Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:34:43 (31612): wrapper (7.7.26015): starting
14:34:43 (31612): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 14:34:43] Arguments: --nthreads 8
[2025-10-12 14:34:43] Threads: 8
[2025-10-12 14:34:43] Checking for CVMFS
[2025-10-12 14:34:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 14:34:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 14:34:43] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 14:34:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 14:34:44] 2.11.2.0 25047 53116 112428 151631 0 188 15194580 20275200 917 130560 0 63441050 99.979 2404220 24012 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 14:34:44] CVMFS is ok
[2025-10-12 14:34:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 14:34:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 14:34:44] Further information can be found at the LHC@home message board.
[2025-10-12 14:34:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 14:34:44] Checking for apptainer binary...
[2025-10-12 14:34:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 14:34:44] Running /usr/bin/apptainer --version
[2025-10-12 14:34:44] apptainer version 1.3.2-1.el7
[2025-10-12 14:34:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 14:34:44] c-205-37.aglt2.org
[2025-10-12 14:34:44] apptainer works
[2025-10-12 14:34:44] Set ATHENA_PROC_NUMBER=8
[2025-10-12 14:34:44] Set ATHENA_CORE_NUMBER=8
[2025-10-12 14:34:44] Starting ATLAS job with PandaID=6839988414
[2025-10-12 14:34:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 15:42:21]  *** The last 200 lines of the pilot log: ***
[2025-10-12 15:42:21]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6839988414/log.46676269._078507.job.log.tgz.1
[2025-10-12 15:42:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c8/b3/log.46676269._078507.job.log.tgz.1
[2025-10-12 15:42:21]  workdir=None
[2025-10-12 15:42:21] ]
[2025-10-12 15:42:21] 2025-10-12 19:41:41,587 | INFO     | transferring file log.46676269._078507.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6839988414/log.46676269._078507.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 15:42:21] 2025-10-12 19:41:41,587 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6839988414/log.46676269._078507.job.log.tgz.1 /tmp/boinchome/slots/1/log.46676269._078507.job
[2025-10-12 15:42:21] 2025-10-12 19:41:41,607 | INFO     | adding to output.list: log.46676269._078507.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c8/b3/log.46676269._078507.job.log.tg
[2025-10-12 15:42:21] 2025-10-12 19:41:41,608 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 15:42:21] 2025-10-12 19:41:41,608 | INFO     | summary of transferred files:
[2025-10-12 15:42:21] 2025-10-12 19:41:41,608 | INFO     |  -- lfn=log.46676269._078507.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 15:42:21] 2025-10-12 19:41:41,608 | INFO     | stage-out finished correctly
[2025-10-12 15:42:21] 2025-10-12 19:41:41,657 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 15:42:21] 2025-10-12 19:41:41,761 | INFO     | monitor loop #299: job 0:6839988414 is in state 'finished'
[2025-10-12 15:42:21] 2025-10-12 19:41:41,761 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 15:42:21] 2025-10-12 19:41:42,058 | INFO     | time since job start (4006s) is within the limit (172800.0s)
[2025-10-12 15:42:21] 2025-10-12 19:41:44,063 | INFO     | time since job start (4008s) is within the limit (172800.0s)
[2025-10-12 15:42:21] 2025-10-12 19:41:44,147 | INFO     | job 6839988414 has state=finished
[2025-10-12 15:42:21] 2025-10-12 19:41:44,147 | INFO     | preparing for final server update for job 6839988414 in state='finished'
[2025-10-12 15:42:21] 2025-10-12 19:41:44,148 | INFO     | this job has now completed (state=finished)
[2025-10-12 15:42:21] 2025-10-12 19:41:44,148 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 15:42:21] 2025-10-12 19:41:44,148 | INFO     | log transfer has been attempted: DONE
[2025-10-12 15:42:21] 2025-10-12 19:41:44,148 | INFO     | job 6839988414 has finished - writing final server update
[2025-10-12 15:42:21] 2025-10-12 19:41:44,149 | INFO     | total number of processed events: 400 (read)
[2025-10-12 15:42:21] 2025-10-12 19:41:44,150 | INFO     | executing command: lscpu
[2025-10-12 15:42:21] 2025-10-12 19:41:44,182 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 15:42:21] 2025-10-12 19:41:44,264 | INFO     | monitor loop #300: job 0:6839988414 is in state 'finished'
[2025-10-12 15:42:21] 2025-10-12 19:41:44,265 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 15:42:21] 2025-10-12 19:41:46,069 | INFO     | time since job start (4010s) is within the limit (172800.0s)
[2025-10-12 15:42:21] 2025-10-12 19:41:46,768 | INFO     | monitor loop #301: job 0:6839988414 is in state 'finished'
[2025-10-12 15:42:21] 2025-10-12 19:41:46,768 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 15:42:21] 2025-10-12 19:41:47,211 | INFO     | PID=3000 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 15:42:21] 2025-10-12 19:41:47,211 | INFO     | .. there are 2 such processes running
[2025-10-12 15:42:21] 2025-10-12 19:41:48,212 | INFO     | time since job start (4012s) is within the limit (172800.0s)
[2025-10-12 15:42:21] 2025-10-12 19:41:48,212 | INFO     | 4013s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-12 15:42:21] 2025-10-12 19:41:49,271 | INFO     | monitor loop #302: job 0:6839988414 is in state 'finished'
[2025-10-12 15:42:21] 2025-10-12 19:41:49,271 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 15:42:21] 2025-10-12 19:41:49,934 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 15:42:21] 2025-10-12 19:41:49,939 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2052.96875
[2025-10-12 15:42:21] 2025-10-12 19:41:49,943 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6839988414/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 15:42:21] 2025-10-12 19:41:49,944 | INFO     | extracted standard info from prmon json
[2025-10-12 15:42:21] 2025-10-12 19:41:49,944 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 15:42:21] 2025-10-12 19:41:49,944 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 15:42:21] 2025-10-12 19:41:49,945 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 15:42:21] 2025-10-12 19:41:49,945 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 15:42:21] 2025-10-12 19:41:49,947 | INFO     | fitting pss+swap vs Time
[2025-10-12 15:42:21] 2025-10-12 19:41:49,947 | INFO     | sum of square deviations: 63666310.0
[2025-10-12 15:42:21] 2025-10-12 19:41:49,947 | INFO     | sum of deviations: -827311829.0000001
[2025-10-12 15:42:21] 2025-10-12 19:41:49,948 | INFO     | mean x: 1760296196.0
[2025-10-12 15:42:21] 2025-10-12 19:41:49,948 | INFO     | mean y: 2526401.881355932
[2025-10-12 15:42:21] 2025-10-12 19:41:49,948 | INFO     | -- intersect: 22876694317.29066
[2025-10-12 15:42:21] 2025-10-12 19:41:49,948 | INFO     | intersect: 22876694317.29066
[2025-10-12 15:42:21] 2025-10-12 19:41:49,948 | INFO     | chi2: 0.011876531137496402
[2025-10-12 15:42:21] 2025-10-12 19:41:49,948 | INFO     | -- intersect: 22876694317.29066
[2025-10-12 15:42:21] 2025-10-12 19:41:49,948 | INFO     | current memory leak: -12.99 B/s (using 59 data points, chi2=0.01)
[2025-10-12 15:42:21] 2025-10-12 19:41:49,949 | INFO     | could have reported an average CPU frequency of 2251 MHz (6 samples)
[2025-10-12 15:42:21] 2025-10-12 19:41:49,949 | INFO     | ..............................
[2025-10-12 15:42:21] 2025-10-12 19:41:49,949 | INFO     | . Timing measurements:
[2025-10-12 15:42:21] 2025-10-12 19:41:49,949 | INFO     | . get job = 0 s
[2025-10-12 15:42:21] 2025-10-12 19:41:49,949 | INFO     | . initial setup = 2 s
[2025-10-12 15:42:21] 2025-10-12 19:41:49,950 | INFO     | . payload setup = 5 s
[2025-10-12 15:42:21] 2025-10-12 19:41:49,950 | INFO     | . stage-in = 0 s
[2025-10-12 15:42:21] 2025-10-12 19:41:49,950 | INFO     | . payload execution = 3978 s
[2025-10-12 15:42:21] 2025-10-12 19:41:49,950 | INFO     | . stage-out = 0 s
[2025-10-12 15:42:21] 2025-10-12 19:41:49,950 | INFO     | . log creation = 0 s
[2025-10-12 15:42:21] 2025-10-12 19:41:49,950 | INFO     | ..............................
[2025-10-12 15:42:21] 2025-10-12 19:41:50,033 | INFO     | 
[2025-10-12 15:42:21] 2025-10-12 19:41:50,033 | INFO     | job summary report
[2025-10-12 15:42:21] 2025-10-12 19:41:50,033 | INFO     | --------------------------------------------------
[2025-10-12 15:42:21] 2025-10-12 19:41:50,033 | INFO     | PanDA job id: 6839988414
[2025-10-12 15:42:21] 2025-10-12 19:41:50,033 | INFO     | task id: 46676269
[2025-10-12 15:42:21] 2025-10-12 19:41:50,033 | INFO     | errors: (none)
[2025-10-12 15:42:21] 2025-10-12 19:41:50,034 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 15:42:21] 2025-10-12 19:41:50,034 | INFO     | pilot state: finished 
[2025-10-12 15:42:21] 2025-10-12 19:41:50,034 | INFO     | transexitcode: 0
[2025-10-12 15:42:21] 2025-10-12 19:41:50,034 | INFO     | exeerrorcode: 0
[2025-10-12 15:42:21] 2025-10-12 19:41:50,034 | INFO     | exeerrordiag: 
[2025-10-12 15:42:21] 2025-10-12 19:41:50,034 | INFO     | exitcode: 0
[2025-10-12 15:42:21] 2025-10-12 19:41:50,034 | INFO     | exitmsg: OK
[2025-10-12 15:42:21] 2025-10-12 19:41:50,034 | INFO     | cpuconsumptiontime: 29989 s
[2025-10-12 15:42:21] 2025-10-12 19:41:50,035 | INFO     | nevents: 400
[2025-10-12 15:42:21] 2025-10-12 19:41:50,035 | INFO     | neventsw: 0
[2025-10-12 15:42:21] 2025-10-12 19:41:50,035 | INFO     | pid: 10686
[2025-10-12 15:42:21] 2025-10-12 19:41:50,035 | INFO     | pgrp: 10686
[2025-10-12 15:42:21] 2025-10-12 19:41:50,035 | INFO     | corecount: 8
[2025-10-12 15:42:21] 2025-10-12 19:41:50,035 | INFO     | event service: False
[2025-10-12 15:42:21] 2025-10-12 19:41:50,035 | INFO     | sizes: {0: 2348027, 1: 2348883, 5: 2349145, 12: 2349201, 3988: 2375150, 3990: 2384332, 3998: 2384470}
[2025-10-12 15:42:21] 2025-10-12 19:41:50,035 | INFO     | --------------------------------------------------
[2025-10-12 15:42:21] 2025-10-12 19:41:50,036 | INFO     | 
[2025-10-12 15:42:21] 2025-10-12 19:41:50,036 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 15:42:21] 2025-10-12 19:41:50,058 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 15:42:21] 2025-10-12 19:41:50,058 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 15:42:21] 2025-10-12 19:41:50,058 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 15:42:21] 2025-10-12 19:41:50,059 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 15:42:21] 2025-10-12 19:41:50,059 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 15:42:21] 2025-10-12 19:41:50,059 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 15:42:21] 2025-10-12 19:41:50,059 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 15:42:21] 2025-10-12 19:41:50,059 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 15:42:21] 2025-10-12 19:41:50,059 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 15:42:21] 2025-10-12 19:41:50,059 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 15:42:21] 2025-10-12 19:41:50,059 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 15:42:21] 2025-10-12 19:41:50,060 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 15:42:21] 2025-10-12 19:41:50,060 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 15:42:21] 2025-10-12 19:41:50,060 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 15:42:21] 2025-10-12 19:41:50,060 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 15:42:21] 2025-10-12 19:41:50,060 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 15:42:21] 2025-10-12 19:41:50,060 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 15:42:21] 2025-10-12 19:41:50,060 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 15:42:21] 2025-10-12 19:41:50,060 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 15:42:21] 2025-10-12 19:41:50,060 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 15:42:21] 2025-10-12 19:41:50,061 | INFO     | job 6839988414 has completed (purged errors)
[2025-10-12 15:42:21] 2025-10-12 19:41:50,061 | INFO     | overall cleanup function is called
[2025-10-12 15:42:21] 2025-10-12 19:41:51,069 | INFO     | --- collectZombieJob: --- 10, [10686]
[2025-10-12 15:42:21] 2025-10-12 19:41:51,069 | INFO     | zombie collector waiting for pid 10686
[2025-10-12 15:42:21] 2025-10-12 19:41:51,070 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 15:42:21] 2025-10-12 19:41:51,070 | INFO     | collected zombie processes
[2025-10-12 15:42:21] 2025-10-12 19:41:51,070 | INFO     | will attempt to kill all subprocesses of pid=10686
[2025-10-12 15:42:21] 2025-10-12 19:41:51,187 | INFO     | process IDs to be killed: [10686] (in reverse order)
[2025-10-12 15:42:21] 2025-10-12 19:41:51,249 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 15:42:21] 2025-10-12 19:41:51,249 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 15:42:21] 2025-10-12 19:41:51,253 | INFO     | did not find any defunct processes belonging to 10686
[2025-10-12 15:42:21] 2025-10-12 19:41:51,257 | INFO     | did not find any defunct processes belonging to 10686
[2025-10-12 15:42:21] 2025-10-12 19:41:51,257 | INFO     | ready for new job
[2025-10-12 15:42:21] 2025-10-12 19:41:51,258 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 15:42:21] 2025-10-12 19:41:51,259 | INFO     | ***************************************
[2025-10-12 15:42:21] 2025-10-12 19:41:51,260 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 15:42:21] 2025-10-12 19:41:51,260 | INFO     | ***************************************
[2025-10-12 15:42:21] 2025-10-12 19:41:51,260 | INFO     | 
[2025-10-12 15:42:21] 2025-10-12 19:41:51,261 | INFO     | architecture information:
[2025-10-12 15:42:21] 2025-10-12 19:41:51,262 | INFO     | executing command: cat /etc/os-release
[2025-10-12 15:42:21] 2025-10-12 19:41:51,278 | INFO     | cat /etc/os-release:
[2025-10-12 15:42:21] NAME="CentOS Linux"
[2025-10-12 15:42:21] VERSION="7 (Core)"
[2025-10-12 15:42:21] ID="centos"
[2025-10-12 15:42:21] ID_LIKE="rhel fedora"
[2025-10-12 15:42:21] VERSION_ID="7"
[2025-10-12 15:42:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 15:42:21] ANSI_COLOR="0;31"
[2025-10-12 15:42:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 15:42:21] HOME_URL="https://www.centos.org/"
[2025-10-12 15:42:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 15:42:21] 
[2025-10-12 15:42:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 15:42:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 15:42:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 15:42:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 15:42:21] 
[2025-10-12 15:42:21] 2025-10-12 19:41:51,279 | INFO     | ***************************************
[2025-10-12 15:42:21] 2025-10-12 19:41:51,782 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 15:42:21] 2025-10-12 19:41:51,800 | INFO     | sufficient remaining disk space (32932626432 B)
[2025-10-12 15:42:21] 2025-10-12 19:41:51,801 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 15:42:21] 2025-10-12 19:41:51,801 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 15:42:21] 2025-10-12 19:41:51,801 | INFO     | update_server=False
[2025-10-12 15:42:21] 2025-10-12 19:41:51,801 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 15:42:21] 2025-10-12 19:41:51,802 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:42:21] 2025-10-12 19:41:51,812 | INFO     | all payload control threads have been joined
[2025-10-12 15:42:21] 2025-10-12 19:41:52,169 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 15:42:21] 2025-10-12 19:41:52,243 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 15:42:21] 2025-10-12 19:41:52,362 | INFO     | all job control threads have been joined
[2025-10-12 15:42:21] 2025-10-12 19:41:52,490 | INFO     | all data control threads have been joined
[2025-10-12 15:42:21] 2025-10-12 19:41:52,779 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:42:21] 2025-10-12 19:41:52,780 | INFO     | aborting loop
[2025-10-12 15:42:21] 2025-10-12 19:41:52,802 | INFO     | [job] retrieve thread has finished
[2025-10-12 15:42:21] 2025-10-12 19:41:52,807 | INFO     | [job] queue monitor thread has finished
[2025-10-12 15:42:21] 2025-10-12 19:41:52,817 | INFO     | [payload] control thread has finished
[2025-10-12 15:42:21] 2025-10-12 19:41:52,821 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 15:42:21] 2025-10-12 19:41:52,875 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 15:42:21] 2025-10-12 19:41:53,367 | INFO     | [job] control thread has finished
[2025-10-12 15:42:21] 2025-10-12 19:41:53,495 | INFO     | [data] control thread has finished
[2025-10-12 15:42:21] 2025-10-12 19:41:53,548 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 15:42:21] 2025-10-12 19:41:53,655 | INFO     | [payload] failed_post thread has finished
[2025-10-12 15:42:21] 2025-10-12 19:41:53,785 | INFO     | [job] job monitor thread has finished
[2025-10-12 15:42:21] 2025-10-12 19:41:53,948 | INFO     | [job] validate thread has finished
[2025-10-12 15:42:21] 2025-10-12 19:41:54,153 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 15:42:21] 2025-10-12 19:41:54,174 | INFO     | [data] copytool_out thread has finished
[2025-10-12 15:42:21] 2025-10-12 19:41:54,239 | INFO     | [data] copytool_in thread has finished
[2025-10-12 15:42:21] 2025-10-12 19:41:54,244 | INFO     | [payload] validate_post thread has finished
[2025-10-12 15:42:21] 2025-10-12 19:41:56,249 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 15:42:21] 2025-10-12 19:42:02,291 | INFO     | [monitor] cgroup control has ended
[2025-10-12 15:42:21] 2025-10-12 19:42:03,803 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139935475754816)>', '<ExcThread(monitor, started 139935017309952)>']
[2025-10-12 15:42:21] 2025-10-12 19:42:08,828 | INFO     | all workflow threads have been joined
[2025-10-12 15:42:21] 2025-10-12 19:42:08,828 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 15:42:21] 2025-10-12 19:42:08,828 | INFO     | traces error code: 0
[2025-10-12 15:42:21] 2025-10-12 19:42:08,829 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 15:42:21] 2025-10-12 19:42:21,438 | INFO     | PID=3000 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 15:42:21] 2025-10-12 19:42:21,439 | INFO     | .. there are 2 such processes running
[2025-10-12 15:42:21] 2025-10-12 19:42:21,439 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 15:42:21] 2025-10-12 19:42:21,439 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 15:42:21] 2025-10-12 19:42:21,439 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 15:42:21] 2025-10-12 19:42:21,439 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 15:42:21] 2025-10-12 19:42:21,439 | INFO     | [monitor] control thread has ended
[2025-10-12 15:42:21] 2025-10-12 19:42:21,541 [wrapper] ==== pilot stdout END ====
[2025-10-12 15:42:21] 2025-10-12 19:42:21,544 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 15:42:21] 2025-10-12 19:42:21,547 [wrapper] pilotpid: 3000
[2025-10-12 15:42:21] 2025-10-12 19:42:21,550 [wrapper] Pilot exit status: 0
[2025-10-12 15:42:21] 2025-10-12 19:42:21,562 [wrapper] pandaids: 6839988414
[2025-10-12 15:42:21] 2025-10-12 19:42:21,591 [wrapper] cleanup supervisor_pilot 27874 3001
[2025-10-12 15:42:21] 2025-10-12 19:42:21,594 [wrapper] Test setup, not cleaning
[2025-10-12 15:42:21] 2025-10-12 19:42:21,598 [wrapper] apfmon messages muted
[2025-10-12 15:42:21] 2025-10-12 19:42:21,601 [wrapper] ==== wrapper stdout END ====
[2025-10-12 15:42:21] 2025-10-12 19:42:21,604 [wrapper] ==== wrapper stderr END ====
[2025-10-12 15:42:21]  *** Error codes and diagnostics ***
[2025-10-12 15:42:21]     "exeErrorCode": 0,
[2025-10-12 15:42:21]     "exeErrorDiag": "",
[2025-10-12 15:42:21]     "pilotErrorCode": 0,
[2025-10-12 15:42:21]     "pilotErrorDiag": "",
[2025-10-12 15:42:21]  *** Listing of results directory ***
[2025-10-12 15:42:21] total 412364
[2025-10-12 15:42:21] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 08:35 pilot3.tar.gz
[2025-10-12 15:42:21] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 08:45 queuedata.json
[2025-10-12 15:42:21] -rwx------ 1 boincer umatlas     36292 Oct 12 08:46 runpilot2-wrapper.sh
[2025-10-12 15:42:21] -rw-r--r-- 1 boincer umatlas       100 Oct 12 14:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 15:42:21] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 14:34 run_atlas
[2025-10-12 15:42:21] -rw-r--r-- 1 boincer umatlas       105 Oct 12 14:34 job.xml
[2025-10-12 15:42:21] -rw-r--r-- 2 boincer umatlas 220777790 Oct 12 14:34 EVNT.46676267._003810.pool.root.1
[2025-10-12 15:42:21] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 14:34 start_atlas.sh
[2025-10-12 15:42:21] drwxrwx--x 2 boincer umatlas      4096 Oct 12 14:34 shared
[2025-10-12 15:42:21] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 14:34 input.tar.gz
[2025-10-12 15:42:21] -rw-r--r-- 1 boincer umatlas         0 Oct 12 14:34 boinc_lockfile
[2025-10-12 15:42:21] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 14:34 pandaJob.out
[2025-10-12 15:42:21] -rw------- 1 boincer umatlas    975528 Oct 12 14:34 agis_schedconf.cvmfs.json
[2025-10-12 15:42:21] -rw------- 1 boincer umatlas   1560580 Oct 12 14:34 agis_ddmendpoints.agis.ALL.json
[2025-10-12 15:42:21] drwx------ 5 boincer umatlas      4096 Oct 12 14:34 pilot3
[2025-10-12 15:42:21] -rw-r--r-- 1 boincer umatlas      6135 Oct 12 15:36 init_data.xml
[2025-10-12 15:42:21] -rw------- 1 boincer umatlas 195780268 Oct 12 15:41 HITS.46676269._078507.pool.root.1
[2025-10-12 15:42:21] -rw-r--r-- 1 boincer umatlas       529 Oct 12 15:41 boinc_task_state.xml
[2025-10-12 15:42:21] -rw------- 1 boincer umatlas      1059 Oct 12 15:41 memory_monitor_summary.json
[2025-10-12 15:42:21] -rw------- 1 boincer umatlas    303858 Oct 12 15:41 log.46676269._078507.job.log.tgz.1
[2025-10-12 15:42:21] -rw------- 1 boincer umatlas        95 Oct 12 15:41 pilot_heartbeat.json
[2025-10-12 15:42:21] -rw------- 1 boincer umatlas      7833 Oct 12 15:41 heartbeat.json
[2025-10-12 15:42:21] -rw-r--r-- 1 boincer umatlas        27 Oct 12 15:42 wrapper_checkpoint.txt
[2025-10-12 15:42:21] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 15:42 boinc_mmap_file
[2025-10-12 15:42:21] -rw------- 1 boincer umatlas       819 Oct 12 15:42 pilotlog.txt
[2025-10-12 15:42:21] -rw------- 1 boincer umatlas    601707 Oct 12 15:42 log.46676269._078507.job.log.1
[2025-10-12 15:42:21] -rw------- 1 boincer umatlas       357 Oct 12 15:42 output.list
[2025-10-12 15:42:21] -rw-r--r-- 1 boincer umatlas       620 Oct 12 15:42 runtime_log
[2025-10-12 15:42:21] -rw------- 1 boincer umatlas    921600 Oct 12 15:42 result.tar.gz
[2025-10-12 15:42:21] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 15:42 runtime_log.err
[2025-10-12 15:42:21] -rw------- 1 boincer umatlas       657 Oct 12 15:42 GJKMDm8dAS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmCrjNDmYiLATo.diag
[2025-10-12 15:42:21] -rw-r--r-- 1 boincer umatlas     22330 Oct 12 15:42 stderr.txt
[2025-10-12 15:42:21] HITS file was successfully produced:
[2025-10-12 15:42:21] -rw------- 1 boincer umatlas 195780268 Oct 12 15:41 shared/HITS.pool.root.1
[2025-10-12 15:42:21]  *** Contents of shared directory: ***
[2025-10-12 15:42:21] total 408276
[2025-10-12 15:42:21] -rw-r--r-- 2 boincer umatlas 220777790 Oct 12 14:34 ATLAS.root_0
[2025-10-12 15:42:21] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 14:34 start_atlas.sh
[2025-10-12 15:42:21] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 14:34 input.tar.gz
[2025-10-12 15:42:21] -rw------- 1 boincer umatlas 195780268 Oct 12 15:41 HITS.pool.root.1
[2025-10-12 15:42:21] -rw------- 1 boincer umatlas    921600 Oct 12 15:42 result.tar.gz
15:42:23 (31612): run_atlas exited; CPU time 29985.512255
15:42:23 (31612): called boinc_finish(0)

</stderr_txt>
]]>

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