Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
22:32:17 (24021): wrapper (7.7.26015): starting
22:32:17 (24021): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 22:32:17] Arguments: --nthreads 8
[2025-10-12 22:32:17] Threads: 8
[2025-10-12 22:32:17] Checking for CVMFS
[2025-10-12 22:32:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 22:32:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 22:32:17] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 22:32:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 22:32:18] 2.11.0.0 6386 1168 58920 151636 1 188 1885433 4096000 1790 130560 2 885465 99.258 709853 1012 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-12 22:32:18] CVMFS is ok
[2025-10-12 22:32:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 22:32:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 22:32:18] Further information can be found at the LHC@home message board.
[2025-10-12 22:32:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 22:32:18] Checking for apptainer binary...
[2025-10-12 22:32:18] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-12 22:32:18] apptainer is not installed, using version from CVMFS
[2025-10-12 22:32:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 22:32:19] WARNING: Environment variable TMPDIR already has value [/tmp/job_10528232/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node201
[2025-10-12 22:32:19] apptainer works
[2025-10-12 22:32:19] Set ATHENA_PROC_NUMBER=8
[2025-10-12 22:32:19] Set ATHENA_CORE_NUMBER=8
[2025-10-12 22:32:19] Starting ATLAS job with PandaID=6840223835
[2025-10-12 22:32:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10528232/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:18:42]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:18:42] 2025-10-12 21:18:04,426 | INFO     | stage-out finished correctly
[2025-10-12 23:18:42] 2025-10-12 21:18:05,383 | INFO     | time since job start (2742s) is within the limit (172800.0s)
[2025-10-12 23:18:42] 2025-10-12 21:18:06,325 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 23:18:42] 2025-10-12 21:18:06,588 | INFO     | PID=28630 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 23:18:42] 2025-10-12 21:18:06,588 | INFO     | .. there are 3 such processes running
[2025-10-12 23:18:42] 2025-10-12 21:18:06,604 | WARNING  | process 4495 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 23:18:42] 2025-10-12 21:18:06,604 | INFO     | using path: /tmp/job_10528232/atlas/pilot/slots/0/PanDA_Pilot-6840223835/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:18:42] 2025-10-12 21:18:06,604 | INFO     | using path: /tmp/job_10528232/atlas/pilot/slots/0/PanDA_Pilot-6840223835/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:18:42] 2025-10-12 21:18:06,605 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-12 23:18:42] 2025-10-12 21:18:06,605 | WARNING  | maxPSS not found in memory monitor output
[2025-10-12 23:18:42] 2025-10-12 21:18:06,605 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2859509 B
[2025-10-12 23:18:42] 2025-10-12 21:18:06,605 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15568 B
[2025-10-12 23:18:42] 2025-10-12 21:18:06,605 | INFO     | executing command: df -mP /tmp/job_10528232/atlas/pilot/slots/0
[2025-10-12 23:18:42] 2025-10-12 21:18:06,612 | INFO     | sufficient remaining disk space (226896117760 B)
[2025-10-12 23:18:42] 2025-10-12 21:18:06,612 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-12 23:18:42] 2025-10-12 21:18:06,612 | INFO     | size of work directory /tmp/job_10528232/atlas/pilot/slots/0/PanDA_Pilot-6840223835: 3150267 B (within 2537553920 B limit)
[2025-10-12 23:18:42] 2025-10-12 21:18:06,612 | INFO     | pfn file=/tmp/job_10528232/atlas/pilot/slots/0/PanDA_Pilot-6840223835/HITS.46676269._081939.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-12 23:18:42] 2025-10-12 21:18:06,612 | INFO     | total size of present files: 0 B (workdir size: 3150267 B)
[2025-10-12 23:18:42] 2025-10-12 21:18:06,612 | INFO     | output file size check: skipping output file /tmp/job_10528232/atlas/pilot/slots/0/PanDA_Pilot-6840223835/HITS.46676269._081939.pool.root.1 since it does not exist
[2025-10-12 23:18:42] 2025-10-12 21:18:06,711 | INFO     | number of running child processes to parent process 4495: 1
[2025-10-12 23:18:42] 2025-10-12 21:18:06,711 | INFO     | maximum number of monitored processes: 6
[2025-10-12 23:18:42] 2025-10-12 21:18:07,588 | INFO     | time since job start (2744s) is within the limit (172800.0s)
[2025-10-12 23:18:42] 2025-10-12 21:18:08,423 | INFO     | job 6840223835 has state=finished
[2025-10-12 23:18:42] 2025-10-12 21:18:08,423 | INFO     | preparing for final server update for job 6840223835 in state='finished'
[2025-10-12 23:18:42] 2025-10-12 21:18:08,989 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-12 23:18:42] 2025-10-12 21:18:08,990 | INFO     | this job has now completed (state=finished)
[2025-10-12 23:18:42] 2025-10-12 21:18:08,990 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 23:18:42] 2025-10-12 21:18:08,990 | INFO     | log transfer has been attempted: DONE
[2025-10-12 23:18:42] 2025-10-12 21:18:08,990 | INFO     | job 6840223835 has finished - writing final server update
[2025-10-12 23:18:42] 2025-10-12 21:18:08,990 | INFO     | total number of processed events: 400 (read)
[2025-10-12 23:18:42] 2025-10-12 21:18:08,990 | INFO     | executing command: lscpu
[2025-10-12 23:18:42] 2025-10-12 21:18:09,020 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 23:18:42] 2025-10-12 21:18:09,213 | INFO     | monitor loop #205: job 0:6840223835 is in state 'finished'
[2025-10-12 23:18:42] 2025-10-12 21:18:09,214 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:18:42] 2025-10-12 21:18:09,594 | INFO     | time since job start (2746s) is within the limit (172800.0s)
[2025-10-12 23:18:42] 2025-10-12 21:18:10,673 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 23:18:42] 2025-10-12 21:18:10,677 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2750.1272812499997
[2025-10-12 23:18:42] 2025-10-12 21:18:10,682 | INFO     | using path: /tmp/job_10528232/atlas/pilot/slots/0/PanDA_Pilot-6840223835/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:18:42] 2025-10-12 21:18:10,683 | INFO     | extracted standard info from prmon json
[2025-10-12 23:18:42] 2025-10-12 21:18:10,683 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 23:18:42] 2025-10-12 21:18:10,683 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 23:18:42] 2025-10-12 21:18:10,683 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 23:18:42] 2025-10-12 21:18:10,683 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 23:18:42] 2025-10-12 21:18:10,684 | INFO     | fitting pss+swap vs Time
[2025-10-12 23:18:42] 2025-10-12 21:18:10,684 | INFO     | sum of square deviations: 17003109.5
[2025-10-12 23:18:42] 2025-10-12 21:18:10,684 | INFO     | sum of deviations: -183770582.5
[2025-10-12 23:18:42] 2025-10-12 21:18:10,684 | INFO     | mean x: 1760302593.5
[2025-10-12 23:18:42] 2025-10-12 21:18:10,684 | INFO     | mean y: 2630165.763157895
[2025-10-12 23:18:42] 2025-10-12 21:18:10,684 | INFO     | -- intersect: 19028081538.863808
[2025-10-12 23:18:42] 2025-10-12 21:18:10,684 | INFO     | intersect: 19028081538.863808
[2025-10-12 23:18:42] 2025-10-12 21:18:10,684 | INFO     | chi2: 0.004470111229956667
[2025-10-12 23:18:42] 2025-10-12 21:18:10,684 | INFO     | -- intersect: 19028081538.863808
[2025-10-12 23:18:42] 2025-10-12 21:18:10,684 | INFO     | current memory leak: -10.81 B/s (using 38 data points, chi2=0.00)
[2025-10-12 23:18:42] 2025-10-12 21:18:10,684 | INFO     | could have reported an average CPU frequency of 2624 MHz (5 samples)
[2025-10-12 23:18:42] 2025-10-12 21:18:10,684 | INFO     | ..............................
[2025-10-12 23:18:42] 2025-10-12 21:18:10,685 | INFO     | . Timing measurements:
[2025-10-12 23:18:42] 2025-10-12 21:18:10,685 | INFO     | . get job = 0 s
[2025-10-12 23:18:42] 2025-10-12 21:18:10,685 | INFO     | . initial setup = 1 s
[2025-10-12 23:18:42] 2025-10-12 21:18:10,685 | INFO     | . payload setup = 2 s
[2025-10-12 23:18:42] 2025-10-12 21:18:10,685 | INFO     | . stage-in = 0 s
[2025-10-12 23:18:42] 2025-10-12 21:18:10,685 | INFO     | . payload execution = 2722 s
[2025-10-12 23:18:42] 2025-10-12 21:18:10,685 | INFO     | . stage-out = 0 s
[2025-10-12 23:18:42] 2025-10-12 21:18:10,685 | INFO     | . log creation = 0 s
[2025-10-12 23:18:42] 2025-10-12 21:18:10,685 | INFO     | ..............................
[2025-10-12 23:18:42] 2025-10-12 21:18:10,735 | INFO     | 
[2025-10-12 23:18:42] 2025-10-12 21:18:10,735 | INFO     | job summary report
[2025-10-12 23:18:42] 2025-10-12 21:18:10,735 | INFO     | --------------------------------------------------
[2025-10-12 23:18:42] 2025-10-12 21:18:10,735 | INFO     | PanDA job id: 6840223835
[2025-10-12 23:18:42] 2025-10-12 21:18:10,735 | INFO     | task id: 46676269
[2025-10-12 23:18:42] 2025-10-12 21:18:10,735 | INFO     | errors: (none)
[2025-10-12 23:18:42] 2025-10-12 21:18:10,735 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 23:18:42] 2025-10-12 21:18:10,735 | INFO     | pilot state: finished 
[2025-10-12 23:18:42] 2025-10-12 21:18:10,735 | INFO     | transexitcode: 0
[2025-10-12 23:18:42] 2025-10-12 21:18:10,735 | INFO     | exeerrorcode: 0
[2025-10-12 23:18:42] 2025-10-12 21:18:10,735 | INFO     | exeerrordiag: 
[2025-10-12 23:18:42] 2025-10-12 21:18:10,735 | INFO     | exitcode: 0
[2025-10-12 23:18:42] 2025-10-12 21:18:10,735 | INFO     | exitmsg: OK
[2025-10-12 23:18:42] 2025-10-12 21:18:10,736 | INFO     | cpuconsumptiontime: 19801 s
[2025-10-12 23:18:42] 2025-10-12 21:18:10,736 | INFO     | nevents: 400
[2025-10-12 23:18:42] 2025-10-12 21:18:10,736 | INFO     | neventsw: 0
[2025-10-12 23:18:42] 2025-10-12 21:18:10,736 | INFO     | pid: 4495
[2025-10-12 23:18:42] 2025-10-12 21:18:10,736 | INFO     | pgrp: 4495
[2025-10-12 23:18:42] 2025-10-12 21:18:10,736 | INFO     | corecount: 8
[2025-10-12 23:18:42] 2025-10-12 21:18:10,736 | INFO     | event service: False
[2025-10-12 23:18:42] 2025-10-12 21:18:10,736 | INFO     | sizes: {0: 2348980, 2: 2349242, 11: 2349270, 2728: 2383705, 2730: 2383705, 2734: 2383959}
[2025-10-12 23:18:42] 2025-10-12 21:18:10,736 | INFO     | --------------------------------------------------
[2025-10-12 23:18:42] 2025-10-12 21:18:10,736 | INFO     | 
[2025-10-12 23:18:42] 2025-10-12 21:18:10,736 | INFO     | executing command: ls -lF /tmp/job_10528232/atlas/pilot/slots/0
[2025-10-12 23:18:42] 2025-10-12 21:18:10,745 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 23:18:42] 2025-10-12 21:18:10,745 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 23:18:42] 2025-10-12 21:18:10,745 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 23:18:42] 2025-10-12 21:18:10,745 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 23:18:42] 2025-10-12 21:18:10,745 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 23:18:42] 2025-10-12 21:18:10,745 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 23:18:42] 2025-10-12 21:18:10,745 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 23:18:42] 2025-10-12 21:18:10,745 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 23:18:42] 2025-10-12 21:18:10,745 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 23:18:42] 2025-10-12 21:18:10,745 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 23:18:42] 2025-10-12 21:18:10,745 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 23:18:42] 2025-10-12 21:18:10,745 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 23:18:42] 2025-10-12 21:18:10,745 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 23:18:42] 2025-10-12 21:18:10,745 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 23:18:42] 2025-10-12 21:18:10,745 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 23:18:42] 2025-10-12 21:18:10,746 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:18:42] 2025-10-12 21:18:10,746 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:18:42] 2025-10-12 21:18:10,746 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:18:42] 2025-10-12 21:18:10,746 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:18:42] 2025-10-12 21:18:10,746 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:18:42] 2025-10-12 21:18:10,746 | INFO     | job 6840223835 has completed (purged errors)
[2025-10-12 23:18:42] 2025-10-12 21:18:10,746 | INFO     | overall cleanup function is called
[2025-10-12 23:18:42] 2025-10-12 21:18:11,752 | INFO     | --- collectZombieJob: --- 10, [4495]
[2025-10-12 23:18:42] 2025-10-12 21:18:11,752 | INFO     | zombie collector waiting for pid 4495
[2025-10-12 23:18:42] 2025-10-12 21:18:11,752 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:18:42] 2025-10-12 21:18:11,752 | INFO     | collected zombie processes
[2025-10-12 23:18:42] 2025-10-12 21:18:11,752 | INFO     | will attempt to kill all subprocesses of pid=4495
[2025-10-12 23:18:42] 2025-10-12 21:18:11,850 | INFO     | process IDs to be killed: [4495] (in reverse order)
[2025-10-12 23:18:42] 2025-10-12 21:18:11,884 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:18:42] 2025-10-12 21:18:11,885 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:18:42] 2025-10-12 21:18:11,888 | INFO     | did not find any defunct processes belonging to 4495
[2025-10-12 23:18:42] 2025-10-12 21:18:11,891 | INFO     | did not find any defunct processes belonging to 4495
[2025-10-12 23:18:42] 2025-10-12 21:18:11,891 | INFO     | ready for new job
[2025-10-12 23:18:42] 2025-10-12 21:18:11,891 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:18:42] 2025-10-12 21:18:11,892 | INFO     | ***************************************
[2025-10-12 23:18:42] 2025-10-12 21:18:11,892 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:18:42] 2025-10-12 21:18:11,892 | INFO     | ***************************************
[2025-10-12 23:18:42] 2025-10-12 21:18:11,892 | INFO     | 
[2025-10-12 23:18:42] 2025-10-12 21:18:11,905 | INFO     | architecture information:
[2025-10-12 23:18:42] 2025-10-12 21:18:11,905 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:18:42] 2025-10-12 21:18:11,911 | INFO     | cat /etc/os-release:
[2025-10-12 23:18:42] NAME="CentOS Linux"
[2025-10-12 23:18:42] VERSION="7 (Core)"
[2025-10-12 23:18:42] ID="centos"
[2025-10-12 23:18:42] ID_LIKE="rhel fedora"
[2025-10-12 23:18:42] VERSION_ID="7"
[2025-10-12 23:18:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:18:42] ANSI_COLOR="0;31"
[2025-10-12 23:18:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:18:42] HOME_URL="https://www.centos.org/"
[2025-10-12 23:18:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:18:42] 
[2025-10-12 23:18:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:18:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:18:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:18:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:18:42] 
[2025-10-12 23:18:42] 2025-10-12 21:18:11,911 | INFO     | ***************************************
[2025-10-12 23:18:42] 2025-10-12 21:18:12,413 | INFO     | executing command: df -mP /tmp/job_10528232/atlas/pilot/slots/0
[2025-10-12 23:18:42] 2025-10-12 21:18:12,419 | INFO     | sufficient remaining disk space (226898214912 B)
[2025-10-12 23:18:42] 2025-10-12 21:18:12,419 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:18:42] 2025-10-12 21:18:12,419 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:18:42] 2025-10-12 21:18:12,420 | INFO     | update_server=False
[2025-10-12 23:18:42] 2025-10-12 21:18:12,420 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:18:42] 2025-10-12 21:18:12,420 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:18:42] 2025-10-12 21:18:12,420 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:18:42] 2025-10-12 21:18:12,486 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:18:42] 2025-10-12 21:18:12,721 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:18:42] 2025-10-12 21:18:12,721 | INFO     | aborting loop
[2025-10-12 23:18:42] 2025-10-12 21:18:12,899 | INFO     | all job control threads have been joined
[2025-10-12 23:18:42] 2025-10-12 21:18:13,029 | INFO     | all payload control threads have been joined
[2025-10-12 23:18:42] 2025-10-12 21:18:13,195 | INFO     | all data control threads have been joined
[2025-10-12 23:18:42] 2025-10-12 21:18:13,425 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:18:42] 2025-10-12 21:18:13,425 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:18:42] 2025-10-12 21:18:13,594 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:18:42] 2025-10-12 21:18:13,727 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:18:42] 2025-10-12 21:18:13,904 | INFO     | [job] control thread has finished
[2025-10-12 23:18:42] 2025-10-12 21:18:13,996 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:18:42] 2025-10-12 21:18:14,034 | INFO     | [payload] control thread has finished
[2025-10-12 23:18:42] 2025-10-12 21:18:14,201 | INFO     | [data] control thread has finished
[2025-10-12 23:18:42] 2025-10-12 21:18:14,404 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:18:42] 2025-10-12 21:18:14,491 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:18:42] 2025-10-12 21:18:14,547 | INFO     | [job] validate thread has finished
[2025-10-12 23:18:42] 2025-10-12 21:18:14,654 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:18:42] 2025-10-12 21:18:14,655 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:18:42] 2025-10-12 21:18:14,685 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:18:42] 2025-10-12 21:18:16,425 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:18:42] 2025-10-12 21:18:22,563 | INFO     | job.realtimelogging is not enabled
[2025-10-12 23:18:42] 2025-10-12 21:18:23,568 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:18:42] 2025-10-12 21:18:27,518 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:18:42] 2025-10-12 21:18:29,204 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456066770688)>']
[2025-10-12 23:18:42] 2025-10-12 21:18:34,229 | INFO     | all workflow threads have been joined
[2025-10-12 23:18:42] 2025-10-12 21:18:34,229 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:18:42] 2025-10-12 21:18:34,229 | INFO     | traces error code: 0
[2025-10-12 23:18:42] 2025-10-12 21:18:34,229 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:18:42] 2025-10-12 21:18:42,778 | INFO     | PID=28630 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 23:18:42] 2025-10-12 21:18:42,778 | INFO     | .. there are 2 such processes running
[2025-10-12 23:18:42] 2025-10-12 21:18:42,778 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:18:42] 2025-10-12 21:18:42,778 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:18:42] 2025-10-12 21:18:42,778 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:18:42] 2025-10-12 21:18:42,778 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:18:42] 2025-10-12 21:18:42,778 | INFO     | [monitor] control thread has ended
[2025-10-12 23:18:42] 2025-10-12 21:18:42,830 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:18:42] 2025-10-12 21:18:42,832 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:18:42] 2025-10-12 21:18:42,833 [wrapper] pilotpid: 28630
[2025-10-12 23:18:42] 2025-10-12 21:18:42,834 [wrapper] Pilot exit status: 0
[2025-10-12 23:18:42] 2025-10-12 21:18:42,838 [wrapper] pandaids: 6840223835
[2025-10-12 23:18:42] 2025-10-12 21:18:42,859 [wrapper] cleanup supervisor_pilot 28494 28631
[2025-10-12 23:18:42] 2025-10-12 21:18:42,860 [wrapper] Test setup, not cleaning
[2025-10-12 23:18:42] 2025-10-12 21:18:42,861 [wrapper] apfmon messages muted
[2025-10-12 23:18:42] 2025-10-12 21:18:42,863 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:18:42] 2025-10-12 21:18:42,864 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:18:42]  *** Error codes and diagnostics ***
[2025-10-12 23:18:42]     "exeErrorCode": 0,
[2025-10-12 23:18:42]     "exeErrorDiag": "",
[2025-10-12 23:18:42]     "pilotErrorCode": 0,
[2025-10-12 23:18:42]     "pilotErrorDiag": "",
[2025-10-12 23:18:42]  *** Listing of results directory ***
[2025-10-12 23:18:42] total 409200
[2025-10-12 23:18:42] -rw------- 1 mf493845 unix-user    557409 Oct 12 17:00 pilot3.tar.gz
[2025-10-12 23:18:42] -rw------- 1 mf493845 unix-user      5112 Oct 12 17:16 queuedata.json
[2025-10-12 23:18:42] -rwx------ 1 mf493845 unix-user     36292 Oct 12 17:16 runpilot2-wrapper.sh
[2025-10-12 23:18:42] -rw------- 1 mf493845 unix-user       100 Oct 12 21:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:18:42] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct 12 21:35 run_atlas
[2025-10-12 23:18:42] -rw------- 1 mf493845 unix-user       105 Oct 12 21:35 job.xml
[2025-10-12 23:18:42] -rw-r--r-- 2 mf493845 unix-user 222238488 Oct 12 22:32 EVNT.46676267._004560.pool.root.1
[2025-10-12 23:18:42] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 12 22:32 start_atlas.sh
[2025-10-12 23:18:42] drwxrwx--x 2 mf493845 unix-user       100 Oct 12 22:32 shared
[2025-10-12 23:18:42] -rw-r--r-- 2 mf493845 unix-user    569678 Oct 12 22:32 input.tar.gz
[2025-10-12 23:18:42] -rw------- 1 mf493845 unix-user      6392 Oct 12 22:32 init_data.xml
[2025-10-12 23:18:42] -rw------- 1 mf493845 unix-user         0 Oct 12 22:32 boinc_setup_complete
[2025-10-12 23:18:42] -rw------- 1 mf493845 unix-user      8192 Oct 12 22:32 boinc_mmap_file
[2025-10-12 23:18:42] -rw------- 1 mf493845 unix-user         0 Oct 12 22:32 boinc_lockfile
[2025-10-12 23:18:42] -rw------- 1 mf493845 unix-user      2548 Oct 12 22:32 pandaJob.out
[2025-10-12 23:18:42] -rw------- 1 mf493845 unix-user    975536 Oct 12 22:32 agis_schedconf.cvmfs.json
[2025-10-12 23:18:42] -rw------- 1 mf493845 unix-user   1560580 Oct 12 22:32 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:18:42] drwx------ 5 mf493845 unix-user       440 Oct 12 22:32 pilot3
[2025-10-12 23:18:42] -rw------- 1 mf493845 unix-user 191470625 Oct 12 23:17 HITS.46676269._081939.pool.root.1
[2025-10-12 23:18:42] -rw------- 1 mf493845 unix-user        95 Oct 12 23:18 pilot_heartbeat.json
[2025-10-12 23:18:42] -rw------- 1 mf493845 unix-user      1013 Oct 12 23:18 memory_monitor_summary.json
[2025-10-12 23:18:42] -rw------- 1 mf493845 unix-user    282532 Oct 12 23:18 log.46676269._081939.job.log.tgz.1
[2025-10-12 23:18:42] -rw------- 1 mf493845 unix-user      7762 Oct 12 23:18 heartbeat.json
[2025-10-12 23:18:42] -rw------- 1 mf493845 unix-user       820 Oct 12 23:18 pilotlog.txt
[2025-10-12 23:18:42] -rw------- 1 mf493845 unix-user    439437 Oct 12 23:18 log.46676269._081939.job.log.1
[2025-10-12 23:18:42] -rw------- 1 mf493845 unix-user       357 Oct 12 23:18 output.list
[2025-10-12 23:18:42] -rw------- 1 mf493845 unix-user       620 Oct 12 23:18 runtime_log
[2025-10-12 23:18:42] -rw------- 1 mf493845 unix-user    737280 Oct 12 23:18 result.tar.gz
[2025-10-12 23:18:42] -rw------- 1 mf493845 unix-user      9076 Oct 12 23:18 runtime_log.err
[2025-10-12 23:18:42] -rw------- 1 mf493845 unix-user       641 Oct 12 23:18 qxHNDmOzCS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmVQkNDmlJ2Bqn.diag
[2025-10-12 23:18:42] -rw------- 1 mf493845 unix-user     22959 Oct 12 23:18 stderr.txt
[2025-10-12 23:18:42] HITS file was successfully produced:
[2025-10-12 23:18:42] -rw------- 1 mf493845 unix-user 191470625 Oct 12 23:17 shared/HITS.pool.root.1
[2025-10-12 23:18:42]  *** Contents of shared directory: ***
[2025-10-12 23:18:42] total 405312
[2025-10-12 23:18:42] -rw-r--r-- 2 mf493845 unix-user 222238488 Oct 12 22:32 ATLAS.root_0
[2025-10-12 23:18:42] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 12 22:32 start_atlas.sh
[2025-10-12 23:18:42] -rw-r--r-- 2 mf493845 unix-user    569678 Oct 12 22:32 input.tar.gz
[2025-10-12 23:18:42] -rw------- 1 mf493845 unix-user 191470625 Oct 12 23:17 HITS.pool.root.1
[2025-10-12 23:18:42] -rw------- 1 mf493845 unix-user    737280 Oct 12 23:18 result.tar.gz
23:18:44 (24021): run_atlas exited; CPU time 19839.919130
23:18:44 (24021): called boinc_finish(0)

</stderr_txt>
]]>

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