 08:32:38] 2025-10-12 23:32:09,676 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 08:32:38] 2025-10-12 23:32:09,676 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 08:32:38] 2025-10-12 23:32:09,676 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 08:32:38] 2025-10-12 23:32:09,676 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 08:32:38] 2025-10-12 23:32:09,676 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 08:32:38] 2025-10-12 23:32:09,676 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 08:32:38] 2025-10-12 23:32:09,676 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 08:32:38] 2025-10-12 23:32:09,676 | INFO     | job 6840224883 has completed (purged errors)
[2025-10-13 08:32:38] 2025-10-12 23:32:09,676 | INFO     | overall cleanup function is called
[2025-10-13 08:32:38] 2025-10-12 23:32:10,554 | INFO     | PID=127771 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 08:32:38] 2025-10-12 23:32:10,554 | INFO     | .. there are 3 such processes running
[2025-10-13 08:32:38] 2025-10-12 23:32:10,681 | INFO     | --- collectZombieJob: --- 10, [136612]
[2025-10-13 08:32:38] 2025-10-12 23:32:10,682 | INFO     | zombie collector waiting for pid 136612
[2025-10-13 08:32:38] 2025-10-12 23:32:10,682 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 08:32:38] 2025-10-12 23:32:10,682 | INFO     | collected zombie processes
[2025-10-13 08:32:38] 2025-10-12 23:32:10,682 | INFO     | will attempt to kill all subprocesses of pid=136612
[2025-10-13 08:32:38] 2025-10-12 23:32:10,718 | INFO     | process IDs to be killed: [136612] (in reverse order)
[2025-10-13 08:32:38] 2025-10-12 23:32:10,737 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 08:32:38] 2025-10-12 23:32:10,738 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 08:32:38] 2025-10-12 23:32:10,739 | INFO     | did not find any defunct processes belonging to 136612
[2025-10-13 08:32:38] 2025-10-12 23:32:10,741 | INFO     | did not find any defunct processes belonging to 136612
[2025-10-13 08:32:38] 2025-10-12 23:32:10,741 | INFO     | ready for new job
[2025-10-13 08:32:38] 2025-10-12 23:32:10,741 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 08:32:38] 2025-10-12 23:32:10,742 | INFO     | ***************************************
[2025-10-13 08:32:38] 2025-10-12 23:32:10,742 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 08:32:38] 2025-10-12 23:32:10,742 | INFO     | ***************************************
[2025-10-13 08:32:38] 2025-10-12 23:32:10,742 | INFO     | 
[2025-10-13 08:32:38] 2025-10-12 23:32:10,743 | INFO     | architecture information:
[2025-10-13 08:32:38] 2025-10-12 23:32:10,743 | INFO     | executing command: cat /etc/os-release
[2025-10-13 08:32:38] 2025-10-12 23:32:10,749 | INFO     | cat /etc/os-release:
[2025-10-13 08:32:38] NAME="CentOS Linux"
[2025-10-13 08:32:38] VERSION="7 (Core)"
[2025-10-13 08:32:38] ID="centos"
[2025-10-13 08:32:38] ID_LIKE="rhel fedora"
[2025-10-13 08:32:38] VERSION_ID="7"
[2025-10-13 08:32:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 08:32:38] ANSI_COLOR="0;31"
[2025-10-13 08:32:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 08:32:38] HOME_URL="https://www.centos.org/"
[2025-10-13 08:32:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 08:32:38] 
[2025-10-13 08:32:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 08:32:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 08:32:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 08:32:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 08:32:38] 
[2025-10-13 08:32:38] 2025-10-12 23:32:10,749 | INFO     | ***************************************
[2025-10-13 08:32:38] 2025-10-12 23:32:11,252 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-13 08:32:38] 2025-10-12 23:32:11,263 | INFO     | sufficient remaining disk space (280358813696 B)
[2025-10-13 08:32:38] 2025-10-12 23:32:11,264 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 08:32:38] 2025-10-12 23:32:11,264 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 08:32:38] 2025-10-12 23:32:11,264 | INFO     | update_server=False
[2025-10-13 08:32:38] 2025-10-12 23:32:11,264 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 08:32:38] 2025-10-12 23:32:11,264 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:32:38] 2025-10-12 23:32:11,264 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 08:32:38] 2025-10-12 23:32:11,265 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 08:32:38] 2025-10-12 23:32:11,265 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 08:32:38] 2025-10-12 23:32:11,265 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 08:32:38] 2025-10-12 23:32:11,284 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 08:32:38] 2025-10-12 23:32:11,285 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 08:32:38] 2025-10-12 23:32:11,285 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:32:38] 2025-10-12 23:32:11,285 | INFO     | will abort loop
[2025-10-13 08:32:38] 2025-10-12 23:32:11,444 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 08:32:38] 2025-10-12 23:32:12,261 | INFO     | all data control threads have been joined
[2025-10-13 08:32:38] 2025-10-12 23:32:12,269 | INFO     | [job] retrieve thread has finished
[2025-10-13 08:32:38] 2025-10-12 23:32:12,270 | INFO     | [job] queue monitor thread has finished
[2025-10-13 08:32:38] 2025-10-12 23:32:12,290 | INFO     | [job] job monitor thread has finished
[2025-10-13 08:32:38] 2025-10-12 23:32:12,353 | INFO     | [data] copytool_in thread has finished
[2025-10-13 08:32:38] 2025-10-12 23:32:12,398 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 08:32:38] 2025-10-12 23:32:12,405 | INFO     | all payload control threads have been joined
[2025-10-13 08:32:38] 2025-10-12 23:32:12,466 | INFO     | [job] validate thread has finished
[2025-10-13 08:32:38] 2025-10-12 23:32:12,571 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 08:32:38] 2025-10-12 23:32:12,610 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 08:32:38] 2025-10-12 23:32:12,689 | INFO     | [payload] validate_post thread has finished
[2025-10-13 08:32:38] 2025-10-12 23:32:12,699 | INFO     | all job control threads have been joined
[2025-10-13 08:32:38] 2025-10-12 23:32:13,253 | INFO     | [payload] failed_post thread has finished
[2025-10-13 08:32:38] 2025-10-12 23:32:13,266 | INFO     | [data] control thread has finished
[2025-10-13 08:32:38] 2025-10-12 23:32:13,411 | INFO     | [payload] control thread has finished
[2025-10-13 08:32:38] 2025-10-12 23:32:13,449 | INFO     | [data] copytool_out thread has finished
[2025-10-13 08:32:38] 2025-10-12 23:32:13,662 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 08:32:38] 2025-10-12 23:32:13,705 | INFO     | [job] control thread has finished
[2025-10-13 08:32:38] 2025-10-12 23:32:17,667 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 08:32:38] 2025-10-12 23:32:21,822 | INFO     | job.realtimelogging is not enabled
[2025-10-13 08:32:38] 2025-10-12 23:32:22,827 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 08:32:38] 2025-10-12 23:32:32,620 | INFO     | [monitor] cgroup control has ended
[2025-10-13 08:32:38] 2025-10-12 23:32:33,470 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140484580013888)>', '<ExcThread(monitor, started 140484299163392)>']
[2025-10-13 08:32:38] 2025-10-12 23:32:34,374 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 08:32:38] 2025-10-12 23:32:34,375 | INFO     | [monitor] control thread has ended
[2025-10-13 08:32:38] 2025-10-12 23:32:38,495 | INFO     | all workflow threads have been joined
[2025-10-13 08:32:38] 2025-10-12 23:32:38,496 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 08:32:38] 2025-10-12 23:32:38,496 | INFO     | traces error code: 0
[2025-10-13 08:32:38] 2025-10-12 23:32:38,496 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 08:32:38] 2025-10-12 23:32:38,598 [wrapper] ==== pilot stdout END ====
[2025-10-13 08:32:38] 2025-10-12 23:32:38,600 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 08:32:38] 2025-10-12 23:32:38,602 [wrapper] pilotpid: 127771
[2025-10-13 08:32:38] 2025-10-12 23:32:38,604 [wrapper] Pilot exit status: 0
[2025-10-13 08:32:38] 2025-10-12 23:32:38,614 [wrapper] pandaids: 6840224883
[2025-10-13 08:32:38] 2025-10-12 23:32:38,634 [wrapper] cleanup supervisor_pilot  192015 127772
[2025-10-13 08:32:38] 2025-10-12 23:32:38,636 [wrapper] Test setup, not cleaning
[2025-10-13 08:32:38] 2025-10-12 23:32:38,638 [wrapper] apfmon messages muted
[2025-10-13 08:32:38] 2025-10-12 23:32:38,640 [wrapper] ==== wrapper stdout END ====
[2025-10-13 08:32:38] 2025-10-12 23:32:38,642 [wrapper] ==== wrapper stderr END ====
[2025-10-13 08:32:38]  *** Error codes and diagnostics ***
[2025-10-13 08:32:38]     "exeErrorCode": 0,
[2025-10-13 08:32:38]     "exeErrorDiag": "",
[2025-10-13 08:32:38]     "pilotErrorCode": 0,
[2025-10-13 08:32:38]     "pilotErrorDiag": "",
[2025-10-13 08:32:38]  *** Listing of results directory ***
[2025-10-13 08:32:38] total 409552
[2025-10-13 08:32:38] -rw-r--r--. 1 boinc boinc    557409 Oct 13 00:00 pilot3.tar.gz
[2025-10-13 08:32:38] -rwx------. 1 boinc boinc     36292 Oct 13 00:24 runpilot2-wrapper.sh
[2025-10-13 08:32:38] -rw-r--r--. 1 boinc boinc      5112 Oct 13 00:24 queuedata.json
[2025-10-13 08:32:38] -rw-r--r--. 1 boinc boinc       100 Oct 13 07:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 08:32:38] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 07:22 run_atlas
[2025-10-13 08:32:38] -rw-r--r--. 1 boinc boinc       105 Oct 13 07:22 job.xml
[2025-10-13 08:32:38] -rw-r--r--. 1 boinc boinc      9509 Oct 13 07:22 init_data.xml
[2025-10-13 08:32:38] -rw-r--r--. 2 boinc boinc 221053570 Oct 13 07:22 EVNT.46676267._004569.pool.root.1
[2025-10-13 08:32:38] -rw-r--r--. 2 boinc boinc     15120 Oct 13 07:22 start_atlas.sh
[2025-10-13 08:32:38] drwxrwx--x. 2 boinc boinc        68 Oct 13 07:22 shared
[2025-10-13 08:32:38] -rw-r--r--. 2 boinc boinc    569678 Oct 13 07:22 input.tar.gz
[2025-10-13 08:32:38] -rw-r--r--. 1 boinc boinc         0 Oct 13 07:22 boinc_lockfile
[2025-10-13 08:32:38] -rw-r--r--. 1 boinc boinc      2550 Oct 13 07:22 pandaJob.out
[2025-10-13 08:32:38] -rw-------. 1 boinc boinc    975603 Oct 13 07:23 agis_schedconf.cvmfs.json
[2025-10-13 08:32:38] -rw-------. 1 boinc boinc   1560580 Oct 13 07:23 agis_ddmendpoints.agis.ALL.json
[2025-10-13 08:32:38] drwx------. 5 boinc boinc      4096 Oct 13 07:23 pilot3
[2025-10-13 08:32:38] -rw-------. 1 boinc boinc 192625747 Oct 13 08:31 HITS.46676269._082178.pool.root.1
[2025-10-13 08:32:38] -rw-------. 1 boinc boinc        95 Oct 13 08:31 pilot_heartbeat.json
[2025-10-13 08:32:38] -rw-------. 1 boinc boinc      1021 Oct 13 08:31 memory_monitor_summary.json
[2025-10-13 08:32:38] -rw-r--r--. 1 boinc boinc       529 Oct 13 08:31 boinc_task_state.xml
[2025-10-13 08:32:38] -rw-------. 1 boinc boinc    288583 Oct 13 08:31 log.46676269._082178.job.log.tgz.1
[2025-10-13 08:32:38] -rw-------. 1 boinc boinc      7769 Oct 13 08:32 heartbeat.json
[2025-10-13 08:32:38] -rw-r--r--. 1 boinc boinc      8192 Oct 13 08:32 boinc_mmap_file
[2025-10-13 08:32:38] -rw-r--r--. 1 boinc boinc        27 Oct 13 08:32 wrapper_checkpoint.txt
[2025-10-13 08:32:38] -rw-------. 1 boinc boinc      4811 Oct 13 08:32 pilotlog.txt
[2025-10-13 08:32:38] -rw-------. 1 boinc boinc    616942 Oct 13 08:32 log.46676269._082178.job.log.1
[2025-10-13 08:32:38] -rw-------. 1 boinc boinc       357 Oct 13 08:32 output.list
[2025-10-13 08:32:38] -rw-r--r--. 1 boinc boinc       620 Oct 13 08:32 runtime_log
[2025-10-13 08:32:38] -rw-------. 1 boinc boinc    921600 Oct 13 08:32 result.tar.gz
[2025-10-13 08:32:38] -rw-r--r--. 1 boinc boinc      8661 Oct 13 08:32 runtime_log.err
[2025-10-13 08:32:38] -rw-------. 1 boinc boinc       642 Oct 13 08:32 PkYNDmX7CS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmIHUMDmbknahn.diag
[2025-10-13 08:32:38] -rw-r--r--. 1 boinc boinc     21864 Oct 13 08:32 stderr.txt
[2025-10-13 08:32:38] HITS file was successfully produced:
[2025-10-13 08:32:38] -rw-------. 1 boinc boinc 192625747 Oct 13 08:31 shared/HITS.pool.root.1
[2025-10-13 08:32:38]  *** Contents of shared directory: ***
[2025-10-13 08:32:38] total 405464
[2025-10-13 08:32:38] -rw-r--r--. 2 boinc boinc 221053570 Oct 13 07:22 ATLAS.root_0
[2025-10-13 08:32:38] -rw-r--r--. 2 boinc boinc     15120 Oct 13 07:22 start_atlas.sh
[2025-10-13 08:32:38] -rw-r--r--. 2 boinc boinc    569678 Oct 13 07:22 input.tar.gz
[2025-10-13 08:32:38] -rw-------. 1 boinc boinc 192625747 Oct 13 08:31 HITS.pool.root.1
[2025-10-13 08:32:38] -rw-------. 1 boinc boinc    921600 Oct 13 08:32 result.tar.gz
08:32:40 (124005): run_atlas exited; CPU time 21794.992618
08:32:40 (124005): called boinc_finish(0)

</stderr_txt>
]]>

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