Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:08:23 (3722707): wrapper (7.7.26015): starting
06:08:23 (3722707): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 06:08:23] Arguments: --nthreads 4
[2025-10-13 06:08:23] Threads: 4
[2025-10-13 06:08:23] Checking for CVMFS
[2025-10-13 06:08:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 06:08:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 06:08:23] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 06:08:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 06:08:23] 2.9.2.0 1861142 5141 98356 151647 1 57 23192866 36864000 0 130560 0 4713598 99.992 182856 892 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 06:08:23] CVMFS is ok
[2025-10-13 06:08:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 06:08:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 06:08:23] Further information can be found at the LHC@home message board.
[2025-10-13 06:08:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 06:08:23] Checking for apptainer binary...
[2025-10-13 06:08:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 06:08:23] Running /usr/bin/apptainer --version
[2025-10-13 06:08:23] apptainer version 1.4.1-1.1
[2025-10-13 06:08:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 06:08:23] thA319
[2025-10-13 06:08:23] apptainer works
[2025-10-13 06:08:23] Set ATHENA_PROC_NUMBER=4
[2025-10-13 06:08:23] Set ATHENA_CORE_NUMBER=4
[2025-10-13 06:08:23] Starting ATLAS job with PandaID=6840223642
[2025-10-13 06:08:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 07:16:42]  *** The last 200 lines of the pilot log: ***
[2025-10-13 07:16:42] 2025-10-13 05:15:58,006 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 07:16:42] 2025-10-13 05:15:58,006 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 07:16:42] 2025-10-13 05:15:58,006 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 07:16:42] 2025-10-13 05:15:58,006 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 07:16:42] 2025-10-13 05:15:58,006 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 07:16:42] 2025-10-13 05:15:58,006 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 07:16:42] 2025-10-13 05:15:58,006 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 07:16:42] 2025-10-13 05:15:58,006 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 07:16:42] 2025-10-13 05:15:58,006 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 07:16:42] 2025-10-13 05:15:58,006 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 07:16:42] 2025-10-13 05:15:58,006 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 07:16:42] 2025-10-13 05:15:58,006 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 07:16:42] 2025-10-13 05:15:58,006 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 07:16:42] 2025-10-13 05:15:58,006 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 07:16:42] 2025-10-13 05:15:58,006 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 07:16:42] 2025-10-13 05:15:58,006 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 07:16:42] 2025-10-13 05:15:58,006 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 07:16:42] 2025-10-13 05:15:58,006 | INFO     | job 6840223642 has completed (purged errors)
[2025-10-13 07:16:42] 2025-10-13 05:15:58,006 | INFO     | overall cleanup function is called
[2025-10-13 07:16:42] 2025-10-13 05:15:59,013 | INFO     | --- collectZombieJob: --- 10, [3733049]
[2025-10-13 07:16:42] 2025-10-13 05:15:59,013 | INFO     | zombie collector waiting for pid 3733049
[2025-10-13 07:16:42] 2025-10-13 05:15:59,013 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 07:16:42] 2025-10-13 05:15:59,013 | INFO     | collected zombie processes
[2025-10-13 07:16:42] 2025-10-13 05:15:59,013 | INFO     | will attempt to kill all subprocesses of pid=3733049
[2025-10-13 07:16:42] 2025-10-13 05:15:59,061 | INFO     | process IDs to be killed: [3733049] (in reverse order)
[2025-10-13 07:16:42] 2025-10-13 05:15:59,094 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 07:16:42] 2025-10-13 05:15:59,095 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 07:16:42] 2025-10-13 05:15:59,096 | INFO     | did not find any defunct processes belonging to 3733049
[2025-10-13 07:16:42] 2025-10-13 05:15:59,098 | INFO     | did not find any defunct processes belonging to 3733049
[2025-10-13 07:16:42] 2025-10-13 05:15:59,098 | INFO     | ready for new job
[2025-10-13 07:16:42] 2025-10-13 05:15:59,098 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 07:16:42] 2025-10-13 05:15:59,099 | INFO     | ***************************************
[2025-10-13 07:16:42] 2025-10-13 05:15:59,099 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 07:16:42] 2025-10-13 05:15:59,099 | INFO     | ***************************************
[2025-10-13 07:16:42] 2025-10-13 05:15:59,099 | INFO     | 
[2025-10-13 07:16:42] 2025-10-13 05:15:59,099 | INFO     | architecture information:
[2025-10-13 07:16:42] 2025-10-13 05:15:59,099 | INFO     | executing command: cat /etc/os-release
[2025-10-13 07:16:42] 2025-10-13 05:15:59,113 | INFO     | cat /etc/os-release:
[2025-10-13 07:16:42] NAME="CentOS Linux"
[2025-10-13 07:16:42] VERSION="7 (Core)"
[2025-10-13 07:16:42] ID="centos"
[2025-10-13 07:16:42] ID_LIKE="rhel fedora"
[2025-10-13 07:16:42] VERSION_ID="7"
[2025-10-13 07:16:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 07:16:42] ANSI_COLOR="0;31"
[2025-10-13 07:16:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 07:16:42] HOME_URL="https://www.centos.org/"
[2025-10-13 07:16:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 07:16:42] 
[2025-10-13 07:16:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 07:16:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 07:16:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 07:16:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 07:16:42] 
[2025-10-13 07:16:42] 2025-10-13 05:15:59,114 | INFO     | ***************************************
[2025-10-13 07:16:42] 2025-10-13 05:15:59,615 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 07:16:42] 2025-10-13 05:15:59,632 | INFO     | sufficient remaining disk space (333207044096 B)
[2025-10-13 07:16:42] 2025-10-13 05:15:59,632 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 07:16:42] 2025-10-13 05:15:59,632 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 07:16:42] 2025-10-13 05:15:59,632 | INFO     | update_server=False
[2025-10-13 07:16:42] 2025-10-13 05:15:59,632 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 07:16:42] 2025-10-13 05:15:59,632 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:16:42] 2025-10-13 05:15:59,997 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 07:16:42] 2025-10-13 05:16:00,014 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 07:16:42] 2025-10-13 05:16:00,014 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 07:16:42] 2025-10-13 05:16:00,014 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:16:42] 2025-10-13 05:16:00,014 | INFO     | will abort loop
[2025-10-13 07:16:42] 2025-10-13 05:16:00,257 | INFO     | all job control threads have been joined
[2025-10-13 07:16:42] 2025-10-13 05:16:00,426 | INFO     | all data control threads have been joined
[2025-10-13 07:16:42] 2025-10-13 05:16:00,503 | INFO     | all payload control threads have been joined
[2025-10-13 07:16:42] 2025-10-13 05:16:00,638 | INFO     | [job] queue monitor thread has finished
[2025-10-13 07:16:42] 2025-10-13 05:16:00,638 | INFO     | [job] retrieve thread has finished
[2025-10-13 07:16:42] 2025-10-13 05:16:00,885 | INFO     | [data] copytool_in thread has finished
[2025-10-13 07:16:42] 2025-10-13 05:16:00,982 | INFO     | [payload] validate_post thread has finished
[2025-10-13 07:16:42] 2025-10-13 05:16:01,020 | INFO     | [job] job monitor thread has finished
[2025-10-13 07:16:42] 2025-10-13 05:16:01,263 | INFO     | [job] control thread has finished
[2025-10-13 07:16:42] 2025-10-13 05:16:01,342 | INFO     | [payload] failed_post thread has finished
[2025-10-13 07:16:42] 2025-10-13 05:16:01,431 | INFO     | [data] control thread has finished
[2025-10-13 07:16:42] 2025-10-13 05:16:01,506 | INFO     | [payload] control thread has finished
[2025-10-13 07:16:42] 2025-10-13 05:16:01,823 | INFO     | [job] validate thread has finished
[2025-10-13 07:16:42] 2025-10-13 05:16:01,846 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 07:16:42] 2025-10-13 05:16:01,967 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 07:16:42] 2025-10-13 05:16:02,003 | INFO     | [data] copytool_out thread has finished
[2025-10-13 07:16:42] 2025-10-13 05:16:02,134 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 07:16:42] 2025-10-13 05:16:02,856 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 07:16:42] 2025-10-13 05:16:06,864 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 07:16:42] 2025-10-13 05:16:09,833 | INFO     | job.realtimelogging is not enabled
[2025-10-13 07:16:42] 2025-10-13 05:16:10,839 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 07:16:42] 2025-10-13 05:16:29,922 | INFO     | PID=3726481 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 07:16:42] 2025-10-13 05:16:29,922 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 07:16:42] 2025-10-13 05:16:29,922 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 07:16:42] 2025-10-13 05:16:29,922 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 07:16:42] 2025-10-13 05:16:36,000 | INFO     | [monitor] cgroup control has ended
[2025-10-13 07:16:42] 2025-10-13 05:16:37,006 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139815116412736)>', '<ExcThread(monitor, started 139814171031296)>']
[2025-10-13 07:16:42] 2025-10-13 05:16:37,965 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 07:16:42] 2025-10-13 05:16:37,965 | INFO     | [monitor] control thread has ended
[2025-10-13 07:16:42] 2025-10-13 05:16:42,026 | INFO     | all workflow threads have been joined
[2025-10-13 07:16:42] 2025-10-13 05:16:42,026 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 07:16:42] 2025-10-13 05:16:42,026 | INFO     | traces error code: 0
[2025-10-13 07:16:42] 2025-10-13 05:16:42,026 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 07:16:42] 2025-10-13 05:16:42,096 [wrapper] ==== pilot stdout END ====
[2025-10-13 07:16:42] 2025-10-13 05:16:42,100 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 07:16:42] 2025-10-13 05:16:42,104 [wrapper] pilotpid: 3726481
[2025-10-13 07:16:42] 2025-10-13 05:16:42,107 [wrapper] Pilot exit status: 0
[2025-10-13 07:16:42] 2025-10-13 05:16:42,118 [wrapper] pandaids: 6840223642
[2025-10-13 07:16:42] 2025-10-13 05:16:42,140 [wrapper] cleanup supervisor_pilot 3743017 3726482
[2025-10-13 07:16:42] 2025-10-13 05:16:42,144 [wrapper] Test setup, not cleaning
[2025-10-13 07:16:42] 2025-10-13 05:16:42,148 [wrapper] apfmon messages muted
[2025-10-13 07:16:42] 2025-10-13 05:16:42,151 [wrapper] ==== wrapper stdout END ====
[2025-10-13 07:16:42] 2025-10-13 05:16:42,155 [wrapper] ==== wrapper stderr END ====
[2025-10-13 07:16:42]  *** Error codes and diagnostics ***
[2025-10-13 07:16:42]     "exeErrorCode": 0,
[2025-10-13 07:16:42]     "exeErrorDiag": "",
[2025-10-13 07:16:42]     "pilotErrorCode": 0,
[2025-10-13 07:16:42]     "pilotErrorDiag": "",
[2025-10-13 07:16:42]  *** Listing of results directory ***
[2025-10-13 07:16:42] total 403884
[2025-10-13 07:16:42] -rw-r--r-- 1 boinc boinc    557409 Oct 12 17:00 pilot3.tar.gz
[2025-10-13 07:16:42] -rw-r--r-- 1 boinc boinc      5112 Oct 12 17:09 queuedata.json
[2025-10-13 07:16:42] -rwx------ 1 boinc boinc     36292 Oct 12 17:10 runpilot2-wrapper.sh
[2025-10-13 07:16:42] -rw-r--r-- 1 boinc boinc       100 Oct 13 06:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 07:16:42] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 06:08 run_atlas
[2025-10-13 07:16:42] -rw-r--r-- 1 boinc boinc       105 Oct 13 06:08 job.xml
[2025-10-13 07:16:42] -rw-r--r-- 2 boinc boinc 219965005 Oct 13 06:08 EVNT.46676267._004552.pool.root.1
[2025-10-13 07:16:42] -rw-r--r-- 2 boinc boinc    569683 Oct 13 06:08 input.tar.gz
[2025-10-13 07:16:42] -rw-r--r-- 2 boinc boinc     15120 Oct 13 06:08 start_atlas.sh
[2025-10-13 07:16:42] drwxrwx--x 2 boinc boinc      4096 Oct 13 06:08 shared
[2025-10-13 07:16:42] -rw-r--r-- 1 boinc boinc         0 Oct 13 06:08 boinc_setup_complete
[2025-10-13 07:16:42] -rw-r--r-- 1 boinc boinc      6370 Oct 13 06:08 init_data.xml
[2025-10-13 07:16:42] -rw-r--r-- 1 boinc boinc         0 Oct 13 06:08 boinc_lockfile
[2025-10-13 07:16:42] -rw-r--r-- 1 boinc boinc      2550 Oct 13 06:08 pandaJob.out
[2025-10-13 07:16:42] -rw------- 1 boinc boinc    974373 Oct 13 06:08 agis_schedconf.cvmfs.json
[2025-10-13 07:16:42] -rw------- 1 boinc boinc   1560580 Oct 13 06:08 agis_ddmendpoints.agis.ALL.json
[2025-10-13 07:16:42] drwx------ 5 boinc boinc      4096 Oct 13 06:08 pilot3
[2025-10-13 07:16:42] -rw------- 1 boinc boinc 188008509 Oct 13 07:15 HITS.46676269._081746.pool.root.1
[2025-10-13 07:16:42] -rw-r--r-- 1 boinc boinc       529 Oct 13 07:15 boinc_task_state.xml
[2025-10-13 07:16:42] -rw------- 1 boinc boinc      1022 Oct 13 07:15 memory_monitor_summary.json
[2025-10-13 07:16:42] -rw------- 1 boinc boinc    251350 Oct 13 07:15 log.46676269._081746.job.log.tgz.1
[2025-10-13 07:16:42] -rw------- 1 boinc boinc        95 Oct 13 07:15 pilot_heartbeat.json
[2025-10-13 07:16:42] -rw------- 1 boinc boinc      7760 Oct 13 07:15 heartbeat.json
[2025-10-13 07:16:42] -rw-r--r-- 1 boinc boinc      8192 Oct 13 07:16 boinc_mmap_file
[2025-10-13 07:16:42] -rw-r--r-- 1 boinc boinc        27 Oct 13 07:16 wrapper_checkpoint.txt
[2025-10-13 07:16:42] -rw------- 1 boinc boinc      5010 Oct 13 07:16 pilotlog.txt
[2025-10-13 07:16:42] -rw------- 1 boinc boinc    604577 Oct 13 07:16 log.46676269._081746.job.log.1
[2025-10-13 07:16:42] -rw------- 1 boinc boinc       357 Oct 13 07:16 output.list
[2025-10-13 07:16:42] -rw-r--r-- 1 boinc boinc       620 Oct 13 07:16 runtime_log
[2025-10-13 07:16:42] -rw------- 1 boinc boinc    870400 Oct 13 07:16 result.tar.gz
[2025-10-13 07:16:42] -rw-r--r-- 1 boinc boinc      8777 Oct 13 07:16 runtime_log.err
[2025-10-13 07:16:42] -rw------- 1 boinc boinc       658 Oct 13 07:16 ZrNODmwtCS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmMOkNDmY3nh7m.diag
[2025-10-13 07:16:42] -rw-r--r-- 1 boinc boinc     12871 Oct 13 07:16 stderr.txt
[2025-10-13 07:16:42] HITS file was successfully produced:
[2025-10-13 07:16:42] -rw------- 1 boinc boinc 188008509 Oct 13 07:15 shared/HITS.pool.root.1
[2025-10-13 07:16:42]  *** Contents of shared directory: ***
[2025-10-13 07:16:42] total 399852
[2025-10-13 07:16:42] -rw-r--r-- 2 boinc boinc 219965005 Oct 13 06:08 ATLAS.root_0
[2025-10-13 07:16:42] -rw-r--r-- 2 boinc boinc    569683 Oct 13 06:08 input.tar.gz
[2025-10-13 07:16:42] -rw-r--r-- 2 boinc boinc     15120 Oct 13 06:08 start_atlas.sh
[2025-10-13 07:16:42] -rw------- 1 boinc boinc 188008509 Oct 13 07:15 HITS.pool.root.1
[2025-10-13 07:16:42] -rw------- 1 boinc boinc    870400 Oct 13 07:16 result.tar.gz
07:16:44 (3722707): run_atlas exited; CPU time 15184.600665
07:16:44 (3722707): called boinc_finish(0)

</stderr_txt>
]]>

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