Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:36:30 (32415): wrapper (7.7.26015): starting
14:36:30 (32415): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 14:36:30] Arguments: --nthreads 12
[2025-10-12 14:36:30] Threads: 12
[2025-10-12 14:36:30] Checking for CVMFS
[2025-10-12 14:36:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 14:36:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 14:36:30] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 14:36:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 14:36:31] 2.11.2.0 3165 8871 80616 151631 2 59 11966089 20275201 1 130560 0 8597496 99.993 293403 43058 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 14:36:31] CVMFS is ok
[2025-10-12 14:36:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 14:36:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 14:36:31] Further information can be found at the LHC@home message board.
[2025-10-12 14:36:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 14:36:31] Checking for apptainer binary...
[2025-10-12 14:36:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 14:36:31] Running /usr/bin/apptainer --version
[2025-10-12 14:36:31] apptainer version 1.3.2-1.el7
[2025-10-12 14:36:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 14:36:32] c-115-40.aglt2.org
[2025-10-12 14:36:32] apptainer works
[2025-10-12 14:36:32] Set ATHENA_PROC_NUMBER=12
[2025-10-12 14:36:32] Set ATHENA_CORE_NUMBER=12
[2025-10-12 14:36:32] Starting ATLAS job with PandaID=6840223607
[2025-10-12 14:36:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 15:42:58]  *** The last 200 lines of the pilot log: ***
[2025-10-12 15:42:58] 2025-10-12 19:42:14,218 | INFO     | transferring file log.46676269._081716.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840223607/log.46676269._081716.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 15:42:58] 2025-10-12 19:42:14,218 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840223607/log.46676269._081716.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._081716.job
[2025-10-12 15:42:58] 2025-10-12 19:42:14,260 | INFO     | adding to output.list: log.46676269._081716.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ba/42/log.46676269._081716.job.log.tg
[2025-10-12 15:42:58] 2025-10-12 19:42:14,261 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 15:42:58] 2025-10-12 19:42:14,261 | INFO     | summary of transferred files:
[2025-10-12 15:42:58] 2025-10-12 19:42:14,261 | INFO     |  -- lfn=log.46676269._081716.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 15:42:58] 2025-10-12 19:42:14,262 | INFO     | stage-out finished correctly
[2025-10-12 15:42:58] 2025-10-12 19:42:14,431 | WARNING  | process 10338 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 15:42:58] 2025-10-12 19:42:14,431 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840223607/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 15:42:58] 2025-10-12 19:42:14,514 | INFO     | number of running child processes to parent process 10338: 1
[2025-10-12 15:42:58] 2025-10-12 19:42:14,514 | INFO     | maximum number of monitored processes: 6
[2025-10-12 15:42:58] 2025-10-12 19:42:15,713 | INFO     | time since job start (3928s) is within the limit (172800.0s)
[2025-10-12 15:42:58] 2025-10-12 19:42:17,018 | INFO     | monitor loop #294: job 0:6840223607 is in state 'finished'
[2025-10-12 15:42:58] 2025-10-12 19:42:17,018 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 15:42:58] 2025-10-12 19:42:17,280 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 15:42:58] 2025-10-12 19:42:17,718 | INFO     | time since job start (3930s) is within the limit (172800.0s)
[2025-10-12 15:42:58] 2025-10-12 19:42:19,521 | INFO     | monitor loop #295: job 0:6840223607 is in state 'finished'
[2025-10-12 15:42:58] 2025-10-12 19:42:19,521 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 15:42:58] 2025-10-12 19:42:19,724 | INFO     | time since job start (3932s) is within the limit (172800.0s)
[2025-10-12 15:42:58] 2025-10-12 19:42:20,173 | INFO     | job 6840223607 has state=finished
[2025-10-12 15:42:58] 2025-10-12 19:42:20,174 | INFO     | preparing for final server update for job 6840223607 in state='finished'
[2025-10-12 15:42:58] 2025-10-12 19:42:20,174 | INFO     | this job has now completed (state=finished)
[2025-10-12 15:42:58] 2025-10-12 19:42:20,174 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 15:42:58] 2025-10-12 19:42:20,174 | INFO     | log transfer has been attempted: DONE
[2025-10-12 15:42:58] 2025-10-12 19:42:20,175 | INFO     | job 6840223607 has finished - writing final server update
[2025-10-12 15:42:58] 2025-10-12 19:42:20,175 | INFO     | total number of processed events: 400 (read)
[2025-10-12 15:42:58] 2025-10-12 19:42:20,176 | INFO     | executing command: lscpu
[2025-10-12 15:42:58] 2025-10-12 19:42:20,207 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 15:42:58] 2025-10-12 19:42:21,730 | INFO     | time since job start (3934s) is within the limit (172800.0s)
[2025-10-12 15:42:58] 2025-10-12 19:42:22,038 | INFO     | monitor loop #296: job 0:6840223607 is in state 'finished'
[2025-10-12 15:42:58] 2025-10-12 19:42:22,039 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 15:42:58] 2025-10-12 19:42:23,735 | INFO     | time since job start (3936s) is within the limit (172800.0s)
[2025-10-12 15:42:58] 2025-10-12 19:42:24,541 | INFO     | monitor loop #297: job 0:6840223607 is in state 'finished'
[2025-10-12 15:42:58] 2025-10-12 19:42:24,546 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 15:42:58] 2025-10-12 19:42:24,731 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 15:42:58] 2025-10-12 19:42:24,733 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-10-12 15:42:58] 2025-10-12 19:42:24,735 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840223607/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 15:42:58] 2025-10-12 19:42:24,735 | INFO     | extracted standard info from prmon json
[2025-10-12 15:42:58] 2025-10-12 19:42:24,735 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 15:42:58] 2025-10-12 19:42:24,736 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 15:42:58] 2025-10-12 19:42:24,736 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 15:42:58] 2025-10-12 19:42:24,736 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 15:42:58] 2025-10-12 19:42:24,737 | INFO     | fitting pss+swap vs Time
[2025-10-12 15:42:58] 2025-10-12 19:42:24,737 | INFO     | sum of square deviations: 57407588.0
[2025-10-12 15:42:58] 2025-10-12 19:42:24,738 | INFO     | sum of deviations: 636069692.0000001
[2025-10-12 15:42:58] 2025-10-12 19:42:24,738 | INFO     | mean x: 1760296248.0
[2025-10-12 15:42:58] 2025-10-12 19:42:24,738 | INFO     | mean y: 2691724.947368421
[2025-10-12 15:42:58] 2025-10-12 19:42:24,738 | INFO     | -- intersect: -19501194978.916862
[2025-10-12 15:42:58] 2025-10-12 19:42:24,738 | INFO     | intersect: -19501194978.916862
[2025-10-12 15:42:58] 2025-10-12 19:42:24,738 | INFO     | chi2: 0.03478860779158965
[2025-10-12 15:42:58] 2025-10-12 19:42:24,738 | INFO     | -- intersect: -19501194978.916862
[2025-10-12 15:42:58] 2025-10-12 19:42:24,739 | INFO     | current memory leak: 11.08 B/s (using 57 data points, chi2=0.03)
[2025-10-12 15:42:58] 2025-10-12 19:42:24,739 | INFO     | could have reported an average CPU frequency of 2141 MHz (6 samples)
[2025-10-12 15:42:58] 2025-10-12 19:42:24,739 | INFO     | ..............................
[2025-10-12 15:42:58] 2025-10-12 19:42:24,739 | INFO     | . Timing measurements:
[2025-10-12 15:42:58] 2025-10-12 19:42:24,739 | INFO     | . get job = 0 s
[2025-10-12 15:42:58] 2025-10-12 19:42:24,739 | INFO     | . initial setup = 2 s
[2025-10-12 15:42:58] 2025-10-12 19:42:24,739 | INFO     | . payload setup = 6 s
[2025-10-12 15:42:58] 2025-10-12 19:42:24,739 | INFO     | . stage-in = 0 s
[2025-10-12 15:42:58] 2025-10-12 19:42:24,740 | INFO     | . payload execution = 3899 s
[2025-10-12 15:42:58] 2025-10-12 19:42:24,740 | INFO     | . stage-out = 0 s
[2025-10-12 15:42:58] 2025-10-12 19:42:24,740 | INFO     | . log creation = 0 s
[2025-10-12 15:42:58] 2025-10-12 19:42:24,740 | INFO     | ..............................
[2025-10-12 15:42:58] 2025-10-12 19:42:24,815 | INFO     | 
[2025-10-12 15:42:58] 2025-10-12 19:42:24,815 | INFO     | job summary report
[2025-10-12 15:42:58] 2025-10-12 19:42:24,815 | INFO     | --------------------------------------------------
[2025-10-12 15:42:58] 2025-10-12 19:42:24,815 | INFO     | PanDA job id: 6840223607
[2025-10-12 15:42:58] 2025-10-12 19:42:24,816 | INFO     | task id: 46676269
[2025-10-12 15:42:58] 2025-10-12 19:42:24,816 | INFO     | errors: (none)
[2025-10-12 15:42:58] 2025-10-12 19:42:24,816 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 15:42:58] 2025-10-12 19:42:24,816 | INFO     | pilot state: finished 
[2025-10-12 15:42:58] 2025-10-12 19:42:24,816 | INFO     | transexitcode: 0
[2025-10-12 15:42:58] 2025-10-12 19:42:24,816 | INFO     | exeerrorcode: 0
[2025-10-12 15:42:58] 2025-10-12 19:42:24,817 | INFO     | exeerrordiag: 
[2025-10-12 15:42:58] 2025-10-12 19:42:24,817 | INFO     | exitcode: 0
[2025-10-12 15:42:58] 2025-10-12 19:42:24,817 | INFO     | exitmsg: OK
[2025-10-12 15:42:58] 2025-10-12 19:42:24,817 | INFO     | cpuconsumptiontime: 41092 s
[2025-10-12 15:42:58] 2025-10-12 19:42:24,817 | INFO     | nevents: 400
[2025-10-12 15:42:58] 2025-10-12 19:42:24,817 | INFO     | neventsw: 0
[2025-10-12 15:42:58] 2025-10-12 19:42:24,818 | INFO     | pid: 10338
[2025-10-12 15:42:58] 2025-10-12 19:42:24,818 | INFO     | pgrp: 10338
[2025-10-12 15:42:58] 2025-10-12 19:42:24,818 | INFO     | corecount: 12
[2025-10-12 15:42:58] 2025-10-12 19:42:24,818 | INFO     | event service: False
[2025-10-12 15:42:58] 2025-10-12 19:42:24,818 | INFO     | sizes: {0: 2348806, 5: 2349068, 11: 2349124, 3911: 2374909, 3912: 2383907, 3915: 2383963, 3922: 2384285}
[2025-10-12 15:42:58] 2025-10-12 19:42:24,818 | INFO     | --------------------------------------------------
[2025-10-12 15:42:58] 2025-10-12 19:42:24,818 | INFO     | 
[2025-10-12 15:42:58] 2025-10-12 19:42:24,819 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 15:42:58] 2025-10-12 19:42:24,843 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 15:42:58] 2025-10-12 19:42:24,843 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 15:42:58] 2025-10-12 19:42:24,843 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 15:42:58] 2025-10-12 19:42:24,844 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 15:42:58] 2025-10-12 19:42:24,844 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 15:42:58] 2025-10-12 19:42:24,844 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 15:42:58] 2025-10-12 19:42:24,844 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 15:42:58] 2025-10-12 19:42:24,844 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 15:42:58] 2025-10-12 19:42:24,844 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 15:42:58] 2025-10-12 19:42:24,844 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 15:42:58] 2025-10-12 19:42:24,845 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 15:42:58] 2025-10-12 19:42:24,845 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 15:42:58] 2025-10-12 19:42:24,845 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 15:42:58] 2025-10-12 19:42:24,845 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 15:42:58] 2025-10-12 19:42:24,845 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 15:42:58] 2025-10-12 19:42:24,845 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 15:42:58] 2025-10-12 19:42:24,845 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 15:42:58] 2025-10-12 19:42:24,846 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 15:42:58] 2025-10-12 19:42:24,846 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 15:42:58] 2025-10-12 19:42:24,846 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 15:42:58] 2025-10-12 19:42:24,846 | INFO     | job 6840223607 has completed (purged errors)
[2025-10-12 15:42:58] 2025-10-12 19:42:24,846 | INFO     | overall cleanup function is called
[2025-10-12 15:42:58] 2025-10-12 19:42:25,854 | INFO     | --- collectZombieJob: --- 10, [10338]
[2025-10-12 15:42:58] 2025-10-12 19:42:25,854 | INFO     | zombie collector waiting for pid 10338
[2025-10-12 15:42:58] 2025-10-12 19:42:25,854 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 15:42:58] 2025-10-12 19:42:25,855 | INFO     | collected zombie processes
[2025-10-12 15:42:58] 2025-10-12 19:42:25,855 | INFO     | will attempt to kill all subprocesses of pid=10338
[2025-10-12 15:42:58] 2025-10-12 19:42:25,943 | INFO     | process IDs to be killed: [10338] (in reverse order)
[2025-10-12 15:42:58] 2025-10-12 19:42:26,008 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 15:42:58] 2025-10-12 19:42:26,008 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 15:42:58] 2025-10-12 19:42:26,012 | INFO     | did not find any defunct processes belonging to 10338
[2025-10-12 15:42:58] 2025-10-12 19:42:26,014 | INFO     | did not find any defunct processes belonging to 10338
[2025-10-12 15:42:58] 2025-10-12 19:42:26,014 | INFO     | ready for new job
[2025-10-12 15:42:58] 2025-10-12 19:42:26,015 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 15:42:58] 2025-10-12 19:42:26,016 | INFO     | ***************************************
[2025-10-12 15:42:58] 2025-10-12 19:42:26,016 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 15:42:58] 2025-10-12 19:42:26,016 | INFO     | ***************************************
[2025-10-12 15:42:58] 2025-10-12 19:42:26,016 | INFO     | 
[2025-10-12 15:42:58] 2025-10-12 19:42:26,016 | INFO     | architecture information:
[2025-10-12 15:42:58] 2025-10-12 19:42:26,017 | INFO     | executing command: cat /etc/os-release
[2025-10-12 15:42:58] 2025-10-12 19:42:26,033 | INFO     | cat /etc/os-release:
[2025-10-12 15:42:58] NAME="CentOS Linux"
[2025-10-12 15:42:58] VERSION="7 (Core)"
[2025-10-12 15:42:58] ID="centos"
[2025-10-12 15:42:58] ID_LIKE="rhel fedora"
[2025-10-12 15:42:58] VERSION_ID="7"
[2025-10-12 15:42:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 15:42:58] ANSI_COLOR="0;31"
[2025-10-12 15:42:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 15:42:58] HOME_URL="https://www.centos.org/"
[2025-10-12 15:42:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 15:42:58] 
[2025-10-12 15:42:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 15:42:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 15:42:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 15:42:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 15:42:58] 
[2025-10-12 15:42:58] 2025-10-12 19:42:26,033 | INFO     | ***************************************
[2025-10-12 15:42:58] 2025-10-12 19:42:26,536 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 15:42:58] 2025-10-12 19:42:26,553 | INFO     | sufficient remaining disk space (18707644416 B)
[2025-10-12 15:42:58] 2025-10-12 19:42:26,554 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 15:42:58] 2025-10-12 19:42:26,554 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 15:42:58] 2025-10-12 19:42:26,554 | INFO     | update_server=False
[2025-10-12 15:42:58] 2025-10-12 19:42:26,554 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 15:42:58] 2025-10-12 19:42:26,555 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:42:58] 2025-10-12 19:42:27,049 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 15:42:58] 2025-10-12 19:42:27,049 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 15:42:58] 2025-10-12 19:42:27,050 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:42:58] 2025-10-12 19:42:27,050 | INFO     | will abort loop
[2025-10-12 15:42:58] 2025-10-12 19:42:27,363 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 15:42:58] 2025-10-12 19:42:27,410 | INFO     | all data control threads have been joined
[2025-10-12 15:42:58] 2025-10-12 19:42:27,559 | INFO     | [job] queue monitor thread has finished
[2025-10-12 15:42:58] 2025-10-12 19:42:27,560 | INFO     | [job] retrieve thread has finished
[2025-10-12 15:42:58] 2025-10-12 19:42:27,706 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 15:42:58] 2025-10-12 19:42:27,861 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 15:42:58] 2025-10-12 19:42:27,922 | INFO     | [data] copytool_in thread has finished
[2025-10-12 15:42:58] 2025-10-12 19:42:28,044 | INFO     | all payload control threads have been joined
[2025-10-12 15:42:58] 2025-10-12 19:42:28,055 | INFO     | [job] job monitor thread has finished
[2025-10-12 15:42:58] 2025-10-12 19:42:28,149 | INFO     | all job control threads have been joined
[2025-10-12 15:42:58] 2025-10-12 19:42:28,416 | INFO     | [data] control thread has finished
[2025-10-12 15:42:58] 2025-10-12 19:42:28,598 | INFO     | [job] validate thread has finished
[2025-10-12 15:42:58] 2025-10-12 19:42:28,698 | INFO     | [payload] validate_post thread has finished
[2025-10-12 15:42:58] 2025-10-12 19:42:28,747 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 15:42:58] 2025-10-12 19:42:28,926 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 15:42:58] 2025-10-12 19:42:28,968 | INFO     | [payload] failed_post thread has finished
[2025-10-12 15:42:58] 2025-10-12 19:42:29,049 | INFO     | [payload] control thread has finished
[2025-10-12 15:42:58] 2025-10-12 19:42:29,155 | INFO     | [job] control thread has finished
[2025-10-12 15:42:58] 2025-10-12 19:42:29,369 | INFO     | [data] copytool_out thread has finished
[2025-10-12 15:42:58] 2025-10-12 19:42:31,867 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 15:42:58] 2025-10-12 19:42:36,766 | INFO     | job.realtimelogging is not enabled
[2025-10-12 15:42:58] 2025-10-12 19:42:37,772 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 15:42:58] 2025-10-12 19:42:52,708 | INFO     | [monitor] cgroup control has ended
[2025-10-12 15:42:58] 2025-10-12 19:42:53,567 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140375501690688)>', '<ExcThread(monitor, started 140374697834240)>']
[2025-10-12 15:42:58] 2025-10-12 19:42:56,936 | INFO     | PID=3939 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 15:42:58] 2025-10-12 19:42:56,937 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 15:42:58] 2025-10-12 19:42:56,937 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 15:42:58] 2025-10-12 19:42:56,937 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 15:42:58] 2025-10-12 19:42:56,937 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 15:42:58] 2025-10-12 19:42:56,937 | INFO     | [monitor] control thread has ended
[2025-10-12 15:42:58] 2025-10-12 19:42:58,573 | INFO     | all workflow threads have been joined
[2025-10-12 15:42:58] 2025-10-12 19:42:58,573 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 15:42:58] 2025-10-12 19:42:58,574 | INFO     | traces error code: 0
[2025-10-12 15:42:58] 2025-10-12 19:42:58,574 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 15:42:58] 2025-10-12 19:42:58,656 [wrapper] ==== pilot stdout END ====
[2025-10-12 15:42:58] 2025-10-12 19:42:58,660 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 15:42:58] 2025-10-12 19:42:58,664 [wrapper] pilotpid: 3939
[2025-10-12 15:42:58] 2025-10-12 19:42:58,667 [wrapper] Pilot exit status: 0
[2025-10-12 15:42:58] 2025-10-12 19:42:58,683 [wrapper] pandaids: 6840223607
[2025-10-12 15:42:58] 2025-10-12 19:42:58,722 [wrapper] cleanup supervisor_pilot  8427 3940
[2025-10-12 15:42:58] 2025-10-12 19:42:58,726 [wrapper] Test setup, not cleaning
[2025-10-12 15:42:58] 2025-10-12 19:42:58,731 [wrapper] apfmon messages muted
[2025-10-12 15:42:58] 2025-10-12 19:42:58,735 [wrapper] ==== wrapper stdout END ====
[2025-10-12 15:42:58] 2025-10-12 19:42:58,738 [wrapper] ==== wrapper stderr END ====
[2025-10-12 15:42:58]  *** Error codes and diagnostics ***
[2025-10-12 15:42:58]     "exeErrorCode": 0,
[2025-10-12 15:42:58]     "exeErrorDiag": "",
[2025-10-12 15:42:58]     "pilotErrorCode": 0,
[2025-10-12 15:42:58]     "pilotErrorDiag": "",
[2025-10-12 15:42:58]  *** Listing of results directory ***
[2025-10-12 15:42:58] total 407584
[2025-10-12 15:42:58] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 11:00 pilot3.tar.gz
[2025-10-12 15:42:58] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 11:06 queuedata.json
[2025-10-12 15:42:58] -rwx------ 1 boincer umatlas     36292 Oct 12 11:07 runpilot2-wrapper.sh
[2025-10-12 15:42:58] -rw-r--r-- 1 boincer umatlas       100 Oct 12 14:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 15:42:58] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 14:36 run_atlas
[2025-10-12 15:42:58] -rw-r--r-- 1 boincer umatlas       105 Oct 12 14:36 job.xml
[2025-10-12 15:42:58] -rw-r--r-- 2 boincer umatlas 221886220 Oct 12 14:36 EVNT.46676267._004551.pool.root.1
[2025-10-12 15:42:58] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 14:36 start_atlas.sh
[2025-10-12 15:42:58] drwxrwx--x 2 boincer umatlas      4096 Oct 12 14:36 shared
[2025-10-12 15:42:58] -rw-r--r-- 2 boincer umatlas    569684 Oct 12 14:36 input.tar.gz
[2025-10-12 15:42:58] -rw-r--r-- 1 boincer umatlas         0 Oct 12 14:36 boinc_lockfile
[2025-10-12 15:42:58] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 14:36 pandaJob.out
[2025-10-12 15:42:58] -rw------- 1 boincer umatlas    975528 Oct 12 14:36 agis_schedconf.cvmfs.json
[2025-10-12 15:42:58] -rw------- 1 boincer umatlas   1560580 Oct 12 14:36 agis_ddmendpoints.agis.ALL.json
[2025-10-12 15:42:58] drwx------ 5 boincer umatlas      4096 Oct 12 14:36 pilot3
[2025-10-12 15:42:58] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 15:37 init_data.xml
[2025-10-12 15:42:58] -rw------- 1 boincer umatlas 189686967 Oct 12 15:41 HITS.46676269._081716.pool.root.1
[2025-10-12 15:42:58] -rw------- 1 boincer umatlas      1050 Oct 12 15:42 memory_monitor_summary.json
[2025-10-12 15:42:58] -rw------- 1 boincer umatlas    365893 Oct 12 15:42 log.46676269._081716.job.log.tgz.1
[2025-10-12 15:42:58] -rw-r--r-- 1 boincer umatlas       529 Oct 12 15:42 boinc_task_state.xml
[2025-10-12 15:42:58] -rw------- 1 boincer umatlas      7850 Oct 12 15:42 heartbeat.json
[2025-10-12 15:42:58] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 15:42 boinc_mmap_file
[2025-10-12 15:42:58] -rw-r--r-- 1 boincer umatlas        27 Oct 12 15:42 wrapper_checkpoint.txt
[2025-10-12 15:42:58] -rw------- 1 boincer umatlas        95 Oct 12 15:42 pilot_heartbeat.json
[2025-10-12 15:42:58] -rw------- 1 boincer umatlas      5003 Oct 12 15:42 pilotlog.txt
[2025-10-12 15:42:58] -rw------- 1 boincer umatlas    579525 Oct 12 15:42 log.46676269._081716.job.log.1
[2025-10-12 15:42:58] -rw------- 1 boincer umatlas       357 Oct 12 15:42 output.list
[2025-10-12 15:42:58] -rw-r--r-- 1 boincer umatlas       620 Oct 12 15:42 runtime_log
[2025-10-12 15:42:58] -rw------- 1 boincer umatlas    962560 Oct 12 15:42 result.tar.gz
[2025-10-12 15:42:58] -rw------- 1 boincer umatlas       659 Oct 12 15:42 vo5MDmZqCS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmUDUMDmOhVVhm.diag
[2025-10-12 15:42:58] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 15:42 runtime_log.err
[2025-10-12 15:42:58] -rw-r--r-- 1 boincer umatlas     22442 Oct 12 15:42 stderr.txt
[2025-10-12 15:42:58] HITS file was successfully produced:
[2025-10-12 15:42:58] -rw------- 1 boincer umatlas 189686967 Oct 12 15:41 shared/HITS.pool.root.1
[2025-10-12 15:42:58]  *** Contents of shared directory: ***
[2025-10-12 15:42:58] total 403452
[2025-10-12 15:42:58] -rw-r--r-- 2 boincer umatlas 221886220 Oct 12 14:36 ATLAS.root_0
[2025-10-12 15:42:58] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 14:36 start_atlas.sh
[2025-10-12 15:42:58] -rw-r--r-- 2 boincer umatlas    569684 Oct 12 14:36 input.tar.gz
[2025-10-12 15:42:58] -rw------- 1 boincer umatlas 189686967 Oct 12 15:41 HITS.pool.root.1
[2025-10-12 15:42:58] -rw------- 1 boincer umatlas    962560 Oct 12 15:42 result.tar.gz
15:43:00 (32415): run_atlas exited; CPU time 41093.110786
15:43:00 (32415): called boinc_finish(0)

</stderr_txt>
]]>

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