Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:25:02 (1088): wrapper (7.7.26015): starting
14:25:02 (1088): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 14:25:02] Arguments: --nthreads 8
[2025-10-12 14:25:02] Threads: 8
[2025-10-12 14:25:02] Checking for CVMFS
[2025-10-12 14:25:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 14:25:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 14:25:02] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 14:25:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 14:25:02] 2.11.2.0 2913 24747 77952 151631 2 56 14189331 20275201 1 130560 0 12553406 99.988 788000 38510 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 14:25:02] CVMFS is ok
[2025-10-12 14:25:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 14:25:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 14:25:02] Further information can be found at the LHC@home message board.
[2025-10-12 14:25:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 14:25:02] Checking for apptainer binary...
[2025-10-12 14:25:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 14:25:02] Running /usr/bin/apptainer --version
[2025-10-12 14:25:02] apptainer version 1.3.2-1.el7
[2025-10-12 14:25:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 14:25:04] c-115-3.aglt2.org
[2025-10-12 14:25:04] apptainer works
[2025-10-12 14:25:04] Set ATHENA_PROC_NUMBER=8
[2025-10-12 14:25:04] Set ATHENA_CORE_NUMBER=8
[2025-10-12 14:25:04] Starting ATLAS job with PandaID=6840428689
[2025-10-12 14:25:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 16:13:38]  *** The last 200 lines of the pilot log: ***
[2025-10-12 16:13:38] 2025-10-12 20:13:13,744 | INFO     | time since job start (6473s) is within the limit (172800.0s)
[2025-10-12 16:13:38] 2025-10-12 20:13:13,795 | INFO     | monitor loop #481: job 0:6840428689 is in state 'finished'
[2025-10-12 16:13:38] 2025-10-12 20:13:13,796 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:13:38] 2025-10-12 20:13:15,749 | INFO     | time since job start (6475s) is within the limit (172800.0s)
[2025-10-12 16:13:38] 2025-10-12 20:13:15,802 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 16:13:38] 2025-10-12 20:13:15,806 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1712.5
[2025-10-12 16:13:38] 2025-10-12 20:13:15,808 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840428689/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 16:13:38] 2025-10-12 20:13:15,809 | INFO     | extracted standard info from prmon json
[2025-10-12 16:13:38] 2025-10-12 20:13:15,809 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 16:13:38] 2025-10-12 20:13:15,810 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 16:13:38] 2025-10-12 20:13:15,810 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 16:13:38] 2025-10-12 20:13:15,810 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 16:13:38] 2025-10-12 20:13:15,813 | INFO     | fitting pss+swap vs Time
[2025-10-12 16:13:38] 2025-10-12 20:13:15,813 | INFO     | sum of square deviations: 369281342.5
[2025-10-12 16:13:38] 2025-10-12 20:13:15,813 | INFO     | sum of deviations: 5714929051.500001
[2025-10-12 16:13:38] 2025-10-12 20:13:15,813 | INFO     | mean x: 1760296753.5
[2025-10-12 16:13:38] 2025-10-12 20:13:15,814 | INFO     | mean y: 2526234.8584905663
[2025-10-12 16:13:38] 2025-10-12 20:13:15,814 | INFO     | -- intersect: -27239497387.925232
[2025-10-12 16:13:38] 2025-10-12 20:13:15,814 | INFO     | intersect: -27239497387.925232
[2025-10-12 16:13:38] 2025-10-12 20:13:15,814 | INFO     | chi2: 1.4483541180990667
[2025-10-12 16:13:38] 2025-10-12 20:13:15,814 | INFO     | sum of square deviations: 319447850.0
[2025-10-12 16:13:38] 2025-10-12 20:13:15,815 | INFO     | sum of deviations: 5560936900.0
[2025-10-12 16:13:38] 2025-10-12 20:13:15,815 | INFO     | mean x: 1760296601.0
[2025-10-12 16:13:38] 2025-10-12 20:13:15,815 | INFO     | mean y: 2525763.4851485146
[2025-10-12 16:13:38] 2025-10-12 20:13:15,815 | INFO     | -- intersect: -30640655348.691616
[2025-10-12 16:13:38] 2025-10-12 20:13:15,815 | INFO     | intersect: -30640655348.691616
[2025-10-12 16:13:38] 2025-10-12 20:13:15,815 | INFO     | chi2: 1.4511906171087108
[2025-10-12 16:13:38] 2025-10-12 20:13:15,816 | INFO     | current chi2=1.4511906171087108 (change=-0.19584292088504948 %)
[2025-10-12 16:13:38] 2025-10-12 20:13:15,816 | INFO     | right removable region: 100
[2025-10-12 16:13:38] 2025-10-12 20:13:15,816 | INFO     | sum of square deviations: 319447850.0
[2025-10-12 16:13:38] 2025-10-12 20:13:15,816 | INFO     | sum of deviations: -9064953068.000002
[2025-10-12 16:13:38] 2025-10-12 20:13:15,816 | INFO     | mean x: 1760296906.0
[2025-10-12 16:13:38] 2025-10-12 20:13:15,817 | INFO     | mean y: 2570430.8217821782
[2025-10-12 16:13:38] 2025-10-12 20:13:15,817 | INFO     | -- intersect: 49954413395.5987
[2025-10-12 16:13:38] 2025-10-12 20:13:15,817 | INFO     | intersect: 49954413395.5987
[2025-10-12 16:13:38] 2025-10-12 20:13:15,817 | INFO     | chi2: 0.08872179830712894
[2025-10-12 16:13:38] 2025-10-12 20:13:15,817 | INFO     | current chi2=0.08872179830712894 (change=93.87430206477582 %)
[2025-10-12 16:13:38] 2025-10-12 20:13:15,817 | INFO     | sum of square deviations: 274312120.0
[2025-10-12 16:13:38] 2025-10-12 20:13:15,818 | INFO     | sum of deviations: -7337329673.0
[2025-10-12 16:13:38] 2025-10-12 20:13:15,818 | INFO     | mean x: 1760297058.5
[2025-10-12 16:13:38] 2025-10-12 20:13:15,818 | INFO     | mean y: 2564445.6875
[2025-10-12 16:13:38] 2025-10-12 20:13:15,818 | INFO     | -- intersect: 47087176823.10147
[2025-10-12 16:13:38] 2025-10-12 20:13:15,818 | INFO     | intersect: 47087176823.10147
[2025-10-12 16:13:38] 2025-10-12 20:13:15,818 | INFO     | chi2: 0.0767689691007607
[2025-10-12 16:13:38] 2025-10-12 20:13:15,819 | INFO     | current chi2=0.0767689691007607 (change=13.472257589945414 %)
[2025-10-12 16:13:38] 2025-10-12 20:13:15,819 | INFO     | left removable region: 20
[2025-10-12 16:13:38] 2025-10-12 20:13:15,819 | INFO     | sum of square deviations: 158737860.0
[2025-10-12 16:13:38] 2025-10-12 20:13:15,819 | INFO     | sum of deviations: -731031991.0000001
[2025-10-12 16:13:38] 2025-10-12 20:13:15,819 | INFO     | mean x: 1760297180.5
[2025-10-12 16:13:38] 2025-10-12 20:13:15,819 | INFO     | mean y: 2538484.975
[2025-10-12 16:13:38] 2025-10-12 20:13:15,820 | INFO     | -- intersect: 8109196547.598508
[2025-10-12 16:13:38] 2025-10-12 20:13:15,820 | INFO     | intersect: 8109196547.598508
[2025-10-12 16:13:38] 2025-10-12 20:13:15,820 | INFO     | chi2: 0.02336310293057655
[2025-10-12 16:13:38] 2025-10-12 20:13:15,820 | INFO     | -- intersect: 8109196547.598508
[2025-10-12 16:13:38] 2025-10-12 20:13:15,820 | INFO     | current memory leak: -4.61 B/s (using 80 data points, chi2=0.02)
[2025-10-12 16:13:38] 2025-10-12 20:13:15,820 | INFO     | could have reported an average CPU frequency of 2097 MHz (7 samples)
[2025-10-12 16:13:38] 2025-10-12 20:13:15,821 | INFO     | ..............................
[2025-10-12 16:13:38] 2025-10-12 20:13:15,821 | INFO     | . Timing measurements:
[2025-10-12 16:13:38] 2025-10-12 20:13:15,821 | INFO     | . get job = 0 s
[2025-10-12 16:13:38] 2025-10-12 20:13:15,821 | INFO     | . initial setup = 2 s
[2025-10-12 16:13:38] 2025-10-12 20:13:15,821 | INFO     | . payload setup = 8 s
[2025-10-12 16:13:38] 2025-10-12 20:13:15,821 | INFO     | . stage-in = 0 s
[2025-10-12 16:13:38] 2025-10-12 20:13:15,821 | INFO     | . payload execution = 6437 s
[2025-10-12 16:13:38] 2025-10-12 20:13:15,821 | INFO     | . stage-out = 0 s
[2025-10-12 16:13:38] 2025-10-12 20:13:15,821 | INFO     | . log creation = 0 s
[2025-10-12 16:13:38] 2025-10-12 20:13:15,822 | INFO     | ..............................
[2025-10-12 16:13:38] 2025-10-12 20:13:15,903 | INFO     | 
[2025-10-12 16:13:38] 2025-10-12 20:13:15,903 | INFO     | job summary report
[2025-10-12 16:13:38] 2025-10-12 20:13:15,903 | INFO     | --------------------------------------------------
[2025-10-12 16:13:38] 2025-10-12 20:13:15,904 | INFO     | PanDA job id: 6840428689
[2025-10-12 16:13:38] 2025-10-12 20:13:15,904 | INFO     | task id: 46676269
[2025-10-12 16:13:38] 2025-10-12 20:13:15,904 | INFO     | errors: (none)
[2025-10-12 16:13:38] 2025-10-12 20:13:15,904 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 16:13:38] 2025-10-12 20:13:15,904 | INFO     | pilot state: finished 
[2025-10-12 16:13:38] 2025-10-12 20:13:15,904 | INFO     | transexitcode: 0
[2025-10-12 16:13:38] 2025-10-12 20:13:15,905 | INFO     | exeerrorcode: 0
[2025-10-12 16:13:38] 2025-10-12 20:13:15,905 | INFO     | exeerrordiag: 
[2025-10-12 16:13:38] 2025-10-12 20:13:15,905 | INFO     | exitcode: 0
[2025-10-12 16:13:38] 2025-10-12 20:13:15,905 | INFO     | exitmsg: OK
[2025-10-12 16:13:38] 2025-10-12 20:13:15,905 | INFO     | cpuconsumptiontime: 47999 s
[2025-10-12 16:13:38] 2025-10-12 20:13:15,905 | INFO     | nevents: 400
[2025-10-12 16:13:38] 2025-10-12 20:13:15,906 | INFO     | neventsw: 0
[2025-10-12 16:13:38] 2025-10-12 20:13:15,906 | INFO     | pid: 11288
[2025-10-12 16:13:38] 2025-10-12 20:13:15,906 | INFO     | pgrp: 11288
[2025-10-12 16:13:38] 2025-10-12 20:13:15,906 | INFO     | corecount: 8
[2025-10-12 16:13:38] 2025-10-12 20:13:15,906 | INFO     | event service: False
[2025-10-12 16:13:38] 2025-10-12 20:13:15,906 | INFO     | sizes: {0: 2348685, 1: 2348884, 6: 2349146, 11: 2349174, 6449: 2376172, 6450: 2376171, 6451: 2385353, 6453: 2385409, 6458: 2385603}
[2025-10-12 16:13:38] 2025-10-12 20:13:15,907 | INFO     | --------------------------------------------------
[2025-10-12 16:13:38] 2025-10-12 20:13:15,907 | INFO     | 
[2025-10-12 16:13:38] 2025-10-12 20:13:15,907 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 16:13:38] 2025-10-12 20:13:15,935 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 16:13:38] 2025-10-12 20:13:15,936 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 16:13:38] 2025-10-12 20:13:15,936 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 16:13:38] 2025-10-12 20:13:15,936 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 16:13:38] 2025-10-12 20:13:15,937 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 16:13:38] 2025-10-12 20:13:15,937 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 16:13:38] 2025-10-12 20:13:15,937 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 16:13:38] 2025-10-12 20:13:15,937 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 16:13:38] 2025-10-12 20:13:15,937 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 16:13:38] 2025-10-12 20:13:15,937 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 16:13:38] 2025-10-12 20:13:15,938 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 16:13:38] 2025-10-12 20:13:15,938 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 16:13:38] 2025-10-12 20:13:15,938 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 16:13:38] 2025-10-12 20:13:15,938 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 16:13:38] 2025-10-12 20:13:15,938 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 16:13:38] 2025-10-12 20:13:15,939 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 16:13:38] 2025-10-12 20:13:15,939 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 16:13:38] 2025-10-12 20:13:15,939 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 16:13:38] 2025-10-12 20:13:15,939 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 16:13:38] 2025-10-12 20:13:15,939 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 16:13:38] 2025-10-12 20:13:15,940 | INFO     | job 6840428689 has completed (purged errors)
[2025-10-12 16:13:38] 2025-10-12 20:13:15,940 | INFO     | overall cleanup function is called
[2025-10-12 16:13:38] 2025-10-12 20:13:16,947 | INFO     | --- collectZombieJob: --- 10, [11288]
[2025-10-12 16:13:38] 2025-10-12 20:13:16,948 | INFO     | zombie collector waiting for pid 11288
[2025-10-12 16:13:38] 2025-10-12 20:13:16,948 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 16:13:38] 2025-10-12 20:13:16,949 | INFO     | collected zombie processes
[2025-10-12 16:13:38] 2025-10-12 20:13:16,949 | INFO     | will attempt to kill all subprocesses of pid=11288
[2025-10-12 16:13:38] 2025-10-12 20:13:17,034 | INFO     | process IDs to be killed: [11288] (in reverse order)
[2025-10-12 16:13:38] 2025-10-12 20:13:17,087 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 16:13:38] 2025-10-12 20:13:17,087 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 16:13:38] 2025-10-12 20:13:17,091 | INFO     | did not find any defunct processes belonging to 11288
[2025-10-12 16:13:38] 2025-10-12 20:13:17,093 | INFO     | did not find any defunct processes belonging to 11288
[2025-10-12 16:13:38] 2025-10-12 20:13:17,094 | INFO     | ready for new job
[2025-10-12 16:13:38] 2025-10-12 20:13:17,094 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 16:13:38] 2025-10-12 20:13:17,095 | INFO     | ***************************************
[2025-10-12 16:13:38] 2025-10-12 20:13:17,095 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 16:13:38] 2025-10-12 20:13:17,095 | INFO     | ***************************************
[2025-10-12 16:13:38] 2025-10-12 20:13:17,095 | INFO     | 
[2025-10-12 16:13:38] 2025-10-12 20:13:17,096 | INFO     | architecture information:
[2025-10-12 16:13:38] 2025-10-12 20:13:17,097 | INFO     | executing command: cat /etc/os-release
[2025-10-12 16:13:38] 2025-10-12 20:13:17,116 | INFO     | cat /etc/os-release:
[2025-10-12 16:13:38] NAME="CentOS Linux"
[2025-10-12 16:13:38] VERSION="7 (Core)"
[2025-10-12 16:13:38] ID="centos"
[2025-10-12 16:13:38] ID_LIKE="rhel fedora"
[2025-10-12 16:13:38] VERSION_ID="7"
[2025-10-12 16:13:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 16:13:38] ANSI_COLOR="0;31"
[2025-10-12 16:13:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 16:13:38] HOME_URL="https://www.centos.org/"
[2025-10-12 16:13:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 16:13:38] 
[2025-10-12 16:13:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 16:13:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 16:13:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 16:13:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 16:13:38] 
[2025-10-12 16:13:38] 2025-10-12 20:13:17,116 | INFO     | ***************************************
[2025-10-12 16:13:38] 2025-10-12 20:13:17,620 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 16:13:38] 2025-10-12 20:13:17,641 | INFO     | sufficient remaining disk space (18677235712 B)
[2025-10-12 16:13:38] 2025-10-12 20:13:17,642 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 16:13:38] 2025-10-12 20:13:17,642 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 16:13:38] 2025-10-12 20:13:17,642 | INFO     | update_server=False
[2025-10-12 16:13:38] 2025-10-12 20:13:17,643 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 16:13:38] 2025-10-12 20:13:17,643 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:13:38] 2025-10-12 20:13:17,643 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:13:38] 2025-10-12 20:13:17,644 | INFO     | aborting loop
[2025-10-12 16:13:38] 2025-10-12 20:13:17,644 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-12 16:13:38] 2025-10-12 20:13:17,645 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 16:13:38] 2025-10-12 20:13:17,645 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 16:13:38] 2025-10-12 20:13:17,645 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 16:13:38] 2025-10-12 20:13:18,455 | INFO     | all data control threads have been joined
[2025-10-12 16:13:38] 2025-10-12 20:13:18,646 | INFO     | [job] job monitor thread has finished
[2025-10-12 16:13:38] 2025-10-12 20:13:18,648 | INFO     | [job] retrieve thread has finished
[2025-10-12 16:13:38] 2025-10-12 20:13:18,649 | INFO     | [job] queue monitor thread has finished
[2025-10-12 16:13:38] 2025-10-12 20:13:19,002 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 16:13:38] 2025-10-12 20:13:19,051 | INFO     | all payload control threads have been joined
[2025-10-12 16:13:38] 2025-10-12 20:13:19,130 | INFO     | [data] copytool_in thread has finished
[2025-10-12 16:13:38] 2025-10-12 20:13:19,140 | INFO     | [job] validate thread has finished
[2025-10-12 16:13:38] 2025-10-12 20:13:19,222 | INFO     | [payload] failed_post thread has finished
[2025-10-12 16:13:38] 2025-10-12 20:13:19,289 | INFO     | all job control threads have been joined
[2025-10-12 16:13:38] 2025-10-12 20:13:19,459 | INFO     | [data] control thread has finished
[2025-10-12 16:13:38] 2025-10-12 20:13:19,593 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 16:13:38] 2025-10-12 20:13:19,630 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 16:13:38] 2025-10-12 20:13:19,642 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 16:13:38] 2025-10-12 20:13:19,783 | INFO     | [payload] validate_post thread has finished
[2025-10-12 16:13:38] 2025-10-12 20:13:20,056 | INFO     | [payload] control thread has finished
[2025-10-12 16:13:38] 2025-10-12 20:13:20,109 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 16:13:38] 2025-10-12 20:13:20,295 | INFO     | [job] control thread has finished
[2025-10-12 16:13:38] 2025-10-12 20:13:20,940 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 16:13:38] 2025-10-12 20:13:21,008 | INFO     | [data] copytool_out thread has finished
[2025-10-12 16:13:38] 2025-10-12 20:13:24,946 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 16:13:38] 2025-10-12 20:13:30,828 | INFO     | [monitor] cgroup control has ended
[2025-10-12 16:13:38] 2025-10-12 20:13:32,807 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140544084510528)>', '<ExcThread(monitor, started 140543132690176)>']
[2025-10-12 16:13:38] 2025-10-12 20:13:33,708 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 16:13:38] 2025-10-12 20:13:33,708 | INFO     | [monitor] control thread has ended
[2025-10-12 16:13:38] 2025-10-12 20:13:37,832 | INFO     | all workflow threads have been joined
[2025-10-12 16:13:38] 2025-10-12 20:13:37,832 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 16:13:38] 2025-10-12 20:13:37,833 | INFO     | traces error code: 0
[2025-10-12 16:13:38] 2025-10-12 20:13:37,835 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 16:13:38] 2025-10-12 20:13:37,951 [wrapper] ==== pilot stdout END ====
[2025-10-12 16:13:38] 2025-10-12 20:13:37,955 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 16:13:38] 2025-10-12 20:13:37,960 [wrapper] pilotpid: 4931
[2025-10-12 16:13:38] 2025-10-12 20:13:37,964 [wrapper] Pilot exit status: 0
[2025-10-12 16:13:38] 2025-10-12 20:13:37,982 [wrapper] pandaids: 6840428689
[2025-10-12 16:13:38] 2025-10-12 20:13:38,025 [wrapper] cleanup supervisor_pilot 17852 4932
[2025-10-12 16:13:38] 2025-10-12 20:13:38,029 [wrapper] Test setup, not cleaning
[2025-10-12 16:13:38] 2025-10-12 20:13:38,034 [wrapper] apfmon messages muted
[2025-10-12 16:13:38] 2025-10-12 20:13:38,038 [wrapper] ==== wrapper stdout END ====
[2025-10-12 16:13:38] 2025-10-12 20:13:38,043 [wrapper] ==== wrapper stderr END ====
[2025-10-12 16:13:38]  *** Error codes and diagnostics ***
[2025-10-12 16:13:38]     "exeErrorCode": 0,
[2025-10-12 16:13:38]     "exeErrorDiag": "",
[2025-10-12 16:13:38]     "pilotErrorCode": 0,
[2025-10-12 16:13:38]     "pilotErrorDiag": "",
[2025-10-12 16:13:38]  *** Listing of results directory ***
[2025-10-12 16:13:38] total 368712
[2025-10-12 16:13:38] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 12:49 pilot3.tar.gz
[2025-10-12 16:13:38] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 13:02 queuedata.json
[2025-10-12 16:13:38] -rwx------ 1 boincer umatlas     36292 Oct 12 13:03 runpilot2-wrapper.sh
[2025-10-12 16:13:38] -rw-r--r-- 1 boincer umatlas       100 Oct 12 14:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 16:13:38] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 14:25 run_atlas
[2025-10-12 16:13:38] -rw-r--r-- 1 boincer umatlas       105 Oct 12 14:25 job.xml
[2025-10-12 16:13:38] -rw-r--r-- 2 boincer umatlas 178759475 Oct 12 14:25 EVNT.46676267._004796.pool.root.1
[2025-10-12 16:13:38] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 14:25 start_atlas.sh
[2025-10-12 16:13:38] drwxrwx--x 2 boincer umatlas      4096 Oct 12 14:25 shared
[2025-10-12 16:13:38] -rw-r--r-- 2 boincer umatlas    569682 Oct 12 14:25 input.tar.gz
[2025-10-12 16:13:38] -rw-r--r-- 1 boincer umatlas         0 Oct 12 14:25 boinc_lockfile
[2025-10-12 16:13:38] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 14:25 pandaJob.out
[2025-10-12 16:13:38] -rw------- 1 boincer umatlas    975528 Oct 12 14:25 agis_schedconf.cvmfs.json
[2025-10-12 16:13:38] -rw------- 1 boincer umatlas   1560580 Oct 12 14:25 agis_ddmendpoints.agis.ALL.json
[2025-10-12 16:13:38] drwx------ 5 boincer umatlas      4096 Oct 12 14:25 pilot3
[2025-10-12 16:13:38] -rw------- 1 boincer umatlas 192347284 Oct 12 16:12 HITS.46676269._084291.pool.root.1
[2025-10-12 16:13:38] -rw-r--r-- 1 boincer umatlas       529 Oct 12 16:12 boinc_task_state.xml
[2025-10-12 16:13:38] -rw------- 1 boincer umatlas        95 Oct 12 16:12 pilot_heartbeat.json
[2025-10-12 16:13:38] -rw------- 1 boincer umatlas      1047 Oct 12 16:13 memory_monitor_summary.json
[2025-10-12 16:13:38] -rw------- 1 boincer umatlas    357037 Oct 12 16:13 log.46676269._084291.job.log.tgz.1
[2025-10-12 16:13:38] -rw------- 1 boincer umatlas      7841 Oct 12 16:13 heartbeat.json
[2025-10-12 16:13:38] -rw-r--r-- 1 boincer umatlas      5908 Oct 12 16:13 init_data.xml
[2025-10-12 16:13:38] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 16:13 boinc_mmap_file
[2025-10-12 16:13:38] -rw-r--r-- 1 boincer umatlas        27 Oct 12 16:13 wrapper_checkpoint.txt
[2025-10-12 16:13:38] -rw------- 1 boincer umatlas      4552 Oct 12 16:13 pilotlog.txt
[2025-10-12 16:13:38] -rw------- 1 boincer umatlas    918175 Oct 12 16:13 log.46676269._084291.job.log.1
[2025-10-12 16:13:38] -rw------- 1 boincer umatlas       357 Oct 12 16:13 output.list
[2025-10-12 16:13:38] -rw-r--r-- 1 boincer umatlas       620 Oct 12 16:13 runtime_log
[2025-10-12 16:13:38] -rw------- 1 boincer umatlas   1290240 Oct 12 16:13 result.tar.gz
[2025-10-12 16:13:38] -rw-r--r-- 1 boincer umatlas      8698 Oct 12 16:13 runtime_log.err
[2025-10-12 16:13:38] -rw------- 1 boincer umatlas       657 Oct 12 16:13 DwHNDmGfES8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmXlkNDmK7sqSm.diag
[2025-10-12 16:13:38] -rw-r--r-- 1 boincer umatlas     21021 Oct 12 16:13 stderr.txt
[2025-10-12 16:13:38] HITS file was successfully produced:
[2025-10-12 16:13:38] -rw------- 1 boincer umatlas 192347284 Oct 12 16:12 shared/HITS.pool.root.1
[2025-10-12 16:13:38]  *** Contents of shared directory: ***
[2025-10-12 16:13:38] total 364256
[2025-10-12 16:13:38] -rw-r--r-- 2 boincer umatlas 178759475 Oct 12 14:25 ATLAS.root_0
[2025-10-12 16:13:38] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 14:25 start_atlas.sh
[2025-10-12 16:13:38] -rw-r--r-- 2 boincer umatlas    569682 Oct 12 14:25 input.tar.gz
[2025-10-12 16:13:38] -rw------- 1 boincer umatlas 192347284 Oct 12 16:12 HITS.pool.root.1
[2025-10-12 16:13:38] -rw------- 1 boincer umatlas   1290240 Oct 12 16:13 result.tar.gz
16:13:40 (1088): run_atlas exited; CPU time 48012.375059
16:13:40 (1088): called boinc_finish(0)

</stderr_txt>
]]>

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