Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:53:04 (28427): wrapper (7.7.26015): starting
23:53:04 (28427): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 23:53:04] Arguments: --nthreads 8
[2025-10-13 23:53:04] Threads: 8
[2025-10-13 23:53:04] Checking for CVMFS
[2025-10-13 23:53:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 23:53:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 23:53:05] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 23:53:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 23:53:06] 2.11.2.0 31038 222579 137280 151674 3 60 16604091 25165825 4632 130560 0 117775383 99.897 60573331 3292 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-13 23:53:06] CVMFS is ok
[2025-10-13 23:53:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 23:53:06] Checking for apptainer binary...
[2025-10-13 23:53:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 23:53:06] Running /usr/bin/apptainer --version
[2025-10-13 23:53:06] apptainer version 1.3.2-1.el7
[2025-10-13 23:53:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 23:53:14] cg-vwn486.simple-grid.lan
[2025-10-13 23:53:14] apptainer works
[2025-10-13 23:53:14] Set ATHENA_PROC_NUMBER=8
[2025-10-13 23:53:14] Set ATHENA_CORE_NUMBER=8
[2025-10-13 23:53:14] Starting ATLAS job with PandaID=6840429390
[2025-10-13 23:53:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 03:35:20]  *** The last 200 lines of the pilot log: ***
[2025-10-14 03:35:20] 2025-10-14 01:34:34,038 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-14 03:35:20] 2025-10-14 01:34:34,039 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-10-14 03:35:20] 2025-10-14 01:34:34,040 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6840429390/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 03:35:20] 2025-10-14 01:34:34,041 | INFO     | extracted standard info from prmon json
[2025-10-14 03:35:20] 2025-10-14 01:34:34,041 | INFO     | extracted standard memory fields from prmon json
[2025-10-14 03:35:20] 2025-10-14 01:34:34,041 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-14 03:35:20] 2025-10-14 01:34:34,042 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-14 03:35:20] 2025-10-14 01:34:34,042 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-14 03:35:20] 2025-10-14 01:34:34,046 | INFO     | fitting pss+swap vs Time
[2025-10-14 03:35:20] 2025-10-14 01:34:34,046 | INFO     | sum of square deviations: 2671343110.0
[2025-10-14 03:35:20] 2025-10-14 01:34:34,047 | INFO     | sum of deviations: 58386440177.0
[2025-10-14 03:35:20] 2025-10-14 01:34:34,048 | INFO     | mean x: 1760399301.0
[2025-10-14 03:35:20] 2025-10-14 01:34:34,048 | INFO     | mean y: 2440296.2975609754
[2025-10-14 03:35:20] 2025-10-14 01:34:34,048 | INFO     | -- intersect: -38473878260.72566
[2025-10-14 03:35:20] 2025-10-14 01:34:34,048 | INFO     | intersect: -38473878260.72566
[2025-10-14 03:35:20] 2025-10-14 01:34:34,048 | INFO     | chi2: 4.735192871369971
[2025-10-14 03:35:20] 2025-10-14 01:34:34,048 | INFO     | sum of square deviations: 2480604650.0
[2025-10-14 03:35:20] 2025-10-14 01:34:34,050 | INFO     | sum of deviations: 70441810335.99998
[2025-10-14 03:35:20] 2025-10-14 01:34:34,050 | INFO     | mean x: 1760399148.5
[2025-10-14 03:35:20] 2025-10-14 01:34:34,050 | INFO     | mean y: 2449716.61
[2025-10-14 03:35:20] 2025-10-14 01:34:34,050 | INFO     | -- intersect: -49987661740.40628
[2025-10-14 03:35:20] 2025-10-14 01:34:34,050 | INFO     | intersect: -49987661740.40628
[2025-10-14 03:35:20] 2025-10-14 01:34:34,050 | INFO     | chi2: 3.9758730833790077
[2025-10-14 03:35:20] 2025-10-14 01:34:34,051 | INFO     | current chi2=3.9758730833790077 (change=16.03566757717473 %)
[2025-10-14 03:35:20] 2025-10-14 01:34:34,051 | INFO     | right removable region: 199
[2025-10-14 03:35:20] 2025-10-14 01:34:34,051 | INFO     | sum of square deviations: 2480604650.0
[2025-10-14 03:35:20] 2025-10-14 01:34:34,052 | INFO     | sum of deviations: -5290568765.499999
[2025-10-14 03:35:20] 2025-10-14 01:34:34,052 | INFO     | mean x: 1760399453.5
[2025-10-14 03:35:20] 2025-10-14 01:34:34,052 | INFO     | mean y: 2491087.475
[2025-10-14 03:35:20] 2025-10-14 01:34:34,053 | INFO     | -- intersect: 3757025032.854151
[2025-10-14 03:35:20] 2025-10-14 01:34:34,053 | INFO     | intersect: 3757025032.854151
[2025-10-14 03:35:20] 2025-10-14 01:34:34,053 | INFO     | chi2: 0.9228466098361897
[2025-10-14 03:35:20] 2025-10-14 01:34:34,053 | INFO     | current chi2=0.9228466098361897 (change=80.51089712911325 %)
[2025-10-14 03:35:20] 2025-10-14 01:34:34,053 | INFO     | sum of square deviations: 2299168690.0
[2025-10-14 03:35:20] 2025-10-14 01:34:34,055 | INFO     | sum of deviations: -9056967253.0
[2025-10-14 03:35:20] 2025-10-14 01:34:34,055 | INFO     | mean x: 1760399606.0
[2025-10-14 03:35:20] 2025-10-14 01:34:34,055 | INFO     | mean y: 2494152.728205128
[2025-10-14 03:35:20] 2025-10-14 01:34:34,055 | INFO     | -- intersect: 6937123026.669639
[2025-10-14 03:35:20] 2025-10-14 01:34:34,055 | INFO     | intersect: 6937123026.669639
[2025-10-14 03:35:20] 2025-10-14 01:34:34,055 | INFO     | chi2: 0.8474287940738908
[2025-10-14 03:35:20] 2025-10-14 01:34:34,055 | INFO     | current chi2=0.8474287940738908 (change=8.172302412823077 %)
[2025-10-14 03:35:20] 2025-10-14 01:34:34,055 | INFO     | left removable region: 20
[2025-10-14 03:35:20] 2025-10-14 01:34:34,056 | INFO     | sum of square deviations: 1778377530.0
[2025-10-14 03:35:20] 2025-10-14 01:34:34,057 | INFO     | sum of deviations: 6318394579.000002
[2025-10-14 03:35:20] 2025-10-14 01:34:34,057 | INFO     | mean x: 1760399728.0
[2025-10-14 03:35:20] 2025-10-14 01:34:34,057 | INFO     | mean y: 2503322.4636871507
[2025-10-14 03:35:20] 2025-10-14 01:34:34,057 | INFO     | -- intersect: -6252017953.605449
[2025-10-14 03:35:20] 2025-10-14 01:34:34,057 | INFO     | intersect: -6252017953.605449
[2025-10-14 03:35:20] 2025-10-14 01:34:34,057 | INFO     | chi2: 0.0003859261661346393
[2025-10-14 03:35:20] 2025-10-14 01:34:34,058 | INFO     | -- intersect: -6252017953.605449
[2025-10-14 03:35:20] 2025-10-14 01:34:34,058 | INFO     | current memory leak: 3.55 B/s (using 179 data points, chi2=0.00)
[2025-10-14 03:35:20] 2025-10-14 01:34:34,058 | INFO     | could have reported an average CPU frequency of 2249 MHz (10 samples)
[2025-10-14 03:35:20] 2025-10-14 01:34:34,058 | INFO     | ..............................
[2025-10-14 03:35:20] 2025-10-14 01:34:34,058 | INFO     | . Timing measurements:
[2025-10-14 03:35:20] 2025-10-14 01:34:34,059 | INFO     | . get job = 0 s
[2025-10-14 03:35:20] 2025-10-14 01:34:34,059 | INFO     | . initial setup = 6 s
[2025-10-14 03:35:20] 2025-10-14 01:34:34,059 | INFO     | . payload setup = 125 s
[2025-10-14 03:35:20] 2025-10-14 01:34:34,059 | INFO     | . stage-in = 0 s
[2025-10-14 03:35:20] 2025-10-14 01:34:34,059 | INFO     | . payload execution = 12654 s
[2025-10-14 03:35:20] 2025-10-14 01:34:34,059 | INFO     | . stage-out = 6 s
[2025-10-14 03:35:20] 2025-10-14 01:34:34,059 | INFO     | . log creation = 1 s
[2025-10-14 03:35:20] 2025-10-14 01:34:34,059 | INFO     | ..............................
[2025-10-14 03:35:20] 2025-10-14 01:34:34,159 | INFO     | 
[2025-10-14 03:35:20] 2025-10-14 01:34:34,159 | INFO     | job summary report
[2025-10-14 03:35:20] 2025-10-14 01:34:34,159 | INFO     | --------------------------------------------------
[2025-10-14 03:35:20] 2025-10-14 01:34:34,159 | INFO     | PanDA job id: 6840429390
[2025-10-14 03:35:20] 2025-10-14 01:34:34,159 | INFO     | task id: 46676269
[2025-10-14 03:35:20] 2025-10-14 01:34:34,159 | INFO     | errors: (none)
[2025-10-14 03:35:20] 2025-10-14 01:34:34,159 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-14 03:35:20] 2025-10-14 01:34:34,159 | INFO     | pilot state: finished 
[2025-10-14 03:35:20] 2025-10-14 01:34:34,159 | INFO     | transexitcode: 0
[2025-10-14 03:35:20] 2025-10-14 01:34:34,159 | INFO     | exeerrorcode: 0
[2025-10-14 03:35:20] 2025-10-14 01:34:34,160 | INFO     | exeerrordiag: 
[2025-10-14 03:35:20] 2025-10-14 01:34:34,160 | INFO     | exitcode: 0
[2025-10-14 03:35:20] 2025-10-14 01:34:34,160 | INFO     | exitmsg: OK
[2025-10-14 03:35:20] 2025-10-14 01:34:34,160 | INFO     | cpuconsumptiontime: 47917 s
[2025-10-14 03:35:20] 2025-10-14 01:34:34,160 | INFO     | nevents: 400
[2025-10-14 03:35:20] 2025-10-14 01:34:34,160 | INFO     | neventsw: 0
[2025-10-14 03:35:20] 2025-10-14 01:34:34,160 | INFO     | pid: 6366
[2025-10-14 03:35:20] 2025-10-14 01:34:34,160 | INFO     | pgrp: 6366
[2025-10-14 03:35:20] 2025-10-14 01:34:34,160 | INFO     | corecount: 8
[2025-10-14 03:35:20] 2025-10-14 01:34:34,160 | INFO     | event service: False
[2025-10-14 03:35:20] 2025-10-14 01:34:34,160 | INFO     | sizes: {0: 2348029, 1: 2348715, 2: 2348886, 12: 2348914, 23: 2348942, 34: 2348970, 45: 2349126, 55: 2349154, 66: 2349182, 77: 2349210, 87: 2349266, 95: 2349836, 98
[2025-10-14 03:35:20] 2025-10-14 01:34:34,160 | INFO     | --------------------------------------------------
[2025-10-14 03:35:20] 2025-10-14 01:34:34,161 | INFO     | 
[2025-10-14 03:35:20] 2025-10-14 01:34:34,161 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-10-14 03:35:20] 2025-10-14 01:34:34,648 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-14 03:35:20] 2025-10-14 01:34:34,648 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-14 03:35:20] 2025-10-14 01:34:34,648 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-14 03:35:20] 2025-10-14 01:34:34,648 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-14 03:35:20] 2025-10-14 01:34:34,648 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-14 03:35:20] 2025-10-14 01:34:34,648 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-14 03:35:20] 2025-10-14 01:34:34,648 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-14 03:35:20] 2025-10-14 01:34:34,649 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-14 03:35:20] 2025-10-14 01:34:34,649 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-14 03:35:20] 2025-10-14 01:34:34,649 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-14 03:35:20] 2025-10-14 01:34:34,649 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-14 03:35:20] 2025-10-14 01:34:34,649 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-14 03:35:20] 2025-10-14 01:34:34,649 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-14 03:35:20] 2025-10-14 01:34:34,649 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-14 03:35:20] 2025-10-14 01:34:34,649 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-14 03:35:20] 2025-10-14 01:34:34,649 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-14 03:35:20] 2025-10-14 01:34:34,649 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-14 03:35:20] 2025-10-14 01:34:34,649 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-14 03:35:20] 2025-10-14 01:34:34,649 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 03:35:20] 2025-10-14 01:34:34,650 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 03:35:20] 2025-10-14 01:34:34,650 | INFO     | job 6840429390 has completed (purged errors)
[2025-10-14 03:35:20] 2025-10-14 01:34:34,650 | INFO     | overall cleanup function is called
[2025-10-14 03:35:20] 2025-10-14 01:34:35,658 | INFO     | --- collectZombieJob: --- 10, [6366]
[2025-10-14 03:35:20] 2025-10-14 01:34:35,659 | INFO     | zombie collector waiting for pid 6366
[2025-10-14 03:35:20] 2025-10-14 01:34:35,659 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 03:35:20] 2025-10-14 01:34:35,659 | INFO     | collected zombie processes
[2025-10-14 03:35:20] 2025-10-14 01:34:35,659 | INFO     | will attempt to kill all subprocesses of pid=6366
[2025-10-14 03:35:20] 2025-10-14 01:34:35,784 | INFO     | process IDs to be killed: [6366] (in reverse order)
[2025-10-14 03:35:20] 2025-10-14 01:34:36,568 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 03:35:20] 2025-10-14 01:34:36,568 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 03:35:20] 2025-10-14 01:34:36,571 | INFO     | did not find any defunct processes belonging to 6366
[2025-10-14 03:35:20] 2025-10-14 01:34:36,573 | INFO     | did not find any defunct processes belonging to 6366
[2025-10-14 03:35:20] 2025-10-14 01:34:36,574 | INFO     | ready for new job
[2025-10-14 03:35:20] 2025-10-14 01:34:36,574 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 03:35:20] 2025-10-14 01:34:36,576 | INFO     | ***************************************
[2025-10-14 03:35:20] 2025-10-14 01:34:36,576 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-14 03:35:20] 2025-10-14 01:34:36,576 | INFO     | ***************************************
[2025-10-14 03:35:20] 2025-10-14 01:34:36,576 | INFO     | 
[2025-10-14 03:35:20] 2025-10-14 01:34:36,577 | INFO     | pilot is running in a VM
[2025-10-14 03:35:20] 2025-10-14 01:34:36,577 | INFO     | architecture information:
[2025-10-14 03:35:20] 2025-10-14 01:34:36,580 | INFO     | executing command: cat /etc/os-release
[2025-10-14 03:35:20] 2025-10-14 01:34:36,761 | INFO     | cat /etc/os-release:
[2025-10-14 03:35:20] NAME="CentOS Linux"
[2025-10-14 03:35:20] VERSION="7 (Core)"
[2025-10-14 03:35:20] ID="centos"
[2025-10-14 03:35:20] ID_LIKE="rhel fedora"
[2025-10-14 03:35:20] VERSION_ID="7"
[2025-10-14 03:35:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 03:35:20] ANSI_COLOR="0;31"
[2025-10-14 03:35:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 03:35:20] HOME_URL="https://www.centos.org/"
[2025-10-14 03:35:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 03:35:20] 
[2025-10-14 03:35:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 03:35:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 03:35:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 03:35:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 03:35:20] 
[2025-10-14 03:35:20] 2025-10-14 01:34:36,761 | INFO     | ***************************************
[2025-10-14 03:35:20] 2025-10-14 01:34:37,264 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-10-14 03:35:20] 2025-10-14 01:34:37,400 | INFO     | sufficient remaining disk space (495484665856 B)
[2025-10-14 03:35:20] 2025-10-14 01:34:37,400 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 03:35:20] 2025-10-14 01:34:37,400 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 03:35:20] 2025-10-14 01:34:37,400 | INFO     | update_server=False
[2025-10-14 03:35:20] 2025-10-14 01:34:37,400 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 03:35:20] 2025-10-14 01:34:37,472 | INFO     | all data control threads have been joined
[2025-10-14 03:35:20] 2025-10-14 01:34:37,668 | INFO     | all payload control threads have been joined
[2025-10-14 03:35:20] 2025-10-14 01:34:37,882 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-14 03:35:20] 2025-10-14 01:34:37,883 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-14 03:35:20] 2025-10-14 01:34:37,883 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 03:35:20] 2025-10-14 01:34:37,883 | INFO     | will abort loop
[2025-10-14 03:35:20] 2025-10-14 01:34:38,089 | INFO     | all job control threads have been joined
[2025-10-14 03:35:20] 2025-10-14 01:34:38,223 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 03:35:20] 2025-10-14 01:34:38,406 | INFO     | [job] retrieve thread has finished
[2025-10-14 03:35:20] 2025-10-14 01:34:38,414 | INFO     | [payload] failed_post thread has finished
[2025-10-14 03:35:20] 2025-10-14 01:34:38,477 | INFO     | [data] control thread has finished
[2025-10-14 03:35:20] 2025-10-14 01:34:38,592 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 03:35:20] 2025-10-14 01:34:38,674 | INFO     | [payload] control thread has finished
[2025-10-14 03:35:20] 2025-10-14 01:34:38,888 | INFO     | [job] job monitor thread has finished
[2025-10-14 03:35:20] 2025-10-14 01:34:38,954 | INFO     | [job] validate thread has finished
[2025-10-14 03:35:20] 2025-10-14 01:34:39,095 | INFO     | [job] control thread has finished
[2025-10-14 03:35:20] 2025-10-14 01:34:39,154 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 03:35:20] 2025-10-14 01:34:39,175 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 03:35:20] 2025-10-14 01:34:39,217 | INFO     | [data] copytool_in thread has finished
[2025-10-14 03:35:20] 2025-10-14 01:34:39,281 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 03:35:20] 2025-10-14 01:34:39,282 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 03:35:20] 2025-10-14 01:34:39,633 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 03:35:20] 2025-10-14 01:34:39,980 | INFO     | [payload] validate_post thread has finished
[2025-10-14 03:35:20] 2025-10-14 01:34:40,181 | INFO     | [job] queue monitor thread has finished
[2025-10-14 03:35:20] 2025-10-14 01:34:40,230 | INFO     | [data] copytool_out thread has finished
[2025-10-14 03:35:20] 2025-10-14 01:34:43,290 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 03:35:20] 2025-10-14 01:35:06,211 | INFO     | PID=32226 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-14 03:35:20] 2025-10-14 01:35:06,211 | INFO     | .. there are 9 such processes running
[2025-10-14 03:35:20] 2025-10-14 01:35:06,212 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 03:35:20] 2025-10-14 01:35:06,212 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 03:35:20] 2025-10-14 01:35:06,212 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 03:35:20] 2025-10-14 01:35:09,338 | INFO     | [monitor] cgroup control has ended
[2025-10-14 03:35:20] 2025-10-14 01:35:11,187 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140359949944640)>', '<ExcThread(monitor, started 140359480874752)>']
[2025-10-14 03:35:20] 2025-10-14 01:35:11,242 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 03:35:20] 2025-10-14 01:35:11,243 | INFO     | [monitor] control thread has ended
[2025-10-14 03:35:20] 2025-10-14 01:35:16,215 | INFO     | all workflow threads have been joined
[2025-10-14 03:35:20] 2025-10-14 01:35:16,215 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 03:35:20] 2025-10-14 01:35:16,216 | INFO     | traces error code: 0
[2025-10-14 03:35:20] 2025-10-14 01:35:16,216 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 03:35:20] 2025-10-14 01:35:16,556 [wrapper] ==== pilot stdout END ====
[2025-10-14 03:35:20] 2025-10-14 01:35:16,668 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 03:35:20] 2025-10-14 01:35:16,763 [wrapper] pilotpid: 32226
[2025-10-14 03:35:20] 2025-10-14 01:35:16,834 [wrapper] Pilot exit status: 0
[2025-10-14 03:35:20] 2025-10-14 01:35:17,213 [wrapper] pandaids: 6840429390
[2025-10-14 03:35:20] 2025-10-14 01:35:18,245 [wrapper] cleanup supervisor_pilot 30279 32227
[2025-10-14 03:35:20] 2025-10-14 01:35:18,371 [wrapper] Test setup, not cleaning
[2025-10-14 03:35:20] 2025-10-14 01:35:18,492 [wrapper] apfmon messages muted
[2025-10-14 03:35:20] 2025-10-14 01:35:18,574 [wrapper] ==== wrapper stdout END ====
[2025-10-14 03:35:20] 2025-10-14 01:35:18,685 [wrapper] ==== wrapper stderr END ====
[2025-10-14 03:35:20]  *** Error codes and diagnostics ***
[2025-10-14 03:35:20]     "exeErrorCode": 0,
[2025-10-14 03:35:20]     "exeErrorDiag": "",
[2025-10-14 03:35:20]     "pilotErrorCode": 0,
[2025-10-14 03:35:20]     "pilotErrorDiag": "",
[2025-10-14 03:35:20]  *** Listing of results directory ***
[2025-10-14 03:35:20] total 413876
[2025-10-14 03:35:20] -rw-r--r--. 1 boinc boinc    557409 Oct 12 19:17 pilot3.tar.gz
[2025-10-14 03:35:20] -rw-r--r--. 1 boinc boinc      5112 Oct 12 19:24 queuedata.json
[2025-10-14 03:35:20] -rwx------. 1 boinc boinc     36292 Oct 12 19:24 runpilot2-wrapper.sh
[2025-10-14 03:35:20] -rw-r--r--. 1 boinc boinc       100 Oct 13 23:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 03:35:20] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 23:53 run_atlas
[2025-10-14 03:35:20] -rw-r--r--. 1 boinc boinc       105 Oct 13 23:53 job.xml
[2025-10-14 03:35:20] -rw-r--r--. 1 boinc boinc      6388 Oct 13 23:53 init_data.xml
[2025-10-14 03:35:20] -rw-r--r--. 2 boinc boinc 221045243 Oct 13 23:53 EVNT.46676267._004814.pool.root.1
[2025-10-14 03:35:20] -rw-r--r--. 2 boinc boinc     15120 Oct 13 23:53 start_atlas.sh
[2025-10-14 03:35:20] drwxrwx--x. 2 boinc boinc        68 Oct 13 23:53 shared
[2025-10-14 03:35:20] -rw-r--r--. 2 boinc boinc    569680 Oct 13 23:53 input.tar.gz
[2025-10-14 03:35:20] -rw-r--r--. 1 boinc boinc         0 Oct 13 23:53 boinc_lockfile
[2025-10-14 03:35:20] -rw-r--r--. 1 boinc boinc      2550 Oct 13 23:53 pandaJob.out
[2025-10-14 03:35:20] -rw-------. 1 boinc boinc    972791 Oct 13 23:56 agis_schedconf.cvmfs.json
[2025-10-14 03:35:20] drwx------. 5 boinc boinc      4096 Oct 13 23:56 pilot3
[2025-10-14 03:35:20] -rw-------. 1 boinc boinc 194485666 Oct 14 03:31 HITS.46676269._084736.pool.root.1
[2025-10-14 03:35:20] -rw-r--r--. 1 boinc boinc       531 Oct 14 03:32 boinc_task_state.xml
[2025-10-14 03:35:20] -rw-------. 1 boinc boinc      1026 Oct 14 03:32 memory_monitor_summary.json
[2025-10-14 03:35:20] -rw-------. 1 boinc boinc   1560580 Oct 14 03:32 agis_ddmendpoints.agis.ALL.json
[2025-10-14 03:35:20] -rw-------. 1 boinc boinc    439610 Oct 14 03:33 log.46676269._084736.job.log.tgz.1
[2025-10-14 03:35:20] -rw-------. 1 boinc boinc      7771 Oct 14 03:34 heartbeat.json
[2025-10-14 03:35:20] -rw-r--r--. 1 boinc boinc      8192 Oct 14 03:34 boinc_mmap_file
[2025-10-14 03:35:20] -rw-r--r--. 1 boinc boinc        28 Oct 14 03:34 wrapper_checkpoint.txt
[2025-10-14 03:35:20] -rw-------. 1 boinc boinc        95 Oct 14 03:35 pilot_heartbeat.json
[2025-10-14 03:35:20] -rw-------. 1 boinc boinc      5071 Oct 14 03:35 pilotlog.txt
[2025-10-14 03:35:20] -rw-------. 1 boinc boinc   1757476 Oct 14 03:35 log.46676269._084736.job.log.1
[2025-10-14 03:35:20] -rw-------. 1 boinc boinc       357 Oct 14 03:35 output.list
[2025-10-14 03:35:20] -rw-r--r--. 1 boinc boinc       620 Oct 14 03:35 runtime_log
[2025-10-14 03:35:20] -rw-------. 1 boinc boinc   2211840 Oct 14 03:35 result.tar.gz
[2025-10-14 03:35:20] -rw-r--r--. 1 boinc boinc      8717 Oct 14 03:35 runtime_log.err
[2025-10-14 03:35:20] -rw-------. 1 boinc boinc       657 Oct 14 03:35 GB6KDmRzES8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm4skNDmh8EsYn.diag
[2025-10-14 03:35:20] -rw-r--r--. 1 boinc boinc     20763 Oct 14 03:35 stderr.txt
[2025-10-14 03:35:20] HITS file was successfully produced:
[2025-10-14 03:35:20] -rw-------. 1 boinc boinc 194485666 Oct 14 03:31 shared/HITS.pool.root.1
[2025-10-14 03:35:20]  *** Contents of shared directory: ***
[2025-10-14 03:35:20] total 408532
[2025-10-14 03:35:20] -rw-r--r--. 2 boinc boinc 221045243 Oct 13 23:53 ATLAS.root_0
[2025-10-14 03:35:20] -rw-r--r--. 2 boinc boinc     15120 Oct 13 23:53 start_atlas.sh
[2025-10-14 03:35:20] -rw-r--r--. 2 boinc boinc    569680 Oct 13 23:53 input.tar.gz
[2025-10-14 03:35:20] -rw-------. 1 boinc boinc 194485666 Oct 14 03:31 HITS.pool.root.1
[2025-10-14 03:35:20] -rw-------. 1 boinc boinc   2211840 Oct 14 03:35 result.tar.gz
03:35:22 (28427): run_atlas exited; CPU time 48068.030463
03:35:22 (28427): called boinc_finish(0)

</stderr_txt>
]]>

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