Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
01:29:58 (97531): wrapper (7.7.26015): starting
01:29:58 (97531): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 01:29:58] Arguments: --nthreads 12
[2025-10-13 01:29:58] Threads: 12
[2025-10-13 01:29:58] Checking for CVMFS
[2025-10-13 01:29:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 01:30:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 01:30:01] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 01:30:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 01:30:01] 2.13.2.0 97741 0 24884 151643 3 1 2438385 4096000 0 130560 0 0 0.000 1291 1678 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-13 01:30:01] CVMFS is ok
[2025-10-13 01:30:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 01:30:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 01:30:01] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-13 01:30:01] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-13 01:30:01] Further information can be found at the LHC@home message board.
[2025-10-13 01:30:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 01:30:01] Checking for apptainer binary...
[2025-10-13 01:30:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 01:30:01] Running /usr/bin/apptainer --version
[2025-10-13 01:30:01] apptainer version 1.4.3
[2025-10-13 01:30:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 01:30:02] test-run
[2025-10-13 01:30:02] apptainer works
[2025-10-13 01:30:02] Set ATHENA_PROC_NUMBER=12
[2025-10-13 01:30:02] Set ATHENA_CORE_NUMBER=12
[2025-10-13 01:30:02] Starting ATLAS job with PandaID=6840181969
[2025-10-13 01:30:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/23 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 01:59:19]  *** The last 200 lines of the pilot log: ***
[2025-10-13 01:59:19]  mtime=0
[2025-10-13 01:59:19]  protocol_id=None
[2025-10-13 01:59:19]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 01:59:19]  replicas=None
[2025-10-13 01:59:19]  scope=mc23_13p6TeV
[2025-10-13 01:59:19]  status=None
[2025-10-13 01:59:19]  status_code=0
[2025-10-13 01:59:19]  storage_token=
[2025-10-13 01:59:19]  surl=/var/lib/boinc-client/slots/23/PanDA_Pilot-6840181969/log.46676269._080834.job.log.tgz.1
[2025-10-13 01:59:19]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/de/fd/log.46676269._080834.job.log.tgz.1
[2025-10-13 01:59:19]  workdir=None
[2025-10-13 01:59:19] ]
[2025-10-13 01:59:19] 2025-10-13 01:58:11,424 | INFO     | transferring file log.46676269._080834.job.log.tgz.1 from /var/lib/boinc-client/slots/23/PanDA_Pilot-6840181969/log.46676269._080834.job.log.tgz.1 to /var/lib/boin
[2025-10-13 01:59:19] 2025-10-13 01:58:11,424 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/23/PanDA_Pilot-6840181969/log.46676269._080834.job.log.tgz.1 /var/lib/boinc-client/slots/23/log.4667
[2025-10-13 01:59:19] 2025-10-13 01:58:11,429 | INFO     | adding to output.list: log.46676269._080834.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/de/fd/log.46676269._080834.job.log.tg
[2025-10-13 01:59:19] 2025-10-13 01:58:11,429 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 01:59:19] 2025-10-13 01:58:11,429 | INFO     | summary of transferred files:
[2025-10-13 01:59:19] 2025-10-13 01:58:11,429 | INFO     |  -- lfn=log.46676269._080834.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 01:59:19] 2025-10-13 01:58:11,429 | INFO     | stage-out finished correctly
[2025-10-13 01:59:19] 2025-10-13 01:58:12,011 | INFO     | monitor loop #133: job 0:6840181969 is in state 'finished'
[2025-10-13 01:59:19] 2025-10-13 01:58:12,011 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 01:59:19] 2025-10-13 01:58:12,864 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 01:59:19] 2025-10-13 01:58:13,167 | INFO     | time since job start (1682s) is within the limit (172800.0s)
[2025-10-13 01:59:19] 2025-10-13 01:58:14,513 | INFO     | monitor loop #134: job 0:6840181969 is in state 'finished'
[2025-10-13 01:59:19] 2025-10-13 01:58:14,514 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 01:59:19] 2025-10-13 01:58:15,172 | INFO     | time since job start (1684s) is within the limit (172800.0s)
[2025-10-13 01:59:19] 2025-10-13 01:58:15,498 | INFO     | job 6840181969 has state=finished
[2025-10-13 01:59:19] 2025-10-13 01:58:15,498 | INFO     | preparing for final server update for job 6840181969 in state='finished'
[2025-10-13 01:59:19] 2025-10-13 01:58:15,498 | INFO     | this job has now completed (state=finished)
[2025-10-13 01:59:19] 2025-10-13 01:58:15,498 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 01:59:19] 2025-10-13 01:58:15,498 | INFO     | log transfer has been attempted: DONE
[2025-10-13 01:59:19] 2025-10-13 01:58:15,498 | INFO     | job 6840181969 has finished - writing final server update
[2025-10-13 01:59:19] 2025-10-13 01:58:15,498 | INFO     | total number of processed events: 400 (read)
[2025-10-13 01:59:19] 2025-10-13 01:58:15,499 | INFO     | executing command: lscpu
[2025-10-13 01:59:19] 2025-10-13 01:58:15,513 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 01:59:19] 2025-10-13 01:58:16,277 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 01:59:19] 2025-10-13 01:58:16,277 | INFO     | found 32 cores (32 cores per socket, 1 socket) , CPU MHz: 4299.979999999998
[2025-10-13 01:59:19] 2025-10-13 01:58:16,278 | INFO     | using path: /var/lib/boinc-client/slots/23/PanDA_Pilot-6840181969/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 01:59:19] 2025-10-13 01:58:16,278 | INFO     | extracted standard info from prmon json
[2025-10-13 01:59:19] 2025-10-13 01:58:16,278 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 01:59:19] 2025-10-13 01:58:16,278 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 01:59:19] 2025-10-13 01:58:16,278 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 01:59:19] 2025-10-13 01:58:16,278 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 01:59:19] 2025-10-13 01:58:16,279 | INFO     | fitting pss+swap vs Time
[2025-10-13 01:59:19] 2025-10-13 01:58:16,279 | INFO     | sum of square deviations: 2865170.0
[2025-10-13 01:59:19] 2025-10-13 01:58:16,279 | INFO     | sum of deviations: 457573749.00000006
[2025-10-13 01:59:19] 2025-10-13 01:58:16,279 | INFO     | mean x: 1760319941.0
[2025-10-13 01:59:19] 2025-10-13 01:58:16,279 | INFO     | mean y: 2858695.904761905
[2025-10-13 01:59:19] 2025-10-13 01:58:16,279 | INFO     | -- intersect: -281123983635.55505
[2025-10-13 01:59:19] 2025-10-13 01:58:16,279 | INFO     | intersect: -281123983635.55505
[2025-10-13 01:59:19] 2025-10-13 01:58:16,279 | INFO     | chi2: 0.028310079975381704
[2025-10-13 01:59:19] 2025-10-13 01:58:16,279 | INFO     | -- intersect: -281123983635.55505
[2025-10-13 01:59:19] 2025-10-13 01:58:16,279 | INFO     | current memory leak: 159.70 B/s (using 21 data points, chi2=0.03)
[2025-10-13 01:59:19] 2025-10-13 01:58:16,279 | INFO     | could have reported an average CPU frequency of 4299 MHz (4 samples)
[2025-10-13 01:59:19] 2025-10-13 01:58:16,279 | INFO     | ..............................
[2025-10-13 01:59:19] 2025-10-13 01:58:16,279 | INFO     | . Timing measurements:
[2025-10-13 01:59:19] 2025-10-13 01:58:16,279 | INFO     | . get job = 0 s
[2025-10-13 01:59:19] 2025-10-13 01:58:16,279 | INFO     | . initial setup = 3 s
[2025-10-13 01:59:19] 2025-10-13 01:58:16,279 | INFO     | . payload setup = 1 s
[2025-10-13 01:59:19] 2025-10-13 01:58:16,279 | INFO     | . stage-in = 0 s
[2025-10-13 01:59:19] 2025-10-13 01:58:16,279 | INFO     | . payload execution = 1663 s
[2025-10-13 01:59:19] 2025-10-13 01:58:16,279 | INFO     | . stage-out = 0 s
[2025-10-13 01:59:19] 2025-10-13 01:58:16,279 | INFO     | . log creation = 0 s
[2025-10-13 01:59:19] 2025-10-13 01:58:16,279 | INFO     | ..............................
[2025-10-13 01:59:19] 2025-10-13 01:58:16,297 | INFO     | 
[2025-10-13 01:59:19] 2025-10-13 01:58:16,297 | INFO     | job summary report
[2025-10-13 01:59:19] 2025-10-13 01:58:16,297 | INFO     | --------------------------------------------------
[2025-10-13 01:59:19] 2025-10-13 01:58:16,297 | INFO     | PanDA job id: 6840181969
[2025-10-13 01:59:19] 2025-10-13 01:58:16,297 | INFO     | task id: 46676269
[2025-10-13 01:59:19] 2025-10-13 01:58:16,297 | INFO     | errors: (none)
[2025-10-13 01:59:19] 2025-10-13 01:58:16,297 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 01:59:19] 2025-10-13 01:58:16,297 | INFO     | pilot state: finished 
[2025-10-13 01:59:19] 2025-10-13 01:58:16,297 | INFO     | transexitcode: 0
[2025-10-13 01:59:19] 2025-10-13 01:58:16,297 | INFO     | exeerrorcode: 0
[2025-10-13 01:59:19] 2025-10-13 01:58:16,297 | INFO     | exeerrordiag: 
[2025-10-13 01:59:19] 2025-10-13 01:58:16,297 | INFO     | exitcode: 0
[2025-10-13 01:59:19] 2025-10-13 01:58:16,297 | INFO     | exitmsg: OK
[2025-10-13 01:59:19] 2025-10-13 01:58:16,297 | INFO     | cpuconsumptiontime: 15402 s
[2025-10-13 01:59:19] 2025-10-13 01:58:16,297 | INFO     | nevents: 400
[2025-10-13 01:59:19] 2025-10-13 01:58:16,297 | INFO     | neventsw: 0
[2025-10-13 01:59:19] 2025-10-13 01:58:16,297 | INFO     | pid: 108604
[2025-10-13 01:59:19] 2025-10-13 01:58:16,297 | INFO     | pgrp: 108604
[2025-10-13 01:59:19] 2025-10-13 01:58:16,297 | INFO     | corecount: 12
[2025-10-13 01:59:19] 2025-10-13 01:58:16,297 | INFO     | event service: False
[2025-10-13 01:59:19] 2025-10-13 01:58:16,297 | INFO     | sizes: {0: 2348865, 1: 2349127, 10: 2349155, 1668: 2374009, 1669: 2383023, 1670: 2383079, 1674: 2383401}
[2025-10-13 01:59:19] 2025-10-13 01:58:16,297 | INFO     | --------------------------------------------------
[2025-10-13 01:59:19] 2025-10-13 01:58:16,297 | INFO     | 
[2025-10-13 01:59:19] 2025-10-13 01:58:16,297 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/23
[2025-10-13 01:59:19] 2025-10-13 01:58:16,302 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 01:59:19] 2025-10-13 01:58:16,302 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 01:59:19] 2025-10-13 01:58:16,302 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 01:59:19] 2025-10-13 01:58:16,302 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 01:59:19] 2025-10-13 01:58:16,302 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 01:59:19] 2025-10-13 01:58:16,302 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 01:59:19] 2025-10-13 01:58:16,302 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 01:59:19] 2025-10-13 01:58:16,302 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 01:59:19] 2025-10-13 01:58:16,302 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 01:59:19] 2025-10-13 01:58:16,302 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 01:59:19] 2025-10-13 01:58:16,302 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 01:59:19] 2025-10-13 01:58:16,302 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 01:59:19] 2025-10-13 01:58:16,302 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 01:59:19] 2025-10-13 01:58:16,302 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 01:59:19] 2025-10-13 01:58:16,302 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 01:59:19] 2025-10-13 01:58:16,302 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 01:59:19] 2025-10-13 01:58:16,302 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 01:59:19] 2025-10-13 01:58:16,303 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 01:59:19] 2025-10-13 01:58:16,303 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 01:59:19] 2025-10-13 01:58:16,303 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 01:59:19] 2025-10-13 01:58:16,303 | INFO     | job 6840181969 has completed (purged errors)
[2025-10-13 01:59:19] 2025-10-13 01:58:16,303 | INFO     | overall cleanup function is called
[2025-10-13 01:59:19] 2025-10-13 01:58:17,309 | INFO     | --- collectZombieJob: --- 10, [108604]
[2025-10-13 01:59:19] 2025-10-13 01:58:17,309 | INFO     | zombie collector waiting for pid 108604
[2025-10-13 01:59:19] 2025-10-13 01:58:17,309 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 01:59:19] 2025-10-13 01:58:17,309 | INFO     | collected zombie processes
[2025-10-13 01:59:19] 2025-10-13 01:58:17,309 | INFO     | will attempt to kill all subprocesses of pid=108604
[2025-10-13 01:59:19] 2025-10-13 01:58:17,322 | INFO     | process IDs to be killed: [108604] (in reverse order)
[2025-10-13 01:59:19] 2025-10-13 01:58:17,331 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 01:59:19] 2025-10-13 01:58:17,331 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 01:59:19] 2025-10-13 01:58:17,332 | INFO     | did not find any defunct processes belonging to 108604
[2025-10-13 01:59:19] 2025-10-13 01:58:17,332 | INFO     | did not find any defunct processes belonging to 108604
[2025-10-13 01:59:19] 2025-10-13 01:58:17,332 | INFO     | ready for new job
[2025-10-13 01:59:19] 2025-10-13 01:58:17,332 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 01:59:19] 2025-10-13 01:58:17,333 | INFO     | ***************************************
[2025-10-13 01:59:19] 2025-10-13 01:58:17,333 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 01:59:19] 2025-10-13 01:58:17,333 | INFO     | ***************************************
[2025-10-13 01:59:19] 2025-10-13 01:58:17,333 | INFO     | 
[2025-10-13 01:59:19] 2025-10-13 01:58:17,333 | INFO     | pilot is running in a VM
[2025-10-13 01:59:19] 2025-10-13 01:58:17,333 | INFO     | architecture information:
[2025-10-13 01:59:19] 2025-10-13 01:58:17,333 | INFO     | executing command: cat /etc/os-release
[2025-10-13 01:59:19] 2025-10-13 01:58:17,336 | INFO     | cat /etc/os-release:
[2025-10-13 01:59:19] NAME="CentOS Linux"
[2025-10-13 01:59:19] VERSION="7 (Core)"
[2025-10-13 01:59:19] ID="centos"
[2025-10-13 01:59:19] ID_LIKE="rhel fedora"
[2025-10-13 01:59:19] VERSION_ID="7"
[2025-10-13 01:59:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 01:59:19] ANSI_COLOR="0;31"
[2025-10-13 01:59:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 01:59:19] HOME_URL="https://www.centos.org/"
[2025-10-13 01:59:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 01:59:19] 
[2025-10-13 01:59:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 01:59:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 01:59:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 01:59:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 01:59:19] 
[2025-10-13 01:59:19] 2025-10-13 01:58:17,336 | INFO     | ***************************************
[2025-10-13 01:59:19] 2025-10-13 01:58:17,839 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/23
[2025-10-13 01:59:19] 2025-10-13 01:58:17,845 | INFO     | sufficient remaining disk space (25421676544 B)
[2025-10-13 01:59:19] 2025-10-13 01:58:17,845 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 01:59:19] 2025-10-13 01:58:17,845 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 01:59:19] 2025-10-13 01:58:17,845 | INFO     | update_server=False
[2025-10-13 01:59:19] 2025-10-13 01:58:17,845 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 01:59:19] 2025-10-13 01:58:17,845 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 01:59:19] 2025-10-13 01:58:17,845 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:59:19] 2025-10-13 01:58:18,022 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:59:19] 2025-10-13 01:58:18,022 | INFO     | aborting loop
[2025-10-13 01:59:19] 2025-10-13 01:58:18,244 | INFO     | all data control threads have been joined
[2025-10-13 01:59:19] 2025-10-13 01:58:18,850 | INFO     | [job] retrieve thread has finished
[2025-10-13 01:59:19] 2025-10-13 01:58:18,850 | INFO     | [job] queue monitor thread has finished
[2025-10-13 01:59:19] 2025-10-13 01:58:18,867 | INFO     | all job control threads have been joined
[2025-10-13 01:59:19] 2025-10-13 01:58:18,887 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 01:59:19] 2025-10-13 01:58:18,908 | INFO     | all payload control threads have been joined
[2025-10-13 01:59:19] 2025-10-13 01:58:19,027 | INFO     | [job] job monitor thread has finished
[2025-10-13 01:59:19] 2025-10-13 01:58:19,250 | INFO     | [data] control thread has finished
[2025-10-13 01:59:19] 2025-10-13 01:58:19,252 | INFO     | [job] validate thread has finished
[2025-10-13 01:59:19] 2025-10-13 01:58:19,277 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 01:59:19] 2025-10-13 01:58:19,352 | INFO     | [payload] validate_post thread has finished
[2025-10-13 01:59:19] 2025-10-13 01:58:19,387 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 01:59:19] 2025-10-13 01:58:19,734 | INFO     | [payload] failed_post thread has finished
[2025-10-13 01:59:19] 2025-10-13 01:58:19,851 | INFO     | [data] copytool_out thread has finished
[2025-10-13 01:59:19] 2025-10-13 01:58:19,873 | INFO     | [job] control thread has finished
[2025-10-13 01:59:19] 2025-10-13 01:58:19,913 | INFO     | [payload] control thread has finished
[2025-10-13 01:59:19] 2025-10-13 01:58:20,226 | INFO     | [data] copytool_in thread has finished
[2025-10-13 01:59:19] 2025-10-13 01:58:20,341 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 01:59:19] 2025-10-13 01:58:22,892 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 01:59:19] 2025-10-13 01:58:27,989 | INFO     | job.realtimelogging is not enabled
[2025-10-13 01:59:19] 2025-10-13 01:58:28,994 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 01:59:19] 2025-10-13 01:58:48,267 | INFO     | PID=101958 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 01:59:19] 2025-10-13 01:58:48,267 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 01:59:19] 2025-10-13 01:58:48,267 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 01:59:19] 2025-10-13 01:58:48,267 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 01:59:19] 2025-10-13 01:59:13,373 | INFO     | [monitor] cgroup control has ended
[2025-10-13 01:59:19] 2025-10-13 01:59:14,213 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 127201929127744)>', '<ExcThread(monitor, started 127201261369088)>']
[2025-10-13 01:59:19] 2025-10-13 01:59:14,396 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 01:59:19] 2025-10-13 01:59:14,396 | INFO     | [monitor] control thread has ended
[2025-10-13 01:59:19] 2025-10-13 01:59:19,238 | INFO     | all workflow threads have been joined
[2025-10-13 01:59:19] 2025-10-13 01:59:19,238 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 01:59:19] 2025-10-13 01:59:19,238 | INFO     | traces error code: 0
[2025-10-13 01:59:19] 2025-10-13 01:59:19,238 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 01:59:19] 2025-10-13 01:59:19,274 [wrapper] ==== pilot stdout END ====
[2025-10-13 01:59:19] 2025-10-13 01:59:19,275 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 01:59:19] 2025-10-13 01:59:19,275 [wrapper] pilotpid: 101958
[2025-10-13 01:59:19] 2025-10-13 01:59:19,276 [wrapper] Pilot exit status: 0
[2025-10-13 01:59:19] 2025-10-13 01:59:19,280 [wrapper] pandaids: 6840181969
[2025-10-13 01:59:19] 2025-10-13 01:59:19,291 [wrapper] cleanup supervisor_pilot  132768 101959
[2025-10-13 01:59:19] 2025-10-13 01:59:19,291 [wrapper] Test setup, not cleaning
[2025-10-13 01:59:19] 2025-10-13 01:59:19,292 [wrapper] apfmon messages muted
[2025-10-13 01:59:19] 2025-10-13 01:59:19,293 [wrapper] ==== wrapper stdout END ====
[2025-10-13 01:59:19] 2025-10-13 01:59:19,294 [wrapper] ==== wrapper stderr END ====
[2025-10-13 01:59:19]  *** Error codes and diagnostics ***
[2025-10-13 01:59:19]     "exeErrorCode": 0,
[2025-10-13 01:59:19]     "exeErrorDiag": "",
[2025-10-13 01:59:19]     "pilotErrorCode": 0,
[2025-10-13 01:59:19]     "pilotErrorDiag": "",
[2025-10-13 01:59:19]  *** Listing of results directory ***
[2025-10-13 01:59:19] total 406280
[2025-10-13 01:59:19] -rwx------ 1 boinc boinc     36292 Oct 12 14:30 runpilot2-wrapper.sh
[2025-10-13 01:59:19] -rw-r--r-- 1 boinc boinc    557409 Oct 12 14:30 pilot3.tar.gz
[2025-10-13 01:59:19] -rw-r--r-- 1 boinc boinc      5112 Oct 12 14:30 queuedata.json
[2025-10-13 01:59:19] -rw-r--r-- 1 boinc boinc       100 Oct 13 01:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 01:59:19] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 01:29 run_atlas
[2025-10-13 01:59:19] -rw-r--r-- 1 boinc boinc       105 Oct 13 01:29 job.xml
[2025-10-13 01:59:19] -rw-r--r-- 2 boinc boinc     15120 Oct 13 01:29 start_atlas.sh
[2025-10-13 01:59:19] drwxrwx--x 2 boinc boinc      4096 Oct 13 01:29 shared
[2025-10-13 01:59:19] -rw-r--r-- 2 boinc boinc    569678 Oct 13 01:29 input.tar.gz
[2025-10-13 01:59:19] -rw-r--r-- 1 boinc boinc      6939 Oct 13 01:29 init_data.xml
[2025-10-13 01:59:19] -rw-r--r-- 2 boinc boinc 220185163 Oct 13 01:29 EVNT.46676267._004244.pool.root.1
[2025-10-13 01:59:19] -rw-r--r-- 1 boinc boinc         0 Oct 13 01:29 boinc_lockfile
[2025-10-13 01:59:19] -rw-r--r-- 1 boinc boinc      2550 Oct 13 01:30 pandaJob.out
[2025-10-13 01:59:19] -rw------- 1 boinc boinc    975595 Oct 13 01:30 agis_schedconf.cvmfs.json
[2025-10-13 01:59:19] -rw------- 1 boinc boinc   1560580 Oct 13 01:30 agis_ddmendpoints.agis.ALL.json
[2025-10-13 01:59:19] drwx------ 5 boinc boinc      4096 Oct 13 01:30 pilot3
[2025-10-13 01:59:19] -rw------- 1 boinc boinc 190650712 Oct 13 01:57 HITS.46676269._080834.pool.root.1
[2025-10-13 01:59:19] -rw-r--r-- 1 boinc boinc       529 Oct 13 01:57 boinc_task_state.xml
[2025-10-13 01:59:19] -rw------- 1 boinc boinc      1019 Oct 13 01:58 memory_monitor_summary.json
[2025-10-13 01:59:19] -rw------- 1 boinc boinc    356216 Oct 13 01:58 log.46676269._080834.job.log.tgz.1
[2025-10-13 01:59:19] -rw------- 1 boinc boinc        95 Oct 13 01:58 pilot_heartbeat.json
[2025-10-13 01:59:19] -rw------- 1 boinc boinc      7738 Oct 13 01:58 heartbeat.json
[2025-10-13 01:59:19] -rw-r--r-- 1 boinc boinc        27 Oct 13 01:59 wrapper_checkpoint.txt
[2025-10-13 01:59:19] -rw------- 1 boinc boinc      4889 Oct 13 01:59 pilotlog.txt
[2025-10-13 01:59:19] -rw-r--r-- 1 boinc boinc      8192 Oct 13 01:59 boinc_mmap_file
[2025-10-13 01:59:19] -rw------- 1 boinc boinc    289387 Oct 13 01:59 log.46676269._080834.job.log.1
[2025-10-13 01:59:19] -rw------- 1 boinc boinc       357 Oct 13 01:59 output.list
[2025-10-13 01:59:19] -rw-r--r-- 1 boinc boinc       620 Oct 13 01:59 runtime_log
[2025-10-13 01:59:19] -rw------- 1 boinc boinc    665600 Oct 13 01:59 result.tar.gz
[2025-10-13 01:59:19] -rw-r--r-- 1 boinc boinc      8776 Oct 13 01:59 runtime_log.err
[2025-10-13 01:59:19] -rw------- 1 boinc boinc       642 Oct 13 01:59 oQIMDmQGCS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmT6TMDmpiddpm.diag
[2025-10-13 01:59:19] -rw-r--r-- 1 boinc boinc     21839 Oct 13 01:59 stderr.txt
[2025-10-13 01:59:19] HITS file was successfully produced:
[2025-10-13 01:59:19] -rw------- 1 boinc boinc 190650712 Oct 13 01:57 shared/HITS.pool.root.1
[2025-10-13 01:59:19]  *** Contents of shared directory: ***
[2025-10-13 01:59:19] total 402444
[2025-10-13 01:59:19] -rw-r--r-- 2 boinc boinc     15120 Oct 13 01:29 start_atlas.sh
[2025-10-13 01:59:19] -rw-r--r-- 2 boinc boinc    569678 Oct 13 01:29 input.tar.gz
[2025-10-13 01:59:19] -rw-r--r-- 2 boinc boinc 220185163 Oct 13 01:29 ATLAS.root_0
[2025-10-13 01:59:19] -rw------- 1 boinc boinc 190650712 Oct 13 01:57 HITS.pool.root.1
[2025-10-13 01:59:19] -rw------- 1 boinc boinc    665600 Oct 13 01:59 result.tar.gz
01:59:21 (97531): run_atlas exited; CPU time 15405.557027
01:59:21 (97531): called boinc_finish(0)

</stderr_txt>
]]>

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