Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:45:54 (2906131): wrapper (7.7.26015): starting
10:45:54 (2906131): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 10:45:54] Arguments: --nthreads 3
[2025-10-13 10:45:54] Threads: 3
[2025-10-13 10:45:54] Checking for CVMFS
[2025-10-13 10:45:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 10:45:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 10:45:54] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 10:45:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 10:45:54] 2.9.2.0 1212649 5629 83544 151654 1 57 3881788 36864001 0 130560 0 4469823 99.991 190760 841 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 10:45:54] CVMFS is ok
[2025-10-13 10:45:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 10:45:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 10:45:54] Further information can be found at the LHC@home message board.
[2025-10-13 10:45:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 10:45:54] Checking for apptainer binary...
[2025-10-13 10:45:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 10:45:54] Running /usr/bin/apptainer --version
[2025-10-13 10:45:54] apptainer version 1.4.1-1.1
[2025-10-13 10:45:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 10:45:54] thA325a
[2025-10-13 10:45:54] apptainer works
[2025-10-13 10:45:54] Set ATHENA_PROC_NUMBER=3
[2025-10-13 10:45:54] Set ATHENA_CORE_NUMBER=3
[2025-10-13 10:45:54] Starting ATLAS job with PandaID=6840223574
[2025-10-13 10:45:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 12:09:13]  *** The last 200 lines of the pilot log: ***
[2025-10-13 12:09:13] 2025-10-13 10:08:33,604 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 12:09:13] 2025-10-13 10:08:33,605 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 12:09:13] 2025-10-13 10:08:33,605 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 12:09:13] 2025-10-13 10:08:33,605 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 12:09:13] 2025-10-13 10:08:33,605 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 12:09:13] 2025-10-13 10:08:33,605 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 12:09:13] 2025-10-13 10:08:33,605 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 12:09:13] 2025-10-13 10:08:33,605 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 12:09:13] 2025-10-13 10:08:33,605 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 12:09:13] 2025-10-13 10:08:33,605 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 12:09:13] 2025-10-13 10:08:33,605 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 12:09:13] 2025-10-13 10:08:33,605 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 12:09:13] 2025-10-13 10:08:33,605 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 12:09:13] 2025-10-13 10:08:33,605 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 12:09:13] 2025-10-13 10:08:33,605 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 12:09:13] 2025-10-13 10:08:33,605 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 12:09:13] 2025-10-13 10:08:33,605 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 12:09:13] 2025-10-13 10:08:33,605 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 12:09:13] 2025-10-13 10:08:33,605 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 12:09:13] 2025-10-13 10:08:33,605 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 12:09:13] 2025-10-13 10:08:33,605 | INFO     | job 6840223574 has completed (purged errors)
[2025-10-13 12:09:13] 2025-10-13 10:08:33,605 | INFO     | overall cleanup function is called
[2025-10-13 12:09:13] 2025-10-13 10:08:34,611 | INFO     | --- collectZombieJob: --- 10, [2916277]
[2025-10-13 12:09:13] 2025-10-13 10:08:34,611 | INFO     | zombie collector waiting for pid 2916277
[2025-10-13 12:09:13] 2025-10-13 10:08:34,611 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 12:09:13] 2025-10-13 10:08:34,611 | INFO     | collected zombie processes
[2025-10-13 12:09:13] 2025-10-13 10:08:34,611 | INFO     | will attempt to kill all subprocesses of pid=2916277
[2025-10-13 12:09:13] 2025-10-13 10:08:34,655 | INFO     | process IDs to be killed: [2916277] (in reverse order)
[2025-10-13 12:09:13] 2025-10-13 10:08:34,678 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 12:09:13] 2025-10-13 10:08:34,678 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 12:09:13] 2025-10-13 10:08:34,679 | INFO     | did not find any defunct processes belonging to 2916277
[2025-10-13 12:09:13] 2025-10-13 10:08:34,680 | INFO     | did not find any defunct processes belonging to 2916277
[2025-10-13 12:09:13] 2025-10-13 10:08:34,680 | INFO     | ready for new job
[2025-10-13 12:09:13] 2025-10-13 10:08:34,680 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 12:09:13] 2025-10-13 10:08:34,681 | INFO     | ***************************************
[2025-10-13 12:09:13] 2025-10-13 10:08:34,681 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 12:09:13] 2025-10-13 10:08:34,681 | INFO     | ***************************************
[2025-10-13 12:09:13] 2025-10-13 10:08:34,681 | INFO     | 
[2025-10-13 12:09:13] 2025-10-13 10:08:34,682 | INFO     | architecture information:
[2025-10-13 12:09:13] 2025-10-13 10:08:34,682 | INFO     | executing command: cat /etc/os-release
[2025-10-13 12:09:13] 2025-10-13 10:08:34,690 | INFO     | cat /etc/os-release:
[2025-10-13 12:09:13] NAME="CentOS Linux"
[2025-10-13 12:09:13] VERSION="7 (Core)"
[2025-10-13 12:09:13] ID="centos"
[2025-10-13 12:09:13] ID_LIKE="rhel fedora"
[2025-10-13 12:09:13] VERSION_ID="7"
[2025-10-13 12:09:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 12:09:13] ANSI_COLOR="0;31"
[2025-10-13 12:09:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 12:09:13] HOME_URL="https://www.centos.org/"
[2025-10-13 12:09:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 12:09:13] 
[2025-10-13 12:09:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 12:09:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 12:09:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 12:09:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 12:09:13] 
[2025-10-13 12:09:13] 2025-10-13 10:08:34,690 | INFO     | ***************************************
[2025-10-13 12:09:13] 2025-10-13 10:08:35,192 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 12:09:13] 2025-10-13 10:08:35,206 | INFO     | sufficient remaining disk space (255601934336 B)
[2025-10-13 12:09:13] 2025-10-13 10:08:35,206 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 12:09:13] 2025-10-13 10:08:35,206 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 12:09:13] 2025-10-13 10:08:35,206 | INFO     | update_server=False
[2025-10-13 12:09:13] 2025-10-13 10:08:35,206 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 12:09:13] 2025-10-13 10:08:35,206 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 12:09:13] 2025-10-13 10:08:35,206 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 12:09:13] 2025-10-13 10:08:35,206 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 12:09:13] 2025-10-13 10:08:35,207 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:09:13] 2025-10-13 10:08:35,207 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:09:13] 2025-10-13 10:08:35,207 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 12:09:13] 2025-10-13 10:08:35,207 | INFO     | aborting loop
[2025-10-13 12:09:13] 2025-10-13 10:08:35,207 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 12:09:13] 2025-10-13 10:08:35,519 | INFO     | all data control threads have been joined
[2025-10-13 12:09:13] 2025-10-13 10:08:36,212 | INFO     | [job] retrieve thread has finished
[2025-10-13 12:09:13] 2025-10-13 10:08:36,212 | INFO     | [job] queue monitor thread has finished
[2025-10-13 12:09:13] 2025-10-13 10:08:36,212 | INFO     | [job] job monitor thread has finished
[2025-10-13 12:09:13] 2025-10-13 10:08:36,404 | INFO     | [data] copytool_in thread has finished
[2025-10-13 12:09:13] 2025-10-13 10:08:36,496 | INFO     | [payload] validate_post thread has finished
[2025-10-13 12:09:13] 2025-10-13 10:08:36,524 | INFO     | all payload control threads have been joined
[2025-10-13 12:09:13] 2025-10-13 10:08:36,524 | INFO     | [data] control thread has finished
[2025-10-13 12:09:13] 2025-10-13 10:08:36,614 | INFO     | all job control threads have been joined
[2025-10-13 12:09:13] 2025-10-13 10:08:36,953 | INFO     | [job] validate thread has finished
[2025-10-13 12:09:13] 2025-10-13 10:08:36,990 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 12:09:13] 2025-10-13 10:08:37,213 | INFO     | [data] copytool_out thread has finished
[2025-10-13 12:09:13] 2025-10-13 10:08:37,365 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 12:09:13] 2025-10-13 10:08:37,388 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 12:09:13] 2025-10-13 10:08:37,389 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 12:09:13] 2025-10-13 10:08:37,530 | INFO     | [payload] control thread has finished
[2025-10-13 12:09:13] 2025-10-13 10:08:37,580 | INFO     | [payload] failed_post thread has finished
[2025-10-13 12:09:13] 2025-10-13 10:08:37,620 | INFO     | [job] control thread has finished
[2025-10-13 12:09:13] 2025-10-13 10:08:37,633 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 12:09:13] 2025-10-13 10:08:41,372 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 12:09:13] 2025-10-13 10:09:07,031 | INFO     | [monitor] cgroup control has ended
[2025-10-13 12:09:13] 2025-10-13 10:09:07,960 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139800524064576)>', '<ExcThread(monitor, started 139799902021376)>']
[2025-10-13 12:09:13] 2025-10-13 10:09:08,376 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 12:09:13] 2025-10-13 10:09:08,376 | INFO     | [monitor] control thread has ended
[2025-10-13 12:09:13] 2025-10-13 10:09:12,986 | INFO     | all workflow threads have been joined
[2025-10-13 12:09:13] 2025-10-13 10:09:12,986 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 12:09:13] 2025-10-13 10:09:12,986 | INFO     | traces error code: 0
[2025-10-13 12:09:13] 2025-10-13 10:09:12,987 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 12:09:13] 2025-10-13 10:09:13,036 [wrapper] ==== pilot stdout END ====
[2025-10-13 12:09:13] 2025-10-13 10:09:13,039 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 12:09:13] 2025-10-13 10:09:13,041 [wrapper] pilotpid: 2909847
[2025-10-13 12:09:13] 2025-10-13 10:09:13,043 [wrapper] Pilot exit status: 0
[2025-10-13 12:09:13] 2025-10-13 10:09:13,051 [wrapper] pandaids: 6840223574
[2025-10-13 12:09:13] 2025-10-13 10:09:13,066 [wrapper] cleanup supervisor_pilot 2929117 2909848
[2025-10-13 12:09:13] 2025-10-13 10:09:13,069 [wrapper] Test setup, not cleaning
[2025-10-13 12:09:13] 2025-10-13 10:09:13,071 [wrapper] apfmon messages muted
[2025-10-13 12:09:13] 2025-10-13 10:09:13,073 [wrapper] ==== wrapper stdout END ====
[2025-10-13 12:09:13] 2025-10-13 10:09:13,076 [wrapper] ==== wrapper stderr END ====
[2025-10-13 12:09:13]  *** Error codes and diagnostics ***
[2025-10-13 12:09:13]     "exeErrorCode": 0,
[2025-10-13 12:09:13]     "exeErrorDiag": "",
[2025-10-13 12:09:13]     "pilotErrorCode": 0,
[2025-10-13 12:09:13]     "pilotErrorDiag": "",
[2025-10-13 12:09:13]  *** Listing of results directory ***
[2025-10-13 12:09:13] total 414156
[2025-10-13 12:09:13] -rw-r--r-- 1 boinc boinc    557409 Oct 12 17:00 pilot3.tar.gz
[2025-10-13 12:09:13] -rw-r--r-- 1 boinc boinc      5112 Oct 12 17:06 queuedata.json
[2025-10-13 12:09:13] -rwx------ 1 boinc boinc     36292 Oct 12 17:07 runpilot2-wrapper.sh
[2025-10-13 12:09:13] -rw-r--r-- 1 boinc boinc       100 Oct 13 10:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 12:09:13] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 10:45 run_atlas
[2025-10-13 12:09:13] -rw-r--r-- 1 boinc boinc       105 Oct 13 10:45 job.xml
[2025-10-13 12:09:13] -rw-r--r-- 2 boinc boinc 222811326 Oct 13 10:45 EVNT.46676267._004549.pool.root.1
[2025-10-13 12:09:13] -rw-r--r-- 2 boinc boinc    569683 Oct 13 10:45 input.tar.gz
[2025-10-13 12:09:13] -rw-r--r-- 2 boinc boinc     15120 Oct 13 10:45 start_atlas.sh
[2025-10-13 12:09:13] drwxrwx--x 2 boinc boinc      4096 Oct 13 10:45 shared
[2025-10-13 12:09:13] -rw-r--r-- 1 boinc boinc         0 Oct 13 10:45 boinc_setup_complete
[2025-10-13 12:09:13] -rw-r--r-- 1 boinc boinc      6439 Oct 13 10:45 init_data.xml
[2025-10-13 12:09:13] -rw-r--r-- 1 boinc boinc         0 Oct 13 10:45 boinc_lockfile
[2025-10-13 12:09:13] -rw-r--r-- 1 boinc boinc      2550 Oct 13 10:45 pandaJob.out
[2025-10-13 12:09:13] -rw------- 1 boinc boinc    972857 Oct 13 10:45 agis_schedconf.cvmfs.json
[2025-10-13 12:09:13] -rw------- 1 boinc boinc   1560580 Oct 13 10:45 agis_ddmendpoints.agis.ALL.json
[2025-10-13 12:09:13] drwx------ 5 boinc boinc      4096 Oct 13 10:46 pilot3
[2025-10-13 12:09:13] -rw-r--r-- 1 boinc boinc       529 Oct 13 12:08 boinc_task_state.xml
[2025-10-13 12:09:13] -rw------- 1 boinc boinc 195401336 Oct 13 12:08 HITS.46676269._081683.pool.root.1
[2025-10-13 12:09:13] -rw------- 1 boinc boinc      1021 Oct 13 12:08 memory_monitor_summary.json
[2025-10-13 12:09:13] -rw------- 1 boinc boinc        95 Oct 13 12:08 pilot_heartbeat.json
[2025-10-13 12:09:13] -rw------- 1 boinc boinc    262756 Oct 13 12:08 log.46676269._081683.job.log.tgz.1
[2025-10-13 12:09:13] -rw------- 1 boinc boinc      7767 Oct 13 12:08 heartbeat.json
[2025-10-13 12:09:13] -rw-r--r-- 1 boinc boinc        27 Oct 13 12:08 wrapper_checkpoint.txt
[2025-10-13 12:09:13] -rw-r--r-- 1 boinc boinc      8192 Oct 13 12:08 boinc_mmap_file
[2025-10-13 12:09:13] -rw------- 1 boinc boinc      4556 Oct 13 12:09 pilotlog.txt
[2025-10-13 12:09:13] -rw------- 1 boinc boinc    727173 Oct 13 12:09 log.46676269._081683.job.log.1
[2025-10-13 12:09:13] -rw------- 1 boinc boinc       357 Oct 13 12:09 output.list
[2025-10-13 12:09:13] -rw-r--r-- 1 boinc boinc       620 Oct 13 12:09 runtime_log
[2025-10-13 12:09:13] -rw------- 1 boinc boinc   1013760 Oct 13 12:09 result.tar.gz
[2025-10-13 12:09:13] -rw-r--r-- 1 boinc boinc      8782 Oct 13 12:09 runtime_log.err
[2025-10-13 12:09:13] -rw------- 1 boinc boinc       659 Oct 13 12:09 DdfMDmZqCS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmGDUMDmJyUzLm.diag
[2025-10-13 12:09:13] -rw-r--r-- 1 boinc boinc     12752 Oct 13 12:09 stderr.txt
[2025-10-13 12:09:13] HITS file was successfully produced:
[2025-10-13 12:09:13] -rw------- 1 boinc boinc 195401336 Oct 13 12:08 shared/HITS.pool.root.1
[2025-10-13 12:09:13]  *** Contents of shared directory: ***
[2025-10-13 12:09:13] total 409992
[2025-10-13 12:09:13] -rw-r--r-- 2 boinc boinc 222811326 Oct 13 10:45 ATLAS.root_0
[2025-10-13 12:09:13] -rw-r--r-- 2 boinc boinc    569683 Oct 13 10:45 input.tar.gz
[2025-10-13 12:09:13] -rw-r--r-- 2 boinc boinc     15120 Oct 13 10:45 start_atlas.sh
[2025-10-13 12:09:13] -rw------- 1 boinc boinc 195401336 Oct 13 12:08 HITS.pool.root.1
[2025-10-13 12:09:13] -rw------- 1 boinc boinc   1013760 Oct 13 12:09 result.tar.gz
12:09:15 (2906131): run_atlas exited; CPU time 14077.314381
12:09:15 (2906131): called boinc_finish(0)

</stderr_txt>
]]>

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