Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:43:31 (22884): wrapper (7.7.26015): starting
14:43:31 (22884): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 14:43:31] Arguments: --nthreads 8
[2025-10-12 14:43:31] Threads: 8
[2025-10-12 14:43:31] Checking for CVMFS
[2025-10-12 14:43:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 14:43:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 14:43:31] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 14:43:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 14:43:31] 2.11.2.0 12825 53235 129452 151631 2 188 17207636 18432001 1824 130560 0 47442250 99.978 2071248 20385 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 14:43:31] CVMFS is ok
[2025-10-12 14:43:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 14:43:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 14:43:31] Further information can be found at the LHC@home message board.
[2025-10-12 14:43:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 14:43:31] Checking for apptainer binary...
[2025-10-12 14:43:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 14:43:31] Running /usr/bin/apptainer --version
[2025-10-12 14:43:31] apptainer version 1.3.2-1.el7
[2025-10-12 14:43:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 14:43:32] c-206-8.aglt2.org
[2025-10-12 14:43:32] apptainer works
[2025-10-12 14:43:32] Set ATHENA_PROC_NUMBER=8
[2025-10-12 14:43:32] Set ATHENA_CORE_NUMBER=8
[2025-10-12 14:43:32] Starting ATLAS job with PandaID=6840224846
[2025-10-12 14:43:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:47:06]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:47:06] 2025-10-12 21:46:01,528 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 17:47:06] 2025-10-12 21:46:01,529 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 17:47:06] 2025-10-12 21:46:01,531 | INFO     | fitting pss+swap vs Time
[2025-10-12 17:47:06] 2025-10-12 21:46:01,531 | INFO     | sum of square deviations: 1778377530.0
[2025-10-12 17:47:06] 2025-10-12 21:46:01,532 | INFO     | sum of deviations: 23387423729.0
[2025-10-12 17:47:06] 2025-10-12 21:46:01,532 | INFO     | mean x: 1760300075.0
[2025-10-12 17:47:06] 2025-10-12 21:46:01,532 | INFO     | mean y: 2471822.2402234636
[2025-10-12 17:47:06] 2025-10-12 21:46:01,533 | INFO     | -- intersect: -23147215490.90047
[2025-10-12 17:47:06] 2025-10-12 21:46:01,533 | INFO     | intersect: -23147215490.90047
[2025-10-12 17:47:06] 2025-10-12 21:46:01,533 | INFO     | chi2: 1.3148716868686454
[2025-10-12 17:47:06] 2025-10-12 21:46:01,533 | INFO     | sum of square deviations: 1633472487.5
[2025-10-12 17:47:06] 2025-10-12 21:46:01,534 | INFO     | sum of deviations: 22605359107.5
[2025-10-12 17:47:06] 2025-10-12 21:46:01,534 | INFO     | mean x: 1760299922.5
[2025-10-12 17:47:06] 2025-10-12 21:46:01,534 | INFO     | mean y: 2470998.511494253
[2025-10-12 17:47:06] 2025-10-12 21:46:01,534 | INFO     | -- intersect: -24358032278.723484
[2025-10-12 17:47:06] 2025-10-12 21:46:01,534 | INFO     | intersect: -24358032278.723484
[2025-10-12 17:47:06] 2025-10-12 21:46:01,535 | INFO     | chi2: 1.3157145226733447
[2025-10-12 17:47:06] 2025-10-12 21:46:01,535 | INFO     | current chi2=1.3157145226733447 (change=-0.06410023222162792 %)
[2025-10-12 17:47:06] 2025-10-12 21:46:01,535 | INFO     | right removable region: 173
[2025-10-12 17:47:06] 2025-10-12 21:46:01,535 | INFO     | sum of square deviations: 1633472487.5
[2025-10-12 17:47:06] 2025-10-12 21:46:01,536 | INFO     | sum of deviations: -2861690834.499999
[2025-10-12 17:47:06] 2025-10-12 21:46:01,536 | INFO     | mean x: 1760300227.5
[2025-10-12 17:47:06] 2025-10-12 21:46:01,536 | INFO     | mean y: 2499150.4195402297
[2025-10-12 17:47:06] 2025-10-12 21:46:01,536 | INFO     | -- intersect: 3086380308.843406
[2025-10-12 17:47:06] 2025-10-12 21:46:01,536 | INFO     | intersect: 3086380308.843406
[2025-10-12 17:47:06] 2025-10-12 21:46:01,536 | INFO     | chi2: 0.0288793258591041
[2025-10-12 17:47:06] 2025-10-12 21:46:01,537 | INFO     | current chi2=0.0288793258591041 (change=97.80363923358333 %)
[2025-10-12 17:47:06] 2025-10-12 21:46:01,537 | INFO     | sum of square deviations: 1496660620.0
[2025-10-12 17:47:06] 2025-10-12 21:46:01,538 | INFO     | sum of deviations: -5142704490.999999
[2025-10-12 17:47:06] 2025-10-12 21:46:01,538 | INFO     | mean x: 1760300380.0
[2025-10-12 17:47:06] 2025-10-12 21:46:01,538 | INFO     | mean y: 2501650.1360946745
[2025-10-12 17:47:06] 2025-10-12 21:46:01,538 | INFO     | -- intersect: 6051103817.362894
[2025-10-12 17:47:06] 2025-10-12 21:46:01,538 | INFO     | intersect: 6051103817.362894
[2025-10-12 17:47:06] 2025-10-12 21:46:01,538 | INFO     | chi2: 0.009875838441078833
[2025-10-12 17:47:06] 2025-10-12 21:46:01,538 | INFO     | current chi2=0.009875838441078833 (change=65.80308526154354 %)
[2025-10-12 17:47:06] 2025-10-12 21:46:01,539 | INFO     | sum of square deviations: 1367709365.0
[2025-10-12 17:47:06] 2025-10-12 21:46:01,539 | INFO     | sum of deviations: -5084924833.500001
[2025-10-12 17:47:06] 2025-10-12 21:46:01,539 | INFO     | mean x: 1760300532.5
[2025-10-12 17:47:06] 2025-10-12 21:46:01,539 | INFO     | mean y: 2501578.5060975607
[2025-10-12 17:47:06] 2025-10-12 21:46:01,540 | INFO     | -- intersect: 6547017629.3503685
[2025-10-12 17:47:06] 2025-10-12 21:46:01,540 | INFO     | intersect: 6547017629.3503685
[2025-10-12 17:47:06] 2025-10-12 21:46:01,540 | INFO     | chi2: 0.009637616877042789
[2025-10-12 17:47:06] 2025-10-12 21:46:01,540 | INFO     | current chi2=0.009637616877042789 (change=2.4121654627839435 %)
[2025-10-12 17:47:06] 2025-10-12 21:46:01,540 | INFO     | left removable region: 30
[2025-10-12 17:47:06] 2025-10-12 21:46:01,540 | INFO     | sum of square deviations: 906703512.0
[2025-10-12 17:47:06] 2025-10-12 21:46:01,541 | INFO     | sum of deviations: -2562647393.0000014
[2025-10-12 17:47:06] 2025-10-12 21:46:01,541 | INFO     | mean x: 1760300807.0
[2025-10-12 17:47:06] 2025-10-12 21:46:01,541 | INFO     | mean y: 2497978.979020979
[2025-10-12 17:47:06] 2025-10-12 21:46:01,541 | INFO     | -- intersect: 4977696833.127001
[2025-10-12 17:47:06] 2025-10-12 21:46:01,541 | INFO     | intersect: 4977696833.127001
[2025-10-12 17:47:06] 2025-10-12 21:46:01,542 | INFO     | chi2: 0.008104114153505941
[2025-10-12 17:47:06] 2025-10-12 21:46:01,542 | INFO     | -- intersect: 4977696833.127001
[2025-10-12 17:47:06] 2025-10-12 21:46:01,542 | INFO     | current memory leak: -2.83 B/s (using 143 data points, chi2=0.01)
[2025-10-12 17:47:06] 2025-10-12 21:46:01,542 | INFO     | could have reported an average CPU frequency of 2425 MHz (9 samples)
[2025-10-12 17:47:06] 2025-10-12 21:46:01,542 | INFO     | ..............................
[2025-10-12 17:47:06] 2025-10-12 21:46:01,542 | INFO     | . Timing measurements:
[2025-10-12 17:47:06] 2025-10-12 21:46:01,542 | INFO     | . get job = 0 s
[2025-10-12 17:47:06] 2025-10-12 21:46:01,542 | INFO     | . initial setup = 2 s
[2025-10-12 17:47:06] 2025-10-12 21:46:01,543 | INFO     | . payload setup = 4 s
[2025-10-12 17:47:06] 2025-10-12 21:46:01,543 | INFO     | . stage-in = 0 s
[2025-10-12 17:47:06] 2025-10-12 21:46:01,543 | INFO     | . payload execution = 10907 s
[2025-10-12 17:47:06] 2025-10-12 21:46:01,543 | INFO     | . stage-out = 2 s
[2025-10-12 17:47:06] 2025-10-12 21:46:01,543 | INFO     | . log creation = 0 s
[2025-10-12 17:47:06] 2025-10-12 21:46:01,543 | INFO     | ..............................
[2025-10-12 17:47:06] 2025-10-12 21:46:01,646 | INFO     | 
[2025-10-12 17:47:06] 2025-10-12 21:46:01,647 | INFO     | job summary report
[2025-10-12 17:47:06] 2025-10-12 21:46:01,647 | INFO     | --------------------------------------------------
[2025-10-12 17:47:06] 2025-10-12 21:46:01,647 | INFO     | PanDA job id: 6840224846
[2025-10-12 17:47:06] 2025-10-12 21:46:01,647 | INFO     | task id: 46676269
[2025-10-12 17:47:06] 2025-10-12 21:46:01,647 | INFO     | errors: (none)
[2025-10-12 17:47:06] 2025-10-12 21:46:01,647 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 17:47:06] 2025-10-12 21:46:01,647 | INFO     | pilot state: finished 
[2025-10-12 17:47:06] 2025-10-12 21:46:01,647 | INFO     | transexitcode: 0
[2025-10-12 17:47:06] 2025-10-12 21:46:01,648 | INFO     | exeerrorcode: 0
[2025-10-12 17:47:06] 2025-10-12 21:46:01,648 | INFO     | exeerrordiag: 
[2025-10-12 17:47:06] 2025-10-12 21:46:01,648 | INFO     | exitcode: 0
[2025-10-12 17:47:06] 2025-10-12 21:46:01,648 | INFO     | exitmsg: OK
[2025-10-12 17:47:06] 2025-10-12 21:46:01,648 | INFO     | cpuconsumptiontime: 82367 s
[2025-10-12 17:47:06] 2025-10-12 21:46:01,648 | INFO     | nevents: 400
[2025-10-12 17:47:06] 2025-10-12 21:46:01,648 | INFO     | neventsw: 0
[2025-10-12 17:47:06] 2025-10-12 21:46:01,648 | INFO     | pid: 890
[2025-10-12 17:47:06] 2025-10-12 21:46:01,648 | INFO     | pgrp: 890
[2025-10-12 17:47:06] 2025-10-12 21:46:01,648 | INFO     | corecount: 8
[2025-10-12 17:47:06] 2025-10-12 21:46:01,649 | INFO     | event service: False
[2025-10-12 17:47:06] 2025-10-12 21:46:01,649 | INFO     | sizes: {0: 2348684, 1: 2348883, 4: 2349145, 11: 2349173, 10916: 2378299, 10918: 2387297, 10921: 2387481, 10925: 2387739}
[2025-10-12 17:47:06] 2025-10-12 21:46:01,649 | INFO     | --------------------------------------------------
[2025-10-12 17:47:06] 2025-10-12 21:46:01,649 | INFO     | 
[2025-10-12 17:47:06] 2025-10-12 21:46:01,649 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-12 17:47:06] 2025-10-12 21:46:01,665 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 17:47:06] 2025-10-12 21:46:01,665 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 17:47:06] 2025-10-12 21:46:01,665 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 17:47:06] 2025-10-12 21:46:01,665 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 17:47:06] 2025-10-12 21:46:01,665 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 17:47:06] 2025-10-12 21:46:01,665 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 17:47:06] 2025-10-12 21:46:01,665 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 17:47:06] 2025-10-12 21:46:01,666 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 17:47:06] 2025-10-12 21:46:01,666 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 17:47:06] 2025-10-12 21:46:01,666 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 17:47:06] 2025-10-12 21:46:01,666 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 17:47:06] 2025-10-12 21:46:01,666 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 17:47:06] 2025-10-12 21:46:01,666 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 17:47:06] 2025-10-12 21:46:01,666 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 17:47:06] 2025-10-12 21:46:01,666 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 17:47:06] 2025-10-12 21:46:01,666 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 17:47:06] 2025-10-12 21:46:01,667 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 17:47:06] 2025-10-12 21:46:01,667 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 17:47:06] 2025-10-12 21:46:01,667 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 17:47:06] 2025-10-12 21:46:01,667 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 17:47:06] 2025-10-12 21:46:01,667 | INFO     | job 6840224846 has completed (purged errors)
[2025-10-12 17:47:06] 2025-10-12 21:46:01,667 | INFO     | overall cleanup function is called
[2025-10-12 17:47:06] 2025-10-12 21:46:02,674 | INFO     | --- collectZombieJob: --- 10, [890]
[2025-10-12 17:47:06] 2025-10-12 21:46:02,675 | INFO     | zombie collector waiting for pid 890
[2025-10-12 17:47:06] 2025-10-12 21:46:02,675 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 17:47:06] 2025-10-12 21:46:02,675 | INFO     | collected zombie processes
[2025-10-12 17:47:06] 2025-10-12 21:46:02,675 | INFO     | will attempt to kill all subprocesses of pid=890
[2025-10-12 17:47:06] 2025-10-12 21:46:02,793 | INFO     | process IDs to be killed: [890] (in reverse order)
[2025-10-12 17:47:06] 2025-10-12 21:46:02,830 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 17:47:06] 2025-10-12 21:46:02,831 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 17:47:06] 2025-10-12 21:46:02,833 | INFO     | did not find any defunct processes belonging to 890
[2025-10-12 17:47:06] 2025-10-12 21:46:02,835 | INFO     | did not find any defunct processes belonging to 890
[2025-10-12 17:47:06] 2025-10-12 21:46:02,836 | INFO     | ready for new job
[2025-10-12 17:47:06] 2025-10-12 21:46:02,836 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 17:47:06] 2025-10-12 21:46:02,838 | INFO     | ***************************************
[2025-10-12 17:47:06] 2025-10-12 21:46:02,838 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:47:06] 2025-10-12 21:46:02,838 | INFO     | ***************************************
[2025-10-12 17:47:06] 2025-10-12 21:46:02,838 | INFO     | 
[2025-10-12 17:47:06] 2025-10-12 21:46:02,839 | INFO     | architecture information:
[2025-10-12 17:47:06] 2025-10-12 21:46:02,839 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:47:06] 2025-10-12 21:46:02,850 | INFO     | cat /etc/os-release:
[2025-10-12 17:47:06] NAME="CentOS Linux"
[2025-10-12 17:47:06] VERSION="7 (Core)"
[2025-10-12 17:47:06] ID="centos"
[2025-10-12 17:47:06] ID_LIKE="rhel fedora"
[2025-10-12 17:47:06] VERSION_ID="7"
[2025-10-12 17:47:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:47:06] ANSI_COLOR="0;31"
[2025-10-12 17:47:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:47:06] HOME_URL="https://www.centos.org/"
[2025-10-12 17:47:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:47:06] 
[2025-10-12 17:47:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:47:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:47:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:47:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:47:06] 
[2025-10-12 17:47:06] 2025-10-12 21:46:02,851 | INFO     | ***************************************
[2025-10-12 17:47:06] 2025-10-12 21:46:03,354 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-12 17:47:06] 2025-10-12 21:46:03,368 | INFO     | sufficient remaining disk space (27726446592 B)
[2025-10-12 17:47:06] 2025-10-12 21:46:03,368 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:47:06] 2025-10-12 21:46:03,368 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:47:06] 2025-10-12 21:46:03,368 | INFO     | update_server=False
[2025-10-12 17:47:06] 2025-10-12 21:46:03,368 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:47:06] 2025-10-12 21:46:03,369 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:47:06] 2025-10-12 21:46:03,369 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:47:06] 2025-10-12 21:46:03,585 | INFO     | all payload control threads have been joined
[2025-10-12 17:47:06] 2025-10-12 21:46:03,801 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:47:06] 2025-10-12 21:46:03,801 | INFO     | aborting loop
[2025-10-12 17:47:06] 2025-10-12 21:46:03,855 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:47:06] 2025-10-12 21:46:04,374 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:47:06] 2025-10-12 21:46:04,374 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:47:06] 2025-10-12 21:46:04,415 | INFO     | all data control threads have been joined
[2025-10-12 17:47:06] 2025-10-12 21:46:04,589 | INFO     | [payload] control thread has finished
[2025-10-12 17:47:06] 2025-10-12 21:46:04,590 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:47:06] 2025-10-12 21:46:04,615 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:47:06] 2025-10-12 21:46:04,668 | INFO     | [job] validate thread has finished
[2025-10-12 17:47:06] 2025-10-12 21:46:04,716 | INFO     | all job control threads have been joined
[2025-10-12 17:47:06] 2025-10-12 21:46:04,806 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:47:06] 2025-10-12 21:46:04,827 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:47:06] 2025-10-12 21:46:05,214 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:47:06] 2025-10-12 21:46:05,214 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:47:06] 2025-10-12 21:46:05,374 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:47:06] 2025-10-12 21:46:05,421 | INFO     | [data] control thread has finished
[2025-10-12 17:47:06] 2025-10-12 21:46:05,513 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:47:06] 2025-10-12 21:46:05,723 | INFO     | [job] control thread has finished
[2025-10-12 17:47:06] 2025-10-12 21:46:07,861 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:47:06] 2025-10-12 21:46:14,309 | INFO     | job.realtimelogging is not enabled
[2025-10-12 17:47:06] 2025-10-12 21:46:15,314 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:47:06] 2025-10-12 21:46:33,228 | INFO     | PID=26576 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 17:47:06] 2025-10-12 21:46:33,228 | INFO     | .. there are 3 such processes running
[2025-10-12 17:47:06] 2025-10-12 21:46:33,229 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:47:06] 2025-10-12 21:46:33,229 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:47:06] 2025-10-12 21:46:33,229 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:47:06] 2025-10-12 21:47:00,505 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:47:06] 2025-10-12 21:47:01,128 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140351955617600)>', '<ExcThread(monitor, started 140351494919936)>']
[2025-10-12 17:47:06] 2025-10-12 21:47:01,357 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:47:06] 2025-10-12 21:47:01,357 | INFO     | [monitor] control thread has ended
[2025-10-12 17:47:06] 2025-10-12 21:47:06,132 | INFO     | all workflow threads have been joined
[2025-10-12 17:47:06] 2025-10-12 21:47:06,133 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:47:06] 2025-10-12 21:47:06,133 | INFO     | traces error code: 0
[2025-10-12 17:47:06] 2025-10-12 21:47:06,133 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:47:06] 2025-10-12 21:47:06,231 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:47:06] 2025-10-12 21:47:06,234 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:47:06] 2025-10-12 21:47:06,236 [wrapper] pilotpid: 26576
[2025-10-12 17:47:06] 2025-10-12 21:47:06,238 [wrapper] Pilot exit status: 0
[2025-10-12 17:47:06] 2025-10-12 21:47:06,246 [wrapper] pandaids: 6840224846
[2025-10-12 17:47:06] 2025-10-12 21:47:06,275 [wrapper] cleanup supervisor_pilot 24476 26577
[2025-10-12 17:47:06] 2025-10-12 21:47:06,278 [wrapper] Test setup, not cleaning
[2025-10-12 17:47:06] 2025-10-12 21:47:06,280 [wrapper] apfmon messages muted
[2025-10-12 17:47:06] 2025-10-12 21:47:06,282 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:47:06] 2025-10-12 21:47:06,284 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:47:06]  *** Error codes and diagnostics ***
[2025-10-12 17:47:06]     "exeErrorCode": 0,
[2025-10-12 17:47:06]     "exeErrorDiag": "",
[2025-10-12 17:47:06]     "pilotErrorCode": 0,
[2025-10-12 17:47:06]     "pilotErrorDiag": "",
[2025-10-12 17:47:06]  *** Listing of results directory ***
[2025-10-12 17:47:06] total 411864
[2025-10-12 17:47:06] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 11:00 pilot3.tar.gz
[2025-10-12 17:47:06] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 11:23 queuedata.json
[2025-10-12 17:47:06] -rwx------ 1 boincer umatlas     36292 Oct 12 11:24 runpilot2-wrapper.sh
[2025-10-12 17:47:06] -rw-r--r-- 1 boincer umatlas       100 Oct 12 14:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:47:06] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 14:43 run_atlas
[2025-10-12 17:47:06] -rw-r--r-- 1 boincer umatlas       105 Oct 12 14:43 job.xml
[2025-10-12 17:47:06] -rw-r--r-- 2 boincer umatlas 222016711 Oct 12 14:43 EVNT.46676267._004568.pool.root.1
[2025-10-12 17:47:06] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 14:43 start_atlas.sh
[2025-10-12 17:47:06] drwxrwx--x 2 boincer umatlas      4096 Oct 12 14:43 shared
[2025-10-12 17:47:06] -rw-r--r-- 2 boincer umatlas    569683 Oct 12 14:43 input.tar.gz
[2025-10-12 17:47:06] -rw-r--r-- 1 boincer umatlas         0 Oct 12 14:43 boinc_lockfile
[2025-10-12 17:47:06] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 14:43 pandaJob.out
[2025-10-12 17:47:06] -rw------- 1 boincer umatlas    975528 Oct 12 14:43 agis_schedconf.cvmfs.json
[2025-10-12 17:47:06] drwx------ 5 boincer umatlas      4096 Oct 12 14:43 pilot3
[2025-10-12 17:47:06] -rw------- 1 boincer umatlas 191954559 Oct 12 17:45 HITS.46676269._082141.pool.root.1
[2025-10-12 17:47:06] -rw-r--r-- 1 boincer umatlas       531 Oct 12 17:45 boinc_task_state.xml
[2025-10-12 17:47:06] -rw------- 1 boincer umatlas      1066 Oct 12 17:45 memory_monitor_summary.json
[2025-10-12 17:47:06] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 17:45 init_data.xml
[2025-10-12 17:47:06] -rw------- 1 boincer umatlas   1560580 Oct 12 17:45 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:47:06] -rw------- 1 boincer umatlas    406005 Oct 12 17:45 log.46676269._082141.job.log.tgz.1
[2025-10-12 17:47:06] -rw------- 1 boincer umatlas      7853 Oct 12 17:46 heartbeat.json
[2025-10-12 17:47:06] -rw------- 1 boincer umatlas        95 Oct 12 17:46 pilot_heartbeat.json
[2025-10-12 17:47:06] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 17:46 boinc_mmap_file
[2025-10-12 17:47:06] -rw-r--r-- 1 boincer umatlas        28 Oct 12 17:46 wrapper_checkpoint.txt
[2025-10-12 17:47:06] -rw------- 1 boincer umatlas      4893 Oct 12 17:47 pilotlog.txt
[2025-10-12 17:47:06] -rw------- 1 boincer umatlas   1528952 Oct 12 17:47 log.46676269._082141.job.log.1
[2025-10-12 17:47:06] -rw------- 1 boincer umatlas       357 Oct 12 17:47 output.list
[2025-10-12 17:47:06] -rw-r--r-- 1 boincer umatlas       620 Oct 12 17:47 runtime_log
[2025-10-12 17:47:06] -rw------- 1 boincer umatlas   1955840 Oct 12 17:47 result.tar.gz
[2025-10-12 17:47:06] -rw------- 1 boincer umatlas       660 Oct 12 17:47 TjmLDmO7CS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3QkNDm5iKmXm.diag
[2025-10-12 17:47:06] -rw-r--r-- 1 boincer umatlas      8699 Oct 12 17:47 runtime_log.err
[2025-10-12 17:47:06] -rw-r--r-- 1 boincer umatlas     20864 Oct 12 17:47 stderr.txt
[2025-10-12 17:47:06] HITS file was successfully produced:
[2025-10-12 17:47:06] -rw------- 1 boincer umatlas 191954559 Oct 12 17:45 shared/HITS.pool.root.1
[2025-10-12 17:47:06]  *** Contents of shared directory: ***
[2025-10-12 17:47:06] total 406764
[2025-10-12 17:47:06] -rw-r--r-- 2 boincer umatlas 222016711 Oct 12 14:43 ATLAS.root_0
[2025-10-12 17:47:06] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 14:43 start_atlas.sh
[2025-10-12 17:47:06] -rw-r--r-- 2 boincer umatlas    569683 Oct 12 14:43 input.tar.gz
[2025-10-12 17:47:06] -rw------- 1 boincer umatlas 191954559 Oct 12 17:45 HITS.pool.root.1
[2025-10-12 17:47:06] -rw------- 1 boincer umatlas   1955840 Oct 12 17:47 result.tar.gz
17:47:07 (22884): run_atlas exited; CPU time 82505.446733
17:47:07 (22884): called boinc_finish(0)

</stderr_txt>
]]>

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